8ce6e38eaa48da784b88d37d903fb7b6 *DESCRIPTION
0ad021eda9b6c5486492614af28ebdea *NAMESPACE
91fd33501a98a548bdb12d7203853a04 *NEWS.md
fb6a110c0737d1391381cc563eba175a *R/Cube-1LocusTA.R
f14d2c5756306404f629ef11b99b61de *R/Cube-2LocusTA.R
e31c5fc586705628e9612c7426b64d06 *R/Cube-Auxiliary.R
d463b31334b40140aa085ff237143439 *R/Cube-CRISPR1RA.R
7d459533feabc86355d6033b84f866d7 *R/Cube-CRISPR2MF.R
3580411a3fcd3e6b927c21acee8e941a *R/Cube-KillerRescue.R
d373f3344e8f9d5b6ec1bf05f4eea568 *R/Cube-MEDEA.R
1950b9317c59c861af27ed2fe11b3da5 *R/Cube-RIDL.R
dc4cfec7e4afc7a9e4aaedab9c6bb8b8 *R/Cube-RecTrans.R
5d73a9c0498f0ec2632417def820d570 *R/Cube-SMendelian.R
daa2d6e866cf4fa303dae1175853590a *R/Cube-Wolbachia.R
0af890bc58407acbaafa6cb013f348db *R/MGDrivE-Auxiliary.R
bd78c4bce2a625c45b6869b23686a0a1 *R/MGDrivE-Graphics.R
578d28deaa573ee66931d7e8a19bb2a9 *R/MGDrivE-Releases.R
22b6a1b320db18555744f26a6b41f678 *R/MGDrivE-Setup.R
e66d3dfe86a11b195cf7245a08810af3 *R/MGDrivE.R
68fc22cf8447828ca5ea408dd51c6ecb *R/Network-Class.R
37bf4d2f9f29caf45a7a4726ca0cdce8 *R/Network-Migration.R
838521f41eba2475cc9d28689f26e2a6 *R/Network-Parameters.R
601edd6f8c7a7c12127712d3e488865f *R/Network-Simulation.R
7ae44932a8301a3b39882e66bba6c9ed *R/Patch-Class.R
c083c79ab2ee8540c887af933493f6e0 *R/Patch-Methods.R
de1d15b7c210f9151b9272a3c93477ca *R/Patch-Migration.R
f3fdea63663971b3a01bea88842b5cc5 *R/Patch-Releases.R
cd2068fa9db8f177492b89692923cc54 *R/Patch-Simulation.R
7a2d2fd1c732af9279032f41a73cdc24 *R/RcppExports.R
d97da593ac5cb4b1754e4c131d2b4a6d *R/data.R
ab0f040bf834a5ffc643bb63c15117b8 *R/zzz.R
8ee715c945e4d12f8521d268411ae0e2 *README.md
da10a2a2b1ff6ac0d414e5f2f7adb76b *build/partial.rdb
110c599292d9800d65062e9ea2a51603 *build/vignette.rds
39228ae9b06b3c1ae7f9a5c836e8634a *data/kernels.rda
749d2b032145ed3fbf34c79f73855af3 *data/moveMatAll2.rda
d77fe8fb07a734c26150bec0635b3aec *data/moveMatCascade3.rda
036eca9d2e5c64ac41f990e57728e81d *data/moveMatDiag.rda
b89038126ded89c387595e7ac13e228b *data/moveMatDiagOneCity.rda
181924774adf2d483b6f166ae67cae3f *data/moveMatDie.rda
f08970e2781c874db1dd53c1d7d8c054 *data/moveMatIndependent3.rda
7a7fd0b0d992edfed21df5ba50a0cf3a *data/moveMatMixedSpil.rda
349374cc0d220d2ca4dd73605ed27d96 *data/moveMatTaleOfTwoCities.rda
1808f2dc519c0d94c2ab2d89ceebc4e3 *data/moveMatTriDiagonal.rda
a119ca4fda39ae73eaa7b4d71cd52463 *data/moveMatTriple.rda
5e50dd1a01478b7365555eacc3e62e1f *inst/CITATION
ad8bb7dac6c18bbda30f0baa74aa9c09 *inst/REFERENCES.bib
e38eaffd2361c0ce50d5bffb582c9403 *inst/doc/mgdrive_examples.R
2cb06f491994ca9c37f1e04ae26a19de *inst/doc/mgdrive_examples.Rmd
ddb9262d1ea6efef743fe1468c59a05b *inst/doc/mgdrive_examples.html
cd459a99e59bdeddfed47879eda8132c *inst/doc/mgdrive_math.R
b95ae9cabe35e69a301970e68262b942 *inst/doc/mgdrive_math.Rmd
556a6a1b5ddc93b35d3cba5e7e020386 *inst/doc/mgdrive_math.html
d889b7080323b2b5bdfff8967a24e6c7 *inst/doc/mgdrive_run.R
2c644bc6ac0eb14e714785fba1eedced *inst/doc/mgdrive_run.Rmd
bff9435f83ee7e806fa8e6823044e79c *inst/doc/mgdrive_run.html
922101e3656cd86be76878c16be95650 *man/MGDrivE-Cube.Rd
c0f40392f5060dd9ea6a75f5d5fd544e *man/MGDrivE-Model.Rd
b1225d098e3e3128413db90424c9c459 *man/MGDrivE.Rd
d81f1721dad6386130cdc5e13ef5cad3 *man/Network.Rd
7b4491cad9ec850ae24ef1b106ece634 *man/Patch.Rd
c95cdacfc3941be7154dc0614ee09698 *man/accumulate_ADMnew_Patch.Rd
bb8991fcfd91b7ac02bc20f97aef79fe *man/aggregateFemales.Rd
f892473b4c32a7d93177f90edd8772e0 *man/aggregateOutput.Rd
e04677f018fabb11e0237cf218e855b3 *man/basicBatchMigration.Rd
c3450d07bc1a8c24f1b2052531a4e2d2 *man/basicRepeatedReleases.Rd
0395ece1b74ae05136bdba7f9f0ac874 *man/calcAquaticStageSurvivalProbability.Rd
64e8bbdf3bee2ad817e301be81e6e00e *man/calcAquaticStagesSurvivalProbability.Rd
1a33e2faf38f0c83732f773f8770fc1a *man/calcAverageGenerationTime.Rd
7cb960815241864eb29285f0683f02b8 *man/calcCos.Rd
5bfd067152a98e9ac709089c95c13327 *man/calcDensityDependentDeathRate.Rd
9bed8374cad0c0e773a902fb4a2b0b0d *man/calcExpKernel.Rd
dca676a3b80c9e3a5856c10de39220c3 *man/calcGammaKernel.Rd
273df8f11461612a366372fafe2df088 *man/calcHaversine.Rd
2961ece479872578c8727d569923de57 *man/calcHurdleExpKernel.Rd
a90eefb30829ee5d4cbbb38fc1175e34 *man/calcLarvalPopEquilibrium.Rd
c4828d0084810eaa0b3ba6fdc6b2c246 *man/calcLarvalStageMortalityRate.Rd
48a2dd2e699dc4721e29882120cb956f *man/calcLognormalKernel.Rd
93cefecfa8a3588353b20fc3f3665a43 *man/calcMemoryWindow.Rd
932a6777f798fa06fe4e8f12d858242a *man/calcPopulationGrowthRate.Rd
8349fe42c67f1cdab1866d2c994f2819 *man/calcQuantiles.Rd
9882ada2728cfff5c721e49483901567 *man/calcVinEll.Rd
32539e7dc4a9945a86d82041c7e83c66 *man/calcVinSph.Rd
d49f28eec60cfed21c56f2b19c2d122b *man/calcZeroInflation.Rd
25f6fcc712a3369bb65edac01a48abf4 *man/close_allConnections_Network.Rd
290723a658a2c3fa5ed3ad7a40045db7 *man/createNamedPopMatrix.Rd
a0995f43ee503547da9c9a222a4668bd *man/createNamedPopVector.Rd
f6e56c33064b0ed9e444a6990236e349 *man/cube2csv.Rd
2e1721b68998a74f3183e3cdfc6d6fd1 *man/cubeHoming1RA.Rd
86a7edd12b6f80d61954b4170e9b4f87 *man/cubeHomingDrive.Rd
fefcf80c4a687815663ad91888a30634 *man/cubeKillerRescue.Rd
07bfa35f2e44b69f19ba398277fb45d1 *man/cubeMEDEA.Rd
7a6da2d2c18ff062e8657efca5c2925d *man/cubeMendelian.Rd
575e2b8e12eba2aa2e4470e4f49dab49 *man/cubeModifiers.Rd
33bb98eff6a33602916d0ab846066ec3 *man/cubeOneLocusTA.Rd
925430140e117a5d047e0e0ab5d3572f *man/cubeRIDL.Rd
576c1fd2d47558154f56aed68c4e2acc *man/cubeReciprocalTranslocations.Rd
bdb8c35d42ad86aa64133c719e373161 *man/cubeTwoLocusTA.Rd
3c9b63964802f3e44a4c0d5bc06cc8c7 *man/cubeWolbachia.Rd
b72ea20d7dc585d2dc0515c374b695fe *man/eraseDirectory.Rd
133205b9bd84d3e1cd498d40d0ab0efe *man/generateReleaseVector.Rd
db4a6b7a5a9c74a497928612fa1e5623 *man/getOmega.Rd
1a1421a3d15dd4882f85c306956f2fb3 *man/getOmega_Network.Rd
b8b10d8e7c240ab465d3817114bb3d7f *man/get_ADMdly_Patch.Rd
c66c661e3eb0ddfefdc78331d42630e5 *man/get_ADMnew_Patch.Rd
bce8c56ddcec4e52b0988c8b34380d6c *man/get_AF1dly_Patch.Rd
c55ae7ab812f8bb385fba2c6e70cbc2d *man/get_AF1new_Patch.Rd
a54099be59303fae7a1e5b1af787b618 *man/get_AdPopEQ_Network.Rd
f11f527586fc7702ba7d164d8ed8727a *man/get_EGG_Patch.Rd
f6b9da1f1e66004d870611d45ea3abc7 *man/get_EGGdly_Patch.Rd
497ce4f2848613055e60c2449f7c081f *man/get_F_Patch.Rd
d3e7bb6760d83344ab207e318135a0b5 *man/get_LAR_Patch.Rd
78946f30a4182d1b3fe24f3917af5ad3 *man/get_LARdly_Patch.Rd
a4ba58df76e353fb60ed88fb2e7438f4 *man/get_Leq_Network.Rd
e73dd66ee987497927ec97fbdf6c9767 *man/get_M_Patch.Rd
5547ebda710a2be95a0cb23622691557 *man/get_NetworkPointer_Patch.Rd
e928659bfeddd4c4d3e9b3a8f67bfe88 *man/get_PUP_Patch.Rd
f080f70ce189735a6faa29410cd08661 *man/get_PUPdly_Patch.Rd
8186d6ffb5c88c1b34b2e6d93a8a24a0 *man/get_alpha_Network.Rd
d1860cd7f33608d5680e1e1231c9587b *man/get_batchLocRow_Network.Rd
9165e3c35751dbe4ea4e2f07d6c730f2 *man/get_batchProbs_Network.Rd
1bf645a0db480ec7be551a655bc19b9d *man/get_batchSex_Network.Rd
05fd67838cb51c2d8066cf9bc38da494 *man/get_beta_Network.Rd
b4e9e78131c8119346a165a57b394027 *man/get_conF_Network.Rd
3b919d2feececc290629c6c697f27581 *man/get_conM_Network.Rd
735e7daa2e5fe22581973a9ac9ad58b8 *man/get_dayPopGrowth_Network.Rd
8a1b8e19ef815b7ccc83334d3f8abba0 *man/get_directory_Network.Rd
98a052abae44b5da7d80de92960956c8 *man/get_drivecubegenotype_Network.Rd
639ce1bee0ef39d83ac75462f33ace5c *man/get_drivecubeindex_Network.Rd
91e69e9410ff0043882fc7ba5c39fa66 *man/get_eta_Network.Rd
d6a9da9563d8347d6c770591c310e2ae *man/get_femaleMigration_Patch.Rd
3ac3f69255cc1d1318d5a5f6d3843d4f *man/get_g_Network.Rd
1ff36dff73297703fd4029b1844bcb49 *man/get_genPopGrowth_Network.Rd
bc1ad18f21333aee6687aeb3812f2005 *man/get_genotypesID_Network.Rd
ee0e0300bd587a9ffa6bad6a75a38f73 *man/get_genotypesN_Network.Rd
5b003f186d2dd685495688103c36d7fc *man/get_maleMigration_Patch.Rd
f8d62ec1ed9d74646d1086aea3d3aada *man/get_migrationFemaleRow_Network.Rd
68aaf08cb5238c664ea136257e03bf59 *man/get_migrationFemale_Network.Rd
77f83337e4928656adeb3951e4b4069e *man/get_migrationMaleRow_Network.Rd
3dd3dbad11da6366fca81593f1dba391 *man/get_migrationMale_Network.Rd
4fbef0c9c4a24d0843ed61b6273f6aa6 *man/get_moveVar_Network.Rd
e6e1962b80fe05dff64c29119aa73ca3 *man/get_muAd_Network.Rd
00f81447836a2e7236656ca507866661 *man/get_muAq_Network.Rd
4ff17d5bcd08cf3b0f26cd487830af86 *man/get_nPatch_Network.Rd
f99322a2c8158ee264abc27b07aa139a *man/get_patchID_Patch.Rd
d295bb1bffedb5a2be90f18078c1a743 *man/get_patchReleases_Network.Rd
9f781475ee82ced1e4ddc4ae77d9322e *man/get_patch_Network.Rd
021d7bb0b7647c65c6d05b0997031a85 *man/get_patches_Network.Rd
2d603040a92c10985e11a1bd50e997cb *man/get_phi_Network.Rd
43b2d56114dbda6297798d4545769ffd *man/get_releaseType_Network.Rd
1dc62ddf81988ea9bf478b01b1d6efaa *man/get_s_Network.Rd
90ebfc1f2d0be6c32edf84ed196e49af *man/get_simTime_Network.Rd
3e384144d47284be10499fe9a80569e5 *man/get_tNow_Network.Rd
3de89920431a170c4870cffc26598ee4 *man/get_tau_Network.Rd
210609e3c648368d98612c77d66052fa *man/get_thetaAq_Network.Rd
fefeb175fb28f16f17353d906d9a6993 *man/get_timeAq_Network.Rd
efd29ef5b0ab26de9d1f2e9dd6ee6fd0 *man/get_wildType_Network.Rd
3f675c3f7b5cd0b54ac02e4a2fcb0e63 *man/get_windowSize_Network.Rd
0378c3c9c1f96cf85efd34458866e075 *man/get_xiF_Network.Rd
42c8fbff52dc578ebb33aef70870b252 *man/get_xiM_Network.Rd
2afd5e380cb8903b050f14439a36fb97 *man/ggColUtility.Rd
86624e3e32c29f9230263f3f47f99dd3 *man/initPopMatrixArray.Rd
10da4430b383beecc287f3926f0f39bc *man/initPopVectorArray.Rd
398ac09f6806e5a20057d2397f73346b *man/initStagesDurations.Rd
23e9c72cf4a0d8099697d47846a0d036 *man/kernels.Rd
85a21be4f655968fc20bded097a4c261 *man/moveMatAll2.Rd
05eb27622a8586da42fafe31a6da88bd *man/moveMatCascade3.Rd
fa1e65458b7b3dc46e2d725a6713e0d5 *man/moveMatDiag.Rd
3fdcbc0746ea516d01408c27b2547341 *man/moveMatDiagOneCity.Rd
651c9e4dbad896f654e8f2893ef84364 *man/moveMatDie.Rd
1587c229ff4d08678a492cfb7d56bfea *man/moveMatIndependent3.Rd
673df021952dc81dc4d692fe8b41144a *man/moveMatMixedSpil.Rd
3369c2ff9081e1e0fb3e40c9421e4124 *man/moveMatTaleOfTwoCities.Rd
fe71c7b6ce2525a45e6792b6acbe359f *man/moveMatTriDiagonal.Rd
633c201878462b688ca3d3af44957e89 *man/moveMatTriple.Rd
43e64ec45a04f2c2eba9d9edcbc63f5f *man/multRun_Network.Rd
fda55656e7f47721d3535938bb781ea3 *man/normalise.Rd
998873d46a7112ef58daff00712d4e22 *man/oneDay_Migration_Network.Rd
50d949aafe68833d0aa0cbbcf3d3b48b *man/oneDay_Network.Rd
d25908f5feffdcfe3d014cf97e20b433 *man/oneDay_PopDynamics_Patch.Rd
235d795d70a953e10196813f4cfaa8aa *man/oneDay_admPupating_deterministic_Patch.Rd
2cd60915d48f8053c4fd737740e40737 *man/oneDay_admPupating_stochastic_Patch.Rd
dd28f1a0e114561b3fe9673f425579ca *man/oneDay_admSurvival_deterministic_Patch.Rd
28cba39532fbbc91ffd2747f0498d836 *man/oneDay_admSurvival_stochastic_Patch.Rd
fd29e9b2c41271292984411d3dedf202 *man/oneDay_af1Mating_deterministic_Patch.Rd
2db43931a5ff1af7e08c589940a9883f *man/oneDay_af1Mating_stochastic_Patch.Rd
e7abbc5043a48fb8809ff23200fd69c9 *man/oneDay_af1Pupation_deterministic_Patch.Rd
7a20d0c0abdd3802b6c2960474d26c45 *man/oneDay_af1Pupation_stochastic_Patch.Rd
b8d22272dfa6a6832740426316030d75 *man/oneDay_af1Survival_deterministic_Patch.Rd
81678f207e37e1dc093604273b833ff5 *man/oneDay_af1Survival_stochastic_Patch.Rd
2335a8607ea4ce7dd9f668deabb6e4b8 *man/oneDay_calcCumulativeLarvalDensityDependentFactor_Patch.Rd
bd766b0257c56f3ca6ebfba4fdc655b7 *man/oneDay_calcCumulativePupaDensityDependentFactor_Patch.Rd
b13a9071d525f4d2f7b14e1865a41bb4 *man/oneDay_calcLarvalDensityDependentFactor_Patch.Rd
3d5b5a25b8a10777a3392d1cf0b8c049 *man/oneDay_eggReleases2adults_Patch.Rd
64d90bdc66a443e95e69f93b9282409a *man/oneDay_eggReleases2eggs_Patch.Rd
1eaf41524883d94b81c190cb6a9ea187 *man/oneDay_eggsFract2_deterministic_Patch.Rd
ef084f9b330501c4b70e50872c450dec *man/oneDay_eggsFract2_stochastic_Patch.Rd
22c0367926eb12b1b83edd81e52b69ee *man/oneDay_femaleReleases_Patch.Rd
91ee309efc0dcff34ec1ca6b7fd4672a *man/oneDay_hatchingFract_deterministic_Patch.Rd
fa2be726dc0cb63f7c9c17211cd4f9d9 *man/oneDay_hatchingFract_stochastic_Patch.Rd
a96f4cde3158e8284433b0a012207630 *man/oneDay_initOutput_Patch.Rd
0dc83b4e7f8ad30919c02891907ed211 *man/oneDay_larHatching_deterministic_Patch.Rd
e770c0cbb49a9e6e8f1ba2c668d38208 *man/oneDay_larHatching_stochastic_Patch.Rd
4df260b65d34cba4b472e9cd222690ae *man/oneDay_larPupating_deterministic_Patch.Rd
475891e324d375d889c1ac073c8619f7 *man/oneDay_larPupating_stochastic_Patch.Rd
8c93a082b786a69a480fd0be75921a60 *man/oneDay_larSurvival_deterministic_Patch.Rd
e548c699575dec867fb80bba377c4191 *man/oneDay_larSurvival_stochastic_Patch.Rd
064eb8f63f8f7dcb596aa94409f0cd8a *man/oneDay_maleReleases_Patch.Rd
a37a4959239f8e4c3433f8f4cdda665e *man/oneDay_migrationIn_Patch.Rd
d210d4222208d48389db16070c84ff57 *man/oneDay_migrationOut_deterministic_Patch.Rd
30883717d1b9860e9b236254a468d324 *man/oneDay_migrationOut_stochastic_Patch.Rd
2a47d62c6db47c051fb7c6ab7da737ef *man/oneDay_numMaleFemale_deterministic_Patch.Rd
2a5ae978f1dd5478f868b7b40a9f0223 *man/oneDay_numMaleFemale_stochastic_Patch.Rd
e5b6a0003441315ae9041b9042c37ec0 *man/oneDay_ovipositG1_deterministic_Patch.Rd
5cbd75324a7a6e070fbb1252b595f9a4 *man/oneDay_ovipositG1_stochastic_Patch.Rd
3eadccb14e84d6d3d7e87d7d5f95db00 *man/oneDay_updatePopulation_Patch.Rd
d4f91d7fb62e85dad3f4fce67b3c7836 *man/oneDay_writeOutput_Patch.Rd
595a2906d5248b333603e5047a6a468c *man/oneRun_Network.Rd
8222112b7b27949fa4da930d4e689ba6 *man/parameterizeMGDrivE.Rd
8d2881803ea292a6a8b2a5aae3c53d4c *man/plotMGDrivEMult.Rd
a37aa7079294b80367d830bbea936739 *man/plotMGDrivESingle.Rd
ad42806b8a62d8a85e24edff31db4474 *man/primePopMatrixArray.Rd
4f22d486d7570ec33baa45aea67f2f61 *man/primePopVectorArray.Rd
cb21dc162b40d7a09de844f9c2013184 *man/quantileC.Rd
47f28adade81b7cf0fcfb359127aa76e *man/rDirichlet.Rd
1fa3ec14d64df9d80103c77095c61c73 *man/reset_Network.Rd
d86e5ede037d3052be24d59d66dcc0bc *man/reset_Patch.Rd
e64e7550ebcd719e75ecc16eb918398d *man/retrieveOutput.Rd
58154b8f3a95098260ed691997c72a2d *man/set_ADMnew_Patch.Rd
e4977d05698d8e7619a1399f62250723 *man/set_AF1new_Patch.Rd
99513186afe13e342ecf14fd4555974c *man/set_NetworkPointer_Patch.Rd
100e102cca3d49950a883a8824fceead *man/set_migrationFemale_Network.Rd
abfe2e90b0d80a35df85709f43ed9540 *man/set_migrationMale_Network.Rd
89aed0b2d6a59a7188e8c9efd0701f60 *man/setupMGDrivE.Rd
b969350bf45999795fc79b2ce5462fbe *man/shiftAndUpdatePopVector.Rd
ba1717112a6f854d399a1360a49b20e9 *man/splitOutput.Rd
48756e6b558bc88b0f7e74b1a5aa2cbd *man/turnStochasticityOnOrOff.Rd
5f602e7548c081b3044acf936ce1220c *src/MGDrivE-Auxilary.cpp
e06bf2457314360390b7d0a73f3691df *src/MGDrivE-DistanceFunctions.cpp
9e54703d94b6608d8e2fc2f1157cee27 *src/MGDrivE-Kernels.cpp
507d595bf56cf9e61e641f4d3bd66567 *src/RcppExports.cpp
4d8d067eaef70654f31a8c9b2471fb58 *vignettes/diagram.jpg
2cb06f491994ca9c37f1e04ae26a19de *vignettes/mgdrive_examples.Rmd
b95ae9cabe35e69a301970e68262b942 *vignettes/mgdrive_math.Rmd
2c644bc6ac0eb14e714785fba1eedced *vignettes/mgdrive_run.Rmd
