c95885784c53d661b1c97bc5b1198171 *DESCRIPTION
46581582a1e74bc37fae677726d3cf3d *NAMESPACE
e64d889eb6aaf8e9c6295b8166999d86 *R/Script_00_CreateMarvelObject.R
d7480bc83f286c0b5bbfe267b2b6536c *R/Script_01_0_ComputePSI.R
a5b3d3a284208097922e3dfce7ddb19e *R/Script_01_1_ComputePSI_SE.R
01fd4e266de820ad511858f228fc2771 *R/Script_01_2_ComputePSI_MXE.R
a3d5402c924169e06da9bb840b9539ff *R/Script_01_3_ComputePSI_A5SS.R
efdf587e4070a377b3c9b2cb3ed53300 *R/Script_01_4_ComputePSI_A3SS.R
e5c0d831e3d67652219e6d432f5bf50d *R/Script_01_5_ComputePSI_RI.R
37eaa03fc9a159dfff9b994c1c9b6736 *R/Script_02_1_AssignModality.R
0a156179f6b1873e12cd048e291b40b0 *R/Script_02_2_0_PropModality.R
5671960446cd059fc398351eecc0de7a *R/Script_02_2_1_PropModality_Doughnut.R
f8e0a1555ad4f4ff59506c5038c4b52b *R/Script_02_2_2_PropModality_Bar.R
519a5924d57e843a291de7424d0e0f68 *R/Script_03_0_CompareValues.R
145f40eaaf4de2d90a7848b8f857b37f *R/Script_03_1_CompareValues_PSI.R
52bf776161d7deb21789615bdb1da2ab *R/Script_03_2_CompareValues_Exp.R
f13858ea14ef520515dd4957f6059750 *R/Script_03_4_CompareValues_IsoSwitch.R
8b57c5576d1e8389f99a1434f4f7910b *R/Script_03_5_CompareValues_ModalityChange.R
6e0994d4dc961d54ebc8e663528b605f *R/Script_03_6_CompareValues_GO.R
a4c1096b8757a2a46804bc171ab80398 *R/Script_04_0_RunPCA.R
322b2df7e2c5685aaa4dcc0a5e12e192 *R/Script_04_1_RunPCA_PSI.R
15678f9696f7b29ef2841237e54f1f36 *R/Script_04_2_RunPCA_Exp.R
a7f9605a7f746c4f1c8556c45a683c4b *R/Script_05_0_PlotValues.R
90849d4c0130c0b66a88c2cd0170d3b2 *R/Script_05_1_PlotValues_PSI.R
48e675d8980e809e743106c0446f880b *R/Script_05_2_PlotValues_Exp.R
9194a8876d49ecb3eba41eed7a135c24 *build/vignette.rds
427f72c064068c4e036d81b3fd5caf3b *inst/doc/MARVEL.R
76fee8a7adcc99c62ba05b7529c536b2 *inst/doc/MARVEL.Rmd
0e79668bb9cd44e7f443e33f6da58c70 *inst/doc/MARVEL.html
ebfd6a31c30a7ba7b84428a8b559a507 *inst/extdata/Data/A3SS.txt
e6950b909a52345fccdee3d878bd1fa9 *inst/extdata/Data/A3SS_featureData.txt
e3c989fd9c7d3271f307e969171a6c55 *inst/extdata/Data/A3SS_featureData_Validated.txt
6aee6728d273300f674551ef6243bad1 *inst/extdata/Data/A5SS.txt
12e97647a465e752c26262430f335bb7 *inst/extdata/Data/A5SS_featureData.txt
b1a4ed026036800e6a0e6e7bbe404ee3 *inst/extdata/Data/A5SS_featureData_Validated.txt
156dd0a68b65ce6116238366bf1c5f74 *inst/extdata/Data/Counts_per_Base_Validated.txt
fe0546cdc7f9464d74158beeb9288ab2 *inst/extdata/Data/MXE.txt
d67db056427f1b8109cc490fab554cd6 *inst/extdata/Data/MXE_featureData.txt
17847199be042088ba2aa00a2b17973a *inst/extdata/Data/MXE_featureData_Validated.txt
4009b8bc416e7afce178aff19178c933 *inst/extdata/Data/MarvelObject.rds
8ecc05b0d12cbf5dc4781ea3f76d7210 *inst/extdata/Data/RI.txt
554639bd216e57d229cb0ff6c3a0c274 *inst/extdata/Data/RI_featureData.txt
f168629bfcfe7b79f988758c5bee22cb *inst/extdata/Data/RI_featureData_Validated.txt
91ef6ca403650829c630339210155f62 *inst/extdata/Data/SE.txt
8efd6d29d2763cd07f5eaf66b1fc142b *inst/extdata/Data/SE_featureData.txt
98b0f875137a01bc1bced9b0f506a8e4 *inst/extdata/Data/SE_featureData_Validated.txt
d005af386ac84f5b136059c854b9ea51 *inst/extdata/Data/SJ.txt
67877d1964b3e1e192807ee2a852a328 *inst/extdata/Data/SJ_phenoData.txt
cf2f38577ee73f378acd6e2fd971229c *inst/extdata/Data/TPM.txt
ba83aadbf3f8204e785ad3c79da68c1a *inst/extdata/Data/TPM_featureData.txt
67877d1964b3e1e192807ee2a852a328 *inst/extdata/Data/TPM_phenoData.txt
62daafd518d808b1a6852580371b753c *inst/extdata/SE.txt
c65523b5601e4a8efa23b0f27a63d188 *inst/extdata/SE_featureData.txt
c65523b5601e4a8efa23b0f27a63d188 *inst/extdata/SE_featureDataValidated.txt
c96f8f4a190d2dfede513cf5f97382d4 *inst/extdata/SE_phenoData.txt
5dcd9e9567123891204c7038e9d09edc *inst/extdata/SJ.txt
0d74dc370f2cd8353023ae40dcc0015f *inst/extdata/TPM.txt
aeff1144ba136584f7a9ec4ae6ee9aee *inst/extdata/TPM_featureData.txt
c96f8f4a190d2dfede513cf5f97382d4 *inst/extdata/TPM_phenoData.txt
7f32f0e5abb5d36c3759c85383539b4f *inst/extdata/Vignette_Fig_0_Software_Comparison.png
2987ab08187a3bf2a4ffae98c0d465c3 *inst/extdata/Vignette_Fig_10_Appendix_Modality_Proportions-min.png
fb67bf44cdb560ed26d116c18c812dc8 *inst/extdata/Vignette_Fig_1_PSI_Formula-min.png
6c3cfae5b36bcbd0535a207f68743d66 *inst/extdata/Vignette_Fig_2_PSI_Modalities-min.png
0841f406df20df712ea8efcf64804ca2 *inst/extdata/Vignette_Fig_3_PSI_Modalities_Included-min.png
7b82b1af038bf46141bb151f9bc96eff *inst/extdata/Vignette_Fig_4_PSI_Modalities_Excluded-min.png
500d577fe04378c18b0b1c945625186b *inst/extdata/Vignette_Fig_5_PSI_True_vs_False_Bimodal-min.png
dd86a173332a4e31fa618cd810233a48 *inst/extdata/Vignette_Fig_6_Appendix_Single-Cell_Correlation-min.png
ff9bd8f924da13748cf91e10a3743028 *inst/extdata/Vignette_Fig_7_Appendix_Single-Cell-Bulk_Correlation-min.png
75f5babae69ae7004ab007b20d71d3fc *inst/extdata/Vignette_Fig_8_Appendix_Genes_vs_mRNA_Counts-min.png
8e4b8191be72ff2af752d9d6c550d732 *inst/extdata/Vignette_Fig_9_Appendix_Bimodal_Features-min.png
7b92d3a41dcd04da24852abeeb5ef539 *man/AssignModality.Rd
7cbfe3130dbd0b6ac3465c1f24f9f16f *man/BioPathways.Rd
5599b05022806e91b2647cc8a8653653 *man/CompareValues.Exp.Rd
15bf7633202d1a437e2ff2209968b794 *man/CompareValues.PSI.Rd
7aad0843006d4ac3a57ca1b61b9d0e14 *man/CompareValues.Rd
d067c46ea783525578cfad6055741eda *man/ComputePSI.A3SS.Rd
8a94eb6f539603132e98af196cb68984 *man/ComputePSI.A5SS.Rd
752ca4dffe2cdd2c772919ff0ec6b94c *man/ComputePSI.MXE.Rd
b08e20c2112bbd9e414cb75cee717b3f *man/ComputePSI.RI.Rd
38125f27b4ddc7461600c886a797ae2f *man/ComputePSI.Rd
5215095e14ec49b95c5d1acbb8da700d *man/ComputePSI.SE.Rd
3f08f43eca93db3ce799dc48af02fdf2 *man/CreateMarvelObject.Rd
88618fe05b660048957a838408458e4c *man/IsoSwitch.Rd
73c13e85e3ae1d70192b7ed11e700825 *man/ModalityChange.Rd
51a2280c237251e40e3ac28ff5e49614 *man/PlotValues.Exp.Rd
b273bbe0e5934b321eb09d93cfb14529 *man/PlotValues.PSI.Rd
705cb56138445fc8bce6aa5e8606f9ce *man/PlotValues.Rd
5d767bcd7c33f89e94bf9ddc3b7a568a *man/PropModality.Bar.Rd
6913b1073f474f68d0128cacb6946100 *man/PropModality.Doughnut.Rd
1f0e4b5f3bc70a0e12a117d1f6e8e7af *man/PropModality.Rd
7f5617334ea3c125cfbf27c9a08d4a83 *man/RunPCA.Exp.Rd
f3d66fac02e6480dfa549d83a0100300 *man/RunPCA.PSI.Rd
9f69e1f6e4f7ee8b4c9938c5266bb3ee *man/RunPCA.Rd
76fee8a7adcc99c62ba05b7529c536b2 *vignettes/MARVEL.Rmd
