36240e173a3f594ca10406cc50b376a0 *DESCRIPTION
da2f765130f33d68edbf0bc48b0fa25b *NAMESPACE
abdb01958a9508084c317e20c54ad9ec *R/JAGSmodel.R
8384a35349c528f8429dfcec4f450113 *R/MCMCfit.R
e04230a58aadd6782ad0f497d4b3ae51 *R/ModelMats.R
5ea174001e93ae92e091ecd827fd0459 *R/NextVisit.R
d62cfddf21e663082988779c71865d32 *R/RcppExports.R
7c49d7063844031498b4a8d8041c49eb *R/S.b.R
3fc802430c8adcf6f61cd5c66e278b73 *R/STANmodels.R
84e19a9756a29e0a8cf6fdf9a399cfd5 *R/adjustKRW.R
63643be488a1cd6a20d812ce548d1bf0 *R/adjustScaleRW.R
99feeb9770860d2b531700175d197114 *R/anova.JMbayes.R
bc1f5fe5cc75ed660c2890a4a118d058 *R/aucJM.JMbayes.R
e119c8ce46cd7beb710c4d6248451217 *R/aucJM.R
ba0f32518bbf5591188c52b9fae16001 *R/aucJM.coxph.R
592b7098ec684a1ffc355f809ff5de4c *R/aucJM.mvJMbayes.R
874f62973f980ddbf415a1ea5d507143 *R/bdiag.R
ea180136f7b2912861cab81b5430e908 *R/blockUpdate.R
9d984103fb45aa7545eb56a4ed041b95 *R/bma.combine.R
d228a24a53b099604af6615a8a73bb30 *R/cd.R
a40e956112c051b80b628dec65be2616 *R/cd.vec.R
6335db23f53aa6c53401916f60821b15 *R/check_td.R
2e4520f8a51aa2a52049b4962b185ed3 *R/chol.transf.R
38eea0b75cbe1497cd63c4a2ea2db216 *R/coef.JMbayes.R
b9e3804436e22aaafad3ab3647eea3c4 *R/coef.summary.JMbayes.R
45d69a8857077ed1648116f80cc2920d *R/computeP.R
62fbe549336483c1e7ba21017cad2ffd *R/confint.JMbayes.R
f6d405ceb458b3a879ae803ed03fb37d *R/crLong.R
4a934205ad70a51f7c91ffb91982873e *R/cvDCL.R
7ddc2a22b85995eb119d11b3d4b6b4af *R/dataLM.R
51a43fa818a1a32143931f3de9106477 *R/dbs.R
6677717c581c28c555e4a09501a9e6ed *R/dgbeta.R
1608f7aa611c29744e085a67d2a0c7ab *R/dgt.R
8cad36bb5cf6dae1402b706f8f4af403 *R/dmvnorm.R
9e644f5f870baf8fdc31ca47c79d11c8 *R/dmvt.R
cec7432cd15ef024030fad7a2124e9b9 *R/dns.R
a82aa4c0ad372ab69f7bd56ce0a0430f *R/draw.stick.R
d4ba202311aafa2dd131e4f04e639fb9 *R/dropAttr.R
ff6e0f59cc3db33109c7455fdcd03c80 *R/dwish.R
677b3e5814e71695f5fff03ae7002e71 *R/dynCJM.JMbayes.R
98df0886b9a81ca886e06cad7f3e6025 *R/dynCJM.R
dde50198b28372773f1f28440d196308 *R/dynCJM.coxph.R
6d47d9e6f66d11a4f75079f4e453d691 *R/dynInfo.R
adab24cf1726c1efa1a1094568296c41 *R/dynPred_lme.R
bfbebc19b6527096b1f1a04c61047e73 *R/effectiveSize.R
9705c89544be49059ab30b1c04c6d24f *R/expected_failure_time.R
c82968211042877019c676cf702cd48a *R/extractFrames.R
58a85fe423154662a22c6f8a727f2fcd *R/extractInits.R
0fe2013965eff194bd5b729f3eb6a2aa *R/extractPriors.R
20827b372b406cc5a5087da68023a409 *R/fastSumID.R
9eaf81b92b219ebfb39a0c06da95aa7d *R/fastSumID2.R
3edef8a796c82193e8e67718d59fd63e *R/fd.R
63bad5bce30a4aac3a14f04de865dc2c *R/fd.vec.R
4718d5b83cc3f0fa518fcf85bebbfeb6 *R/find_positions.R
8d7307cd92e00c2d1cb3ead83444b680 *R/fitted.JMbayes.R
7371154b28264adbcd1d599c0de8e97f *R/fixNames.R
350c2878fe19b0165432eced7d4eb0ca *R/fixef.JMbayes.R
b29b5d2f81f4e838c75f65d25c7ef5c2 *R/format.perc.R
6d05a41db4b09b30408784ae9b2f0acf *R/format.pval2.R
3c504626a0afc08c4c318dab66dc3ffc *R/gaussKronrod.R
7ed81e7c79911640198c28b33a1e615f *R/gaussLegendre.R
0332c377bb12cddde8e1dab069a36543 *R/globals.R
f38b5dfb5e77b827a029a55f2d4da67c *R/hMats.R
3b414afd7570b6e7fcb5c6f3090cfb41 *R/hessian.JMbayes.R
4d1da468db170bc34726d1c4b3d0fae6 *R/ibs.R
a2a3e6dd608958613a53b62731d343b7 *R/initSurv_mvJointModelBayes.R
7c522fd3967e06bfc46cd22706c42958 *R/initSurvival.R
76e02e453fdb155dc480c35d76dd3c5f *R/ins.R
c6e9502ea83bebea299fb50cbffb6fb3 *R/jointModelBayes.R
8c43544fbf59c99e943a413aef73dcfc *R/log.posterior.b.R
5411ddf0ce93132c35a07437a8b603db *R/logLik.JMbayes.R
99f503d022028f5298b2326d1aad6f83 *R/logh.b.R
0e9dba68386b7b23e35828fedb66a542 *R/makepredictcall.dbs.R
c1eb3f0bbb898e5a0b115b920981fca6 *R/makepredictcall.dns.R
c2ff4b5f46ee601dfe59a06ef4c53a65 *R/makepredictcall.ibs.R
be10618a0627ee5062d4819d29824e60 *R/makepredictcall.ins.R
d0497d5497752d1bc2299dacadc530f1 *R/margLogLik2.R
a959aae1e71e78ab793338cc01b3b0ec *R/marglogLik.R
f6a3917c33fd97e44f50a0848b79474d *R/methods_mvJointModelBayes.R
e57959dcad15a71359a206ef15a5e0a5 *R/modes.R
86898f63974b6ca17cf308cc126d0ad1 *R/mvJointModelBayes.R
08263c0ad5bc1848731e041e00598227 *R/mv_glmer.R
83f04fb3bf7167b74a4e9ad659276449 *R/nearPD.R
e125acce83667f37cff5ab6f3a496251 *R/pgt.R
d83e0fc85fd19d0a2c534b3b2581526c *R/plot.JMbayes.R
2c0f396d53fc9ad3c2f1b3e744cb0ebb *R/plot.rocJM.R
db57df4ec605599548e477864fab9869 *R/plot.survfit.JMbayes.R
048efea9e9af2acd548eed687bfc95c9 *R/prederrJM.JMbayes.R
7dfb47273da4f597e351dded97f83db4 *R/prederrJM.R
b54aed0121b0dea9c953c1c48fca531c *R/prederrJM.coxph.R
c2dc923abd44bcbb4b81a6a886c2377c *R/prederrJM.mvJMbayes.R
48b2f2bc351b02360ffe06a28e4237a7 *R/predict.JMbayes.R
88a50fbabe9b5fd2bad0bfd6219e85d3 *R/predict_eventTime.R
375d882dbcaed10bb6f9d363841cdb89 *R/print.JMbayes.R
bc5be9e39bfb23df912279f656008926 *R/print.aucJM.R
ec79261cd95e7160df1af7e153b0abf3 *R/print.dynCJM.R
d42f469cae609f357664916b7b5d52b5 *R/print.prederrJM.R
061d43af19c7032a92f76b195a2f7d88 *R/print.rocJM.R
e57899d800c77abf41e5950be6223099 *R/print.summary.JMbayes.R
0879c19ab5d261ab47f73c0f2259c5dc *R/print.survfit.JMbayes.R
f55761582d42f27595389cb6bdb6f772 *R/printCall.R
695b8cad7f75689f451198b2f79e783f *R/qgt.R
5a2899f7fbdec456826cda9efd41339a *R/ranef.JMbayes.R
a19f754b0f68d1aefd8662ae4d49986b *R/residuals.JMbayes.R
8f79df33a857384c9d1e41bc63605685 *R/rgt.R
55581f1e8d484d53e7002510ff5d857e *R/rmvnorm.R
caac54f5106e403eee10bd23a31a2751 *R/rmvt.R
36086a8a00399eb65957579833a4e148 *R/rocJM.JMbayes.R
3f23f3e20469454e189f593a6eab50e0 *R/rocJM.R
46c66ab5bd8686fc044f8e625576514b *R/rocJM.mvJMbayes.R
845fc402ca3149b13aaca7c10f2bf3d4 *R/rowMedians.R
73de933869519e4631899ffb1c8396bf *R/runDynPred.R
b07208a5ff6ff4dbe88770e469e24989 *R/slice.shape.R
38a8c80ac2ed5507072cf0babf9c5c77 *R/slice.tau.R
d9d7247468d9ef1cbd5c8c02b2c4f663 *R/smilyface.R
b62397b00cc092c45b5de84f6d5c89c3 *R/stdErr.R
c749b4dbb19aafc9892ce1b158117931 *R/summary.JMbayes.R
ab88ae253749ed0b73bc98ec1b645039 *R/supportFuns_mvJointModelBayes.R
23699ea8d653215173083ad06368726c *R/survPriors.R
96791ab50d787ebbd4e393f0fcaf7473 *R/survfitJM.JMbayes.R
8175c76baa2bda8517e8902e14fbad3d *R/survfitJM.R
2b07ae3362af501ec79abe6b15ecfbd5 *R/survfitJM.mvJMbayes.R
e912b789053da5cec99e5607175af425 *R/survivalFun.R
7227f1f3fe55ad2400cb16664b586275 *R/td_effect.R
b47c9283f18854e12f1d0ccd32859519 *R/trimAboveMean.R
1a644b17c74303bf4154bb956efa54bc *R/update.JMbayes.R
7e432b2f981236bcefc6602a3658b94e *R/vcov.JMbayes.R
0ea6e2d05fbaffabad90918733b77db2 *R/xtable.JMbayes.R
e31af929dcf2bba08603979ac811ee3f *README.md
b45a08564c6d113a6b133f8f8340a5c4 *data/aids.id.rda
0c91cfcab65d67a057f0901de1b8a9f9 *data/aids.rda
3f16a58c30687354dd89c10258e604c4 *data/pbc2.id.rda
fdcb143258d4bc1d5b5ae502dbdb9a1b *data/pbc2.rda
16b173d39aa518a526f58f40cccfd5eb *data/prothro.rda
d5983a9ed02887996c1085a8615ba031 *data/prothros.rda
9737513fe22f32a570450364654cb413 *inst/CITATION
e8e55c9bac29ec5a459e9a8ef6aadc4b *inst/NEWS
ccd0cbd3d233adf5460a236cf3bb218f *inst/shiny_app_JM/global.R
b9e35d49cd4975a471505aca533cd21e *inst/shiny_app_JM/server.R
4214321bcae25d0dd40503706001ff53 *inst/shiny_app_JM/ui.R
c902c93178954bbb802d176ebda58176 *inst/shiny_app_JM/white_space.Rhtml
6e45ffb54eaddee1f751d1dab03b5545 *inst/shiny_app_lme/global.R
1558625cfac5ff39e78beea185226656 *inst/shiny_app_lme/server.R
4970226e7eed8c6c0f7ef9df07395051 *inst/shiny_app_lme/ui.R
5b8834a0cc1c97be51cad878543f1f6c *man/DerivIntSplines.Rd
126596d464d58d8056104858d8eecffd *man/IndvPred.Rd
f5ef41a0b6067aba721548fecbb93e62 *man/JMbayes.Rd
1ac65f35fed5fdabc77f17ec9749a25a *man/JMbayesObject.Rd
6b3e3608f33349e64ff8a5c17584e537 *man/aids.Rd
ce85b46d97fe4cbd74519a401ad8c6b7 *man/anova.Rd
d5f9b98d607ffb6c5af9b11f352b2cf6 *man/aucJM.Rd
41c269a86a080758fb0172f49055a125 *man/bma.combine.Rd
534c8b087bf1bee1d8b6818ae4e05a22 *man/coef.Rd
e56c3c044c3fe5a2b616eb6c61e827f3 *man/cvDCL.Rd
f9a910bd065558698401986e30017eef *man/dynCJM.Rd
a83db47854fab948f383895307dcf4ca *man/dynInfo.Rd
b7a4467bfde59e08a7d3d12da9fc28a8 *man/fitted.Rd
ff64e6342c42593370db17ec633f396a *man/gt.Rd
32e56bcef7332222b66facb0343492b0 *man/jointModelBayes.Rd
2a240248af80d21d8c7c1407c8fcd6d4 *man/logLik.Rd
4daee5f93d4166a1649803a148bb0c06 *man/marglogLik.Rd
8289ba575764b4c164d7d96b15d43ab1 *man/mvJointModelBayes.Rd
16579b3a99ccf2fde8a2279cdedcdbcb *man/mvglmer.Rd
d6f6ca334bcf99bf73390c85255efbeb *man/pbc.Rd
24f50e36ca63bcce4b1b2416b8868903 *man/plot-survfitJM.Rd
b749900c327647e77bd57e3c29e1d2e8 *man/plot.Rd
1d7fa75eea051061929e0170bc72ca7d *man/prederrJM.Rd
463f1efd85e7eb22cd18ddb8f11d24a1 *man/predict.Rd
d33cf53092ef7dad6adf2b1d0c1f160a *man/prothro.Rd
363ab89df06e73a7a00717844d3d8738 *man/ranef.Rd
b9f4af9af8f861187607463b5a1777e2 *man/runDynPred.Rd
ced64876909c01f907aafb3c2ad57f01 *man/survfitJM.Rd
e30364629a673bc6df40c1eb00156ced *man/tve.Rd
75d23a3efc69fb21c316e63566c79f15 *man/xtable.Rd
c53a3bd4fca4686646210189f5b4eda6 *src/Makevars
c53a3bd4fca4686646210189f5b4eda6 *src/Makevars.win
ac62d351e26d4567b8ae9bc6769e483a *src/RcppExports.cpp
455e154770cac371e6d286ffae1a747f *src/fast_LAPRWM.cpp
01b3f019ec1431510818667bcdfc4ac5 *src/fast_dmvnorm.cpp
75b4fcf7937bc76065bb53592f16c056 *src/fast_logPost.cpp
d153d27e6898c1a92eac78ea044987d5 *src/fast_score.cpp
2847dff6beaec33ef2dffcc9195704c0 *src/survfitJM_mvJMbayes.cpp
