4d88aa15f6a62d62655907c29cfc95d3 *DESCRIPTION
e8817fab6fb45f412aea28419193d034 *NAMESPACE
67969b05ffd82a992a09d09348d4e572 *R/Alignment.R
33ab9d0dcf55199b748c981a9b1945b6 *R/CalculInformation.R
e505e03b5c86937ad8787ba5a1074946 *R/CalculPSSM.R
5455998f25cf8da784c33bd6c1e59439 *R/CalculPWM.R
1b5414a8d0702b50219f0cd23b3bde21 *R/CalculRedundancy.R
711d6a6247669edf34ca2f4fe6d4acdd *R/CalculScores.R
741ce8b6aad17933e0e8e9ca03d2e3f3 *R/CalculSimilarity.R
c2a836e880e089846bb1bd400ea45aca *R/ConstructModel.R
b3217e8978c6c4a8b6217368fc4452f2 *R/CreateConsensus.R
e65c2d5483bf01ab87635e76893bf2c4 *R/DivergenceDROSOPHILA.R
1505c8fd1e4f29d9a57abeac667ad1c4 *R/DivergenceHOMO.R
f4c104f1eafdbd0ee1de70160dd8d8cb *R/DivergenceMUS.R
8738af7fca7415aa8fcdbe4fe45a7c4c *R/DivergenceRATTUS.R
44b00a97fa11a89468443a18601e65b4 *R/EntropyDROSOPHILA.R
a9f90dc40090dd99d874c300f08510d2 *R/EntropyHOMO.R
29a8909944db2a2b546051d322d19c50 *R/EntropyMUS.R
9c7cc64275ed47cda65cba6ab25e940a *R/EntropyRATTUS.R
3fa4e36b5aa1d36833062ae0597b7377 *R/Hmemory.R
7c302f07535c9d1cffdfacbdcac2e791 *R/Hread.R
58f034226109dc7a3be79c42cd89280a *R/JacksonParameters.R
48557196639754c865b40deed2906fa6 *R/MEET.R
705d8c6baa83e28d9b13d7e4b1724ddc *R/MImemory.R
698ff2988deaddd48c65bf306de0580e *R/MIread.R
7091ed84d7efde9fe99dac7ed8fc0a64 *R/Model.R
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4f216e3558dd0ffed86adca973f23c56 *R/ModelEntropy.R
292998c1fa1a6a808b3ff86fd30db0cb *R/ModelMATCH.R
595c28d3e4528dd33c6131ef699b2b99 *R/ModelMDscan.R
95534c28e3474b2e4878cf12e2df4329 *R/ModelMEME.R
278f71c5e41f1c34dec5b756ac57e52a *R/ModelPCA.R
6f7aee0ef877537341771a2848946850 *R/Models.R
30ea088784dec75d009e73278ed6b360 *R/ModeltransMEME.R
cf5ba2e3a41abfaa39fab955f4faa11d *R/PCanalysis.R
e109ce6037ed66028f0e2e81037d3794 *R/PredictDivergence.R
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1a86751be77aeffb8fcb7681a72ff3b5 *R/PredictMATCH.R
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4871aa5ec76ee69f74ff2eb809a60484 *R/PredictMEME.R
4f8da46347a32aeeba9b3a2c0373bef2 *R/PredictPCA.R
572077dbd36d0904a80c4ae69d9a3949 *R/Prediction.R
24b6e719bf8ad7959891025a94a00c64 *R/PredicttransMEME.R
363b8b8f9ded90e0826a11c5f366bce7 *R/QresidualsDROSOPHILA.R
172f759f067dd7b4a19b1eb653b97d38 *R/QresidualsHOMO.R
6e4284ab29ed9b99635124963163cc16 *R/QresidualsMUS.R
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4e2455400014d8af9fd30fcc6c14fcde *R/QtoJackson.R
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3dadd171a40e57cab3f6c33e7cc856f9 *R/Read.aligned.R
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da986c64cdddbe3f555c7fee33588eb6 *R/correction.R
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2e543544350ca9d9f1a04ef42eca3935 *R/correction.redundancy.R
3027d57294e00fc93107a95a02a1e451 *R/correctionaprox.R
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e23165b49973a0344766cf82475e74ed *R/divergence.Shannon.R
08498ee17833972fa70431671a617537 *R/entropy.Renyi.R
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2b4491fba8936bddd4413b2c83d51c42 *R/entropy.corrected.R
29c50d8ae0276c587b4fa591215b73a3 *R/entropy.joint.R
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107ed6b54cc92522b1a07d2e18b357c1 *man/CalculInformation.Rd
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3fb1a85719541e31524c59bfe38976ae *man/CalculRedundancy.Rd
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8309b50bfbfffb19756972a5a7ebfbf0 *man/CalculSimilarity.Rd
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b943b2d7263dfd0f55c6739b2b73f091 *man/DivergenceDROSOPHILA.Rd
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692f54903ba37561a4349db7a2f78423 *man/DivergenceMUS.Rd
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f283eeb213aee5e2d3cb1a9993224fa0 *man/EntropyDROSOPHILA.Rd
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905d2a1ce2641281a87e434a8ed8556e *man/Hmemory.Rd
7c6220cb8ef53574d44162c6d4c5b6d2 *man/Hread.Rd
77f017fcd489383acf82f11047c4ec70 *man/JacksonParameters.Rd
0ccdc460c448b4ed98c53d1add3c8d03 *man/MEET.Rd
9cae763e6e9b13eb16b6609d6f742edd *man/MImemory.Rd
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2ee157bd83495c995162285a30bf02c7 *man/ModelMATCH.Rd
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676aef26087b22f96f6aa66df69adec7 *man/PredictMDscan.Rd
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7fa7f028a35a63f9611ac07e2eeccd40 *man/PredicttransMEME.Rd
7b7915884e7416434821ceb2d4a85dce *man/Prob.Rd
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41ad54139726121b20f5a13a6595eddf *man/QresidualsMUS.Rd
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4cd32f6fe05022c8e8a1e0fc5e95a804 *man/QtoJackson.Rd
1023334ba9950fddd7626a4bd4fe6e81 *man/ROCmodel.Rd
222123d126073d324406d47ec76d5b58 *man/Read.aligned.Rd
04b48adb7ed96206a57438acd300b9fc *man/ReadSequence.Rd
5b0b9a14092916f836016c87b7456a90 *man/Sequence.Rd
5ac41b3cdb66d479e168e0a7cfe276b5 *man/TFlogodds.Rd
6515c7a2b6da7f07544a696fbe0c465d *man/TranscriptionFactor.Rd
4fd6a9fadb4dd15698bd78c38e33ca69 *man/align.MEME.Rd
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ce483683771d364ac5518cffaba6e80a *man/align.muscle.Rd
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72a5e02e29c67e16cc03dc0c2a496f07 *man/correction.Rd
3183972a2c9d155eb14ad31558ca9d7f *man/correction.entropy.Rd
1e5bccaf61f230d07532331cfe23ee6d *man/correction.redundancy.Rd
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57907cb305f6db47fde6f590588c1196 *man/diffInstructions.Rd
63a0b7fa4839ee8cb3a6f41c312c1657 *man/divergence.Renyi.Rd
cbfe7a41d2e6d4c5876394dd0df44282 *man/divergence.Shannon.Rd
4e74cb93e713386af949a1342cbbe0fb *man/entropy.Renyi.Rd
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42847971580eabd862ce44d43e546e95 *man/entropy.corrected.Rd
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2f7339f5f93e4874e1578ac67b6d6ccc *man/numericalDNA.Rd
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b9ede141aa8a81605fa852c5d8243a93 *man/scoreMDscan.Rd
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971212895aafe8ac515c4c3c06bc775c *man/writeMEME.Rd
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21ee72f759378b0e19f899ca464feddf *src/correctionredundancy.c
d5e0728938ed41cc55e54ff166939682 *src/divergenceShannon.c
00be726ad7189d22df5ed14ada3308e9 *src/entropyRenyi.c
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852b703f53d7dd95bb78bf5a697580eb *src/probability.c
89b33d11548d5a92725897145cfec7c1 *src/probabilitycouple.c
2a310cde142dda66308f1a1fc201d518 *src/readH.c
