2fde8207811b258054eba9d1b0bb4fe5 *DESCRIPTION
330799dd11f5666d59cb68ef69b9afa2 *NAMESPACE
cb67561831993c6110c0241fd6865991 *R/ErrorCheck.R
ba7066c31830e079a380c3e86dda2f6b *R/GtoC.R
979e953c6df246f2b7e299138211d22e *R/MCMCped.R
f3adfe24383f808aeae7cbe1d4b51b4b *R/MLE.beta.R
a59bdc6f556384931e70abbd102e1cc9 *R/MLE.ped.R
94c9b4378664ac8b1ec3fb696a75ce08 *R/MLE.popsize.R
cc074c5cce717b04482a872032911f19 *R/PedClasses.R
a4262dd0977c30e7c304b0beaf6fb781 *R/autocorrP.R
d887687e4db11fe06ad421b01bf01ef6 *R/beta.loglik.R
06c678cd1e8cf8025f533c63f5fd07e6 *R/consensusG.R
2bd470c5a8f6fdc64a69618f4b1f7b46 *R/extractA.R
9d9c1fc997230f3635eeb0f5fbddeb30 *R/fillX.G.R
87afc7a5e9ffc16d409f9f4406b09426 *R/genotype.list.R
2184d509a2999919f3823519da9fac67 *R/genotypeD.R
1aa132719864aab433b1edfd30fd24b5 *R/getPost.R
d2ec204ca0aafd44131e1f9d9aff8906 *R/getXlist.R
e920610d4d1515918238705bb9716e54 *R/getsPandtP.R
c821639ea44d6e62adcfe953a2a46a93 *R/insertPed.R
f81247549698a4ac8f4f4229527951d4 *R/legalG.R
75777aedab57feb08f6e3a2c398052fd *R/mismatches.R
4b1dd4484ede657772ce1f1008d1d73f *R/modeG.R
d246e8e53212066e4f9abf082aec0768 *R/modeP.R
62cece42aacff94269207fed537d092c *R/orderPed.R
0458860c8fa6425e2c9eaaf1fbf3aa59 *R/popsize.loglik.R
99086cbe950a08e25b700b81dfdc5a4b *R/post.pairs.R
d16aa077fe36c931247f7334377800af *R/reordXlist.R
cebf313cbbba4a1092515eb5e6b8ff52 *R/simgenotypes.R
45813cdf881c85868ea619bd4b068aae *R/simpedigree.R
5bfe82024a38d222aa1a319d88a5fa5a *R/varPed.R
2e8a7307ac27aeb3155c7e6e45704128 *data/WarblerG.tab
e74525942763a5721d9be48cfcb92d7c *data/WarblerP.tab
2e4fc447aa224e47ce3c59820c2a7702 *inst/CITATION
340921653c92c5ad83644d524ae7acca *inst/doc/Figures/Tutorial.Rnw
3e121f5e934bd4ad758f4ef31e7aac7e *inst/doc/Figures/buildCN.R
71e2d06f9cd5c0afdac82ce67f0e5606 *inst/doc/MasterBayes.bib
e79f1225a5b78b2544b39cd2dbdb9a32 *inst/doc/Rlogo.pdf
5cfde6ee3220fee81355904fa607073d *inst/doc/Tutorial-006.pdf
87305ac40af5ec32d1cb837a9e43c668 *inst/doc/Tutorial-007.pdf
01ddd376b49ee9d85d3a2aa36f7c1603 *inst/doc/Tutorial-008.pdf
1e5383b879b6645ca67cefc4c494eb75 *inst/doc/Tutorial-009.pdf
404befe9e849ceab3046e539906e2081 *inst/doc/Tutorial-023.pdf
320ba08e627e82790e6788b8f1aa3fb4 *inst/doc/Tutorial-028.pdf
d2e137019f19966b3b38018d4c0f0b33 *inst/doc/Tutorial-031.pdf
05e62b18bd313e20dc52371ce2dda9c3 *inst/doc/Tutorial-036.pdf
4a8a4cd848a267e5284bdd2ba34db021 *inst/doc/Tutorial-040.pdf
7fafe79929135bec5d8a1aebfea951a1 *inst/doc/Tutorial-045.pdf
417d737d44f66f0ecd51662de91429ab *inst/doc/Tutorial-048.pdf
af0ff9d519e4d2551088afc90cf73723 *inst/doc/Tutorial-051.pdf
61d0a3c697af55c5b4995cce60ee6da8 *inst/doc/Tutorial-059.pdf
c87a4ab24deceee767379beab3654f38 *inst/doc/Tutorial-062.pdf
48d66ad07e51347bb562b1c927ffb2bc *inst/doc/Tutorial-065.pdf
40b9f42f03c890b477af81c3a1895dac *inst/doc/Tutorial-070.pdf
63fa17eb33514a44a29699c0ff740eda *inst/doc/Tutorial-072.pdf
5bbff296a9e5adcc940fa86b28360c68 *inst/doc/Tutorial-075.pdf
189f0246479ba591f9bde47a378b61a2 *inst/doc/Tutorial-078.pdf
022469241acc9a7143fd29d1f8d0b546 *inst/doc/Tutorial-080.pdf
4505e90b26cb936fabcadc44ec935644 *inst/doc/Tutorial-083.pdf
84a3e27703db1221e2e8c0def4a5846e *inst/doc/Tutorial-086.pdf
5f6f384a6b6971c34e350de8a1b859f7 *inst/doc/Tutorial-089.pdf
a24dc1d63146a1b8b28c9c80dea78553 *inst/doc/Tutorial-092.pdf
dcf8e785f54d20ba54c8e33c3e717b4c *inst/doc/Tutorial-095.pdf
85050e45424b0b00b027fbbda46e9774 *inst/doc/Tutorial-098.pdf
27a3f9395b55c5866f2cddb2c2ccda69 *inst/doc/Tutorial-101.pdf
15de33499f7d92c283c5675d98082ad3 *inst/doc/Tutorial-104.pdf
2902e709f2472d373b12b4f0c3c22013 *inst/doc/Tutorial-107.pdf
d4ac2d2da3e36f6a010671fe81c81efe *inst/doc/Tutorial.Rnw
f9f9f9136f583c90670cf4cb3e29090e *inst/doc/Tutorial.pdf
d4ec3e1cb38b276f391b5466ee6a6fcb *man/GdataPed.Rd
4676c24e24141e932cfc85f00b05863e *man/MCMCped.Rd
ba613922bee17c5dd98666b04dc7dcff *man/MLE.beta.Rd
282b8fe41ffa1f0bd48e6d5ff8764793 *man/MLE.ped.Rd
f5d1fd4aeb183dd20304980a149920f1 *man/MLE.popsize.Rd
a3ebd0825a0d6708381ac6ce97c74ca2 *man/MasterBayes.Rd
ca65c34f8d51474805bdf0de0286f0f6 *man/PdataPed.Rd
75c117c9c5fca2bbd2d3d7261a84ef43 *man/WarblerG.Rd
19629bd67a044a0d944a1ec9707d2752 *man/WarblerP.Rd
47b8680ff9e7914e9429484ddfca09f6 *man/autocorrP.Rd
353e4e0ffc7845f380e5c77c06e87d57 *man/beta.loglik.Rd
28e43076d878de6afbbdadcb4d3f860d *man/consenusG.Rd
959340c6196df540c09e0cad36c21ae1 *man/extractA.Rd
10cf391d6a5cf0aa7f93bc09e7317b6b *man/fillX.G.Rd
b5abd55b7e966d2bfd7d2c30eaafbf30 *man/genotype.list.Rd
30de0c32c22baec3c2219a45bfaf0e8d *man/genotypeD.Rd
7ecfb61ea66a66d8c920149a612b9ffd *man/getXlist.Rd
149e54f6bd182a5eede3a5fad5262fdf *man/insertPed.Rd
a81bfddfd3ccce4e5dc30e6fb4ec4b60 *man/legalG.Rd
5c42bc06060f95d0c8d3f15fb9e38dea *man/mismatches.Rd
abf82c2d58cecbd1b58c3fdb7261ea49 *man/modeG.Rd
a845a9efc80ecadd124c908b576d0450 *man/modeP.Rd
405049e58c1cefa38269a62682201475 *man/orderPed.Rd
7ee68f158fa4a365c6bcd4aecbfafc05 *man/popsize.loglik.Rd
43d12411270f0bf2bc528df0a60be58d *man/post.pairs.Rd
c674a83d498e21e907be3cc27834b650 *man/priorPed.Rd
6981978c116f780b6fa660996ca54593 *man/reordXlist.Rd
3a816b294a119e8cb27798344398d3a9 *man/simgenotypes.Rd
ba4efcf9c60caee4761e6f154aff7603 *man/simpedigree.Rd
dc1390763b1c24b01e5b0540f0aa71ef *man/startPed.Rd
1f51868cf4fff030deefe400a6ad5e84 *man/summary.genotypeD.Rd
8693c897fe2a060c70128f4f48066ba3 *man/tunePed.Rd
6d4a4dfde04c5741f5be42f1a5e2cdec *man/varPed.Rd
647888e173efb943397bb91ce2665af9 *src/ErrorMat.cc
ca62c1fe48bb1a09c1a0da61948bc416 *src/ErrorMat.h
cf2eebba1716ee1f4f5e7879d6fb9cfa *src/General.h
698ad2f3bc4e9f4b4226711d6cfd05f2 *src/LikFunctions.cc
e4b93ae50e3842ec518fe3901302f320 *src/LikFunctions.h
e298dca6689febff024d5e6b88ff7830 *src/MCMCped.cc
04f10257483176b064b395a1fd829b86 *src/MCMCped.h
f09099a3c44237087e7c06a1f9a9d121 *src/Makevars
4262d71305a486ccc4d9d359f611c9eb *src/Makevars.in
af805e8036b72c69d6ea05723628f63c *src/Read_in_data.cc
928a3fe244bec84fff53f78511de11f3 *src/Read_in_data.h
f5791fe913eb0e5580a730b0bfb5a659 *src/SampD.cc
41ca3b4e78e7be46772b302b7b86a40d *src/SampD.h
6a8255dfc8fd0f0b2668c9ecf87aa623 *src/SampDomG.cc
fef97d2cf50458f31956db677dc9de51 *src/SampDomG.h
6ee603faeb5399d7a51fa4b283572140 *src/SampG.cc
013a031b6f7b874034f0228bf3b3610d *src/SampG.h
768aaab5a6a384a404901edba293da46 *src/SampGC.cc
9fc515a7ab8d556a5a779cbc545ae4b9 *src/SampGC.h
46e9a8bfa433e7985e07d4e90abc14a8 *src/SampP.cc
4e16866d8300cb4aabf9ddf23edd8293 *src/SampP.h
bd0fa612dbcd3fb60f582e03db25691f *src/SampS.cc
6a4d35b66243bef12e49a3669ca148b3 *src/SampS.h
82d58d81929209f30c9f181ebb706e9b *src/SpecRand.cc
1ef1f94296b1228311186044c5eafe8c *src/SpecRand.h
514000a986da5e497a7474e17379c626 *src/algorithm.h
8e75c9f3289df145948f38873f3d717b *src/calcX_G.cc
919a0356a6ce46ea15152d76f8bb4f16 *src/calcX_G.h
80b420bebda2285d18df2e4c8f41dce0 *src/calcX_GD.cc
8394bdaee9496974c1fac41754fdc68d *src/calcX_GS.cc
e946ddafe02e7cb388136f1a256a0b88 *src/calcX_Gcervus.cc
1c64343496d700114de40f9f699e3bdf *src/calcX_GcervusD.cc
0ff109f22a6e74e8abf35b1f9c3581bb *src/calcX_GcervusS.cc
2d5b725bcd4cd0978e3c3989221f6701 *src/calcX_Gmm.cc
da3e44a3ae5138017ebd112e8e7af5c4 *src/datablock.h
d489c387b86b46548f3f149fa6778734 *src/defs.h
b8d571faec40cde3269d98fedc8dbbab *src/distributions.h
8e2a5e1e884ef5dd8486920ce3646f30 *src/error.h
48b744b0048ed0c5ead00f097b20d2ca *src/fillXG.cc
407abbdcc6b202347ce0cc8279314dc0 *src/ide.h
034456b8aa57f55999322df68a9390ad *src/la.h
ef7b879e29de6e8e11527700115686d6 *src/lapack.h
3bc5f71ceee1a82f6f368b064b9e9dc5 *src/legalG.cc
1fd7567d0cfa15c48f5cab2e9053c194 *src/matrix.h
7ab16dbb6757a5de37dc7de9867a3c10 *src/matrix_bidirectional_iterator.h
f924b218cd6eaed80846ed0cba534b03 *src/matrix_forward_iterator.h
3dc8b8e303daa7ffdf3e2d29b2fa43d9 *src/matrix_random_access_iterator.h
126564c68437e76782a7a289bdc2b9cd *src/mismatches.cc
563652e8eec5ba3bd78ad6951a3ca27a *src/optimize.h
8aa95ee02342c8863d2d03b0e722aa4a *src/smath.h
d118bd7734aeeb91a7775d22d88caf99 *src/stat.h
