0da31b7e7da95a35ba383c4d4254a99e *DESCRIPTION
c080921cf96f1f577a822d72b971ce45 *NAMESPACE
5a89e17941cc8da24edd62bf33efc652 *NEWS
539ece22837b506a21aba3e4f42efce4 *R/Ancillary_Indicators.R
e7924c0158ea2334873bfc005506679d *R/Awatea2OM.R
7c58218e025bc34274cf6b02b48482d5 *R/DD.R
67edc4544c68d5aa5a8b55a88f09b885 *R/HCRs.R
02454fb43c5542f885e92db1ef06a09a *R/MSEtool-package.R
b3e573d194cee900a94ca011b4eb0aea *R/Make_MP.R
e8a20f61b20d6fde62044d7b4baac373 *R/Misc_exported.R
1558cfc36c454dd4ab5da8d039acaa6b *R/Misc_fun.R
29e31fcb31eb217af279bb5ed5022597 *R/Movement_calcs.R
0da5d73988ddb915a548083593ecde5e *R/SCA.R
74a1f9815f33252193a37462da8b3a5b *R/SCA2.R
1ba1fd3454a21f0b2a9645c33f457d62 *R/SP.R
49c54b02122e79d0e148509c9cf331b1 *R/SS2Data.R
ad95aa228ffa976672c731da2b0cf0a8 *R/SS2OM.R
fdf004328efa48ee17821331f6ad5e9e *R/define_S4_class.R
a2583b592cafcea49f5114b61d4a8ace *R/diagnostic_AM.R
2343ac5bfbf4d385ed31f021e9111935 *R/document_data.R
9c39cb427e193a3c129edff04af2143d *R/iSCAM2OM.R
b753c4559186e0a565c06f2b75407c8b *R/report_DD_SS.R
7a0e160b9c718db8fe5492a01bc2b2bf *R/report_DD_TMB.R
99c27888f5265f0bf323706274d61f68 *R/report_SCA.R
2657a66aa8e9450893cf77a350daae1c *R/report_SCA2.R
fd924293548f4e7819f4965aa8998983 *R/report_SP.R
384dc4a98bd57bb6630be87f7bf1ad99 *R/report_SP_SS.R
f235f18ceefc432990758fed69d5d6d9 *R/report_auxiliary.R
9754202b193bbcaa1a94fceadaf9f573 *R/report_core.R
9a41d6977ddd2bd3a4dc308e22bb998d *R/report_html.R
14627ab42fb96f0254a1280bc979aa92 *R/retrospective_AM.R
a3934b327586fb51ae40a845ed1cdf84 *README.md
defe05f483cd1154adbbafc9efd8ec99 *build/vignette.rds
f593bdd56b3a6e3c177188ab3a1cd0f6 *data/swordfish.rda
fb3beda1963f182d517b486026302f9f *inst/doc/Assessment.R
0e8a9a511e8ba9f4837c1a6152067834 *inst/doc/Assessment.Rmd
4a7dc71617a667ad05980a39b9df5bf8 *inst/doc/Assessment.html
71f8edb6b64b807f0406c7674f51c629 *inst/doc/MSEtool.R
45a80371d46f3683f831c771e689fb8c *inst/doc/MSEtool.Rmd
4061c3e708ba5b567a70bfed6e5cc61c *inst/doc/MSEtool.html
2c6e6336bfa7af3c9b203f88c420e6b7 *inst/include/DD.h
e02359ae8cd8b3fc2ceed57221994bed *inst/include/DD_SS.h
bcd6df0d7901dd3e1e37498c6af4bba6 *inst/include/SCA.h
238a50b0e08e68b1d04f06e05b227b87 *inst/include/SCA2.h
09be375c3a8cc602dd92c2e95da6ad5d *inst/include/SP.h
993afee49869f4699bfb4605fd5f3e94 *inst/include/SP_SS.h
5d8c961023dbd0d4db5209acd22e04fb *inst/include/functions.h
7376de2e74c9247d4c293d256aab983d *inst/include/grav.h
ac85dcb4aa46db68a5e941a9ec501315 *inst/include/grav_Pbyarea.h
9cfb6dd1d350139e8a08a8ab75f9d9be *man/Assessment-class.Rd
504cc92b30fcb9c79322e8e7e0f0de18 *man/Awatea2OM.Rd
8d8010ae0969434efc30ee8726dee024 *man/DD_TMB.Rd
01d8c8cda4e2b702a306ba1a96d613f3 *man/HCR40_10.Rd
9be1652126c6749de5b2a56e172103f5 *man/HCR_FB.Rd
05528929f3f8f817695aed3fb1ed703b *man/HCR_MSY.Rd
6914af3c55f4454c7a8f1b711aa15130 *man/HCRlin.Rd
13cc73a574c577c6ac207f270f0995d2 *man/LinInterp.Rd
4927623d82ed3085f0c76da8ef9280db *man/MSEtool-package.Rd
0dcd4cd8e4609673cea2249ea92fd530 *man/PRBcalc.Rd
947e3a40c4e827c9ee6413a8ff459936 *man/Probs.Rd
8fe93b1a7ec852ebfc9eb1770893c16e *man/SCA.Rd
00b52c13156e8ee1016297e55b068652 *man/SP.Rd
78a028300b113f4e9feeaf7405a90101 *man/SP_production.Rd
fe4d30516fc21e021d1e1921f41d921a *man/SRopt.Rd
6aee09b6c701b9ebfcc4c60e7354c226 *man/SS2Data.Rd
e791d60b579e946a0584abf42c053624 *man/SS2OM.Rd
c2f9a513a9ac31ec55f160760e86d172 *man/avail.Rd
39aaeeb633454cd78c58a6da5623fc6b *man/calculate_TAC.Rd
3ca54b6064cb3bd345171c18c6325850 *man/diagnostic_AM.Rd
cd403575f2b433e57735dc1efe4de4d1 *man/fetch.file.names.Rd
967aaf1cc8034ae4f8ccd7b27012294a *man/getGpars.Rd
d453607720f41255ac8c319acbec43cd *man/getSR.Rd
4df5c6c399a259a275506c9158ebd520 *man/getinds.Rd
b8fb316effc87b41300401968f3e0be7 *man/iSCAM2Data.Rd
be84d561493862ba6153fd6e6ac41483 *man/iSCAM2OM.Rd
41593c6edae4495fc57fc2a53e994484 *man/iSCAMcomps.Rd
ae1f23f01b9c0d3ab2506d5ebd4fcacf *man/iSCAMinds.Rd
df943b0db565ef88afea6bdd8fd4ecde *man/load.iscam.files.Rd
86404cc0fec201e88894d515af7b7d65 *man/mahplot.Rd
4ae9f64d95cc7f32c0d8b2432d608a69 *man/make_MP.Rd
579951bd9a7a40a2188464971f26521e *man/makemov.Rd
6dc5360f6357ee5decab9ca34649f912 *man/movdistil.Rd
7005bb5d40a4512b6c1fcb9e071bd121 *man/negcorlogspace.Rd
219b4788bdea414eeb18dcdd7a16855c *man/optSR.Rd
e799d1bb6aa9a47002a5a2daeab8dbff *man/plot-Assessment.Rd
1f736dcf63399d87e35634f189bd21b0 *man/plot_SR.Rd
d858b0be3d7685a4ea52e24f04770146 *man/plot_betavar.Rd
c4cb5bb4cfa389e02ea5319698ae9cc1 *man/plot_composition.Rd
f1f8d2ab8689178c4de189972a5cc3ff *man/plot_crosscorr.Rd
7ee2191abea0acc77a1d4ca5eb1e4d81 *man/plot_lognormalvar.Rd
903b70fab649f7da44a16cb9d229b322 *man/plot_residuals.Rd
e0a78fcda0f1b3bf37a6ce0a08710f6e *man/plot_steepness.Rd
df29220b7cb68805946e964a75091413 *man/plot_timeseries.Rd
4d6e187237104a734aa32fdb579b1e52 *man/powdif.Rd
ed137a3a8caf103c14f3e6d88bb7dbf9 *man/prelim_AM.Rd
1b9362d4cf109778b97393c153a0610e *man/profile_likelihood.Rd
8f9980d6d29142875d99e8d08216c717 *man/read.control.file.Rd
339c8c8ba7bf5bfb05e7acf15d507355 *man/read.data.file.Rd
ac1374b8188d587f82a146aefe4ea215 *man/read.mcmc.Rd
dc179c724f50afe2fba030091e34e7bb *man/read.par.file.Rd
952d1d14a37748553faab2ad04e6277f *man/read.projection.file.Rd
f81328c976bbf540540c5a9e917b41a3 *man/read.report.file.Rd
2d263b366d79772fccf5bb9de1562cb2 *man/retrospective.Rd
883f8b31a186099cfc3cc90eeb79fa4e *man/retrospective_AM.Rd
8b41862f6883e330a6722c6bd0e8939a *man/simmov.Rd
dfeaa365d6c65cd4487bae37ea79beb9 *man/summary-Assessment.Rd
4536c3bdb210cb49deb22b649b0deb5b *man/swordfish.Rd
6bcb0d85af7cdbd52def97ba05040fca *src/MSEtool.cpp
0e8a9a511e8ba9f4837c1a6152067834 *vignettes/Assessment.Rmd
b4a0bf41a1eaf1559efa8e3250bce96a *vignettes/DD_TAC.png
3ec197c7fe04d9cb496b1b34080251cd *vignettes/DD_Tplot2.png
bbdcdd2e86cbc88f32b7664d6dfe7a2c *vignettes/DD_diagnostic_AM.png
a91f511c35ab8c13652486a5d03352f9 *vignettes/DD_profile.png
aca8c73b11a1c272977c925edf833f69 *vignettes/DD_retrospective_AM.png
be67fe5fabbca2a8ddefee128df7be2c *vignettes/DLMtool_design.png
81f111de4f0d7e765db94fed2154df8d *vignettes/DLMtool_logo.png
2a6350673808da9e6e1f4f443950914c *vignettes/DLMtool_process.jpg
45a80371d46f3683f831c771e689fb8c *vignettes/MSEtool.Rmd
6f04e98d1655abb7d0772d36ef5c9636 *vignettes/MSEtool_design.png
