937c70beb0d6e6d4b0be163c19254f05 *DESCRIPTION
330799dd11f5666d59cb68ef69b9afa2 *NAMESPACE
cb67561831993c6110c0241fd6865991 *R/ErrorCheck.R
ba7066c31830e079a380c3e86dda2f6b *R/GtoC.R
979e953c6df246f2b7e299138211d22e *R/MCMCped.R
f3adfe24383f808aeae7cbe1d4b51b4b *R/MLE.beta.R
a59bdc6f556384931e70abbd102e1cc9 *R/MLE.ped.R
94c9b4378664ac8b1ec3fb696a75ce08 *R/MLE.popsize.R
cc074c5cce717b04482a872032911f19 *R/PedClasses.R
a4262dd0977c30e7c304b0beaf6fb781 *R/autocorrP.R
d887687e4db11fe06ad421b01bf01ef6 *R/beta.loglik.R
06c678cd1e8cf8025f533c63f5fd07e6 *R/consensusG.R
2bd470c5a8f6fdc64a69618f4b1f7b46 *R/extractA.R
9d9c1fc997230f3635eeb0f5fbddeb30 *R/fillX.G.R
87afc7a5e9ffc16d409f9f4406b09426 *R/genotype.list.R
2184d509a2999919f3823519da9fac67 *R/genotypeD.R
1aa132719864aab433b1edfd30fd24b5 *R/getPost.R
d2ec204ca0aafd44131e1f9d9aff8906 *R/getXlist.R
dc562ee1ca3afd1a598a6db94fa5eece *R/getsPandtP.R
c821639ea44d6e62adcfe953a2a46a93 *R/insertPed.R
f81247549698a4ac8f4f4229527951d4 *R/legalG.R
75777aedab57feb08f6e3a2c398052fd *R/mismatches.R
4b1dd4484ede657772ce1f1008d1d73f *R/modeG.R
d246e8e53212066e4f9abf082aec0768 *R/modeP.R
62cece42aacff94269207fed537d092c *R/orderPed.R
0458860c8fa6425e2c9eaaf1fbf3aa59 *R/popsize.loglik.R
99086cbe950a08e25b700b81dfdc5a4b *R/post.pairs.R
d16aa077fe36c931247f7334377800af *R/reordXlist.R
cebf313cbbba4a1092515eb5e6b8ff52 *R/simgenotypes.R
45813cdf881c85868ea619bd4b068aae *R/simpedigree.R
aeb8fd8ea2eef78cbc60a9cc984649b4 *R/varPed.R
78e5c8bae7d2fbf8bab82e0195daf9a3 *data/WarblerG.tab.gz
f69bffadd1a67de8ad5b557f311b5e0d *data/WarblerP.tab.gz
2e4fc447aa224e47ce3c59820c2a7702 *inst/CITATION
340921653c92c5ad83644d524ae7acca *inst/doc/Figures/Tutorial.Rnw
5e5a2c470a0b4fa8d48d9c8ca118a593 *inst/doc/Figures/buildCN.R
71e2d06f9cd5c0afdac82ce67f0e5606 *inst/doc/MasterBayes.bib
e79f1225a5b78b2544b39cd2dbdb9a32 *inst/doc/Rlogo.pdf
0aa50dace7500572e254e2571e199c8c *inst/doc/Tutorial-006.pdf
1a251b6423c7ea85bfb4267dec05c2aa *inst/doc/Tutorial-007.pdf
6e6bef8b68c44ea5c3850291b54bbda2 *inst/doc/Tutorial-008.pdf
9537d5be36da9d51a80259fe7da5c41a *inst/doc/Tutorial-009.pdf
6b8bf9d2be867fb15322aaa46fbafedf *inst/doc/Tutorial-023.pdf
98b0d0e226579a228cdbb2dd9428198d *inst/doc/Tutorial-028.pdf
ca3c42a487db6ad5ed314e6aa623b883 *inst/doc/Tutorial-031.pdf
3d210ed1465679c4c4d535db01c8367b *inst/doc/Tutorial-036.pdf
afb7257e5bb9bd0f29364699b01f2777 *inst/doc/Tutorial-040.pdf
9a53b900de36633eabfdd565b24c6d59 *inst/doc/Tutorial-045.pdf
a0b4a9e45dcbfefa86467acfb51d83a8 *inst/doc/Tutorial-048.pdf
a18796718f4daea774fa1098a56852c8 *inst/doc/Tutorial-051.pdf
9d1ebc1f46baf6b3bbd25ff4d0608af9 *inst/doc/Tutorial-059.pdf
7f12462b7be20c9453358ba795679799 *inst/doc/Tutorial-062.pdf
0a1a499d5fc2ea6cfa31d11c3cafefcc *inst/doc/Tutorial-065.pdf
8370dc38060d34f1e3124911fdc06790 *inst/doc/Tutorial-070.pdf
f0fb8d036212141cb6de7fb0c3b5c487 *inst/doc/Tutorial-072.pdf
f19c6bc1c277e2e2f8db44cd4eeef097 *inst/doc/Tutorial-075.pdf
78cc1c78a0a99d4ba656c7feea077fd4 *inst/doc/Tutorial-078.pdf
ec9e1de8d459520750f5c59079599d29 *inst/doc/Tutorial-080.pdf
3913b9ab9b3373d2c8adc0a785be9875 *inst/doc/Tutorial-083.pdf
8c5fe08fa12542e469fbd02da819cff9 *inst/doc/Tutorial-086.pdf
32db9110fd83c569534c59275d8a5c02 *inst/doc/Tutorial-089.pdf
438ebe7fbecd7c33019420bb64d77d25 *inst/doc/Tutorial-092.pdf
59cfb6410ae1cc4468a416dc1a337ba8 *inst/doc/Tutorial-095.pdf
29d61fcf618c51157522143acb2f7ad0 *inst/doc/Tutorial-098.pdf
eacf2671c0c270417c4c4d6fe58bb577 *inst/doc/Tutorial-101.pdf
f8c9373c548f8b0f339d95ddbc5727f1 *inst/doc/Tutorial-104.pdf
775c62aa3c5fc93094b766537766df0d *inst/doc/Tutorial-107.pdf
31131517c85516673c16d86040cd70d7 *inst/doc/Tutorial.Rnw
b66bdc578161760ddc60de0e237493b8 *inst/doc/Tutorial.pdf
b0c4c8595b11d5e1db4283c22981fbb0 *man/GdataPed.Rd
075bddc46665e763cc7997c0e0e1f582 *man/MCMCped.Rd
3a74c3519c4bcb8ba70f46c014b06eff *man/MLE.beta.Rd
520d592015d00452a06fd0150ab9e408 *man/MLE.ped.Rd
503543cd3bc9812834cd191e2e628f84 *man/MLE.popsize.Rd
1a607ff3cc953c15f2903db9e7c20c57 *man/MasterBayes.Rd
cd781632a1151d289cb83b31f8077ce3 *man/PdataPed.Rd
75c117c9c5fca2bbd2d3d7261a84ef43 *man/WarblerG.Rd
19629bd67a044a0d944a1ec9707d2752 *man/WarblerP.Rd
eba449643b4af1ee4f1a5b06cece0561 *man/autocorrP.Rd
3da30ec23feff3d49b1bf98cf462333b *man/beta.loglik.Rd
de9bd61f944cc6f4afca932cd93cbcec *man/consenusG.Rd
7979c80388b83da2192b88dd195078f5 *man/extractA.Rd
69cb21adb46b31876c8c21338d2d0389 *man/fillX.G.Rd
cc98cffc5bb9d71ee04b4b1fa833318e *man/genotype.list.Rd
a35d2926aabd9031a4459333e34c8b1a *man/genotypeD.Rd
add22ea53c11fb9ba49a8a0575a9e64c *man/getXlist.Rd
9d15b9ee5086078d9e65e194b3b2b6cf *man/insertPed.Rd
e65ce67e7634f9e408db1f1c73aaacab *man/legalG.Rd
eab7a454bfafbf5c17c29c231a827637 *man/mismatches.Rd
8adb35d3a90900431f4cca48a498090c *man/modeG.Rd
758aea94851cabaad9d51a87f23bf0ac *man/modeP.Rd
402b012a250a1c3562ab86f53a7e00cc *man/orderPed.Rd
eb59f34d3efa1ad387a291fae109a5a5 *man/popsize.loglik.Rd
60efb1765cc57d67b281de43b5414d90 *man/post.pairs.Rd
8ba5d60693f758609a55922f09457b5e *man/priorPed.Rd
52cadb98badfec7f18c148348a3c198f *man/reordXlist.Rd
c21a4611d7f96d6ac711747c92893405 *man/simgenotypes.Rd
ca29e7e0439cf41818152fa473e17314 *man/simpedigree.Rd
49a702dcbf8f9ffcd4515e5be4e2e7ae *man/startPed.Rd
daeac0108980d69374f39eea732037d6 *man/summary.genotypeD.Rd
bcb17ae115ca4547cafd3d953a8e3bc5 *man/tunePed.Rd
4f14c8b449dc33e9fe3050dfa30e4ad6 *man/varPed.Rd
647888e173efb943397bb91ce2665af9 *src/ErrorMat.cc
ca62c1fe48bb1a09c1a0da61948bc416 *src/ErrorMat.h
cf2eebba1716ee1f4f5e7879d6fb9cfa *src/General.h
698ad2f3bc4e9f4b4226711d6cfd05f2 *src/LikFunctions.cc
e4b93ae50e3842ec518fe3901302f320 *src/LikFunctions.h
8010dd8a61ab798000a874f916e264c9 *src/MCMCped.cc
04f10257483176b064b395a1fd829b86 *src/MCMCped.h
b3e224bb1a8452c3da347348b8e510cc *src/Makevars
43f4124319734194009441b15aff3695 *src/Makevars.in
af805e8036b72c69d6ea05723628f63c *src/Read_in_data.cc
928a3fe244bec84fff53f78511de11f3 *src/Read_in_data.h
f5791fe913eb0e5580a730b0bfb5a659 *src/SampD.cc
41ca3b4e78e7be46772b302b7b86a40d *src/SampD.h
6a8255dfc8fd0f0b2668c9ecf87aa623 *src/SampDomG.cc
fef97d2cf50458f31956db677dc9de51 *src/SampDomG.h
6ee603faeb5399d7a51fa4b283572140 *src/SampG.cc
013a031b6f7b874034f0228bf3b3610d *src/SampG.h
768aaab5a6a384a404901edba293da46 *src/SampGC.cc
9fc515a7ab8d556a5a779cbc545ae4b9 *src/SampGC.h
46e9a8bfa433e7985e07d4e90abc14a8 *src/SampP.cc
4e16866d8300cb4aabf9ddf23edd8293 *src/SampP.h
bd0fa612dbcd3fb60f582e03db25691f *src/SampS.cc
6a4d35b66243bef12e49a3669ca148b3 *src/SampS.h
82d58d81929209f30c9f181ebb706e9b *src/SpecRand.cc
1ef1f94296b1228311186044c5eafe8c *src/SpecRand.h
5362ed41a42ce34cf7817f6bfd988935 *src/algorithm.h
8e75c9f3289df145948f38873f3d717b *src/calcX_G.cc
919a0356a6ce46ea15152d76f8bb4f16 *src/calcX_G.h
80b420bebda2285d18df2e4c8f41dce0 *src/calcX_GD.cc
8394bdaee9496974c1fac41754fdc68d *src/calcX_GS.cc
e946ddafe02e7cb388136f1a256a0b88 *src/calcX_Gcervus.cc
1c64343496d700114de40f9f699e3bdf *src/calcX_GcervusD.cc
0ff109f22a6e74e8abf35b1f9c3581bb *src/calcX_GcervusS.cc
2d5b725bcd4cd0978e3c3989221f6701 *src/calcX_Gmm.cc
da3e44a3ae5138017ebd112e8e7af5c4 *src/datablock.h
5da8702c23b61c037f61dccebec10838 *src/defs.h
2acfadfc5d2ac2a532dc37e9c1f694b1 *src/distributions.h
b3e55dce9080169d7161c8a182f0c70a *src/error.h
608d26a537c7ca155b29fe3928544ef9 *src/fillXG.cc
0b1465cd303a39f5bd6ccb327e1e4b1f *src/ide.h
822c244edb53be2f4f8b1e831abe16fb *src/la.h
41a6caea698666bf78dda6d4d8b923e8 *src/lapack.h
b1cace7d456220e025e19c83841e88e2 *src/legalG.cc
41fec997312cdc497e0baf2f4b7934ff *src/matrix.h
7ab16dbb6757a5de37dc7de9867a3c10 *src/matrix_bidirectional_iterator.h
f924b218cd6eaed80846ed0cba534b03 *src/matrix_forward_iterator.h
3dc8b8e303daa7ffdf3e2d29b2fa43d9 *src/matrix_random_access_iterator.h
d2d2e5b0d4106a3562cbe80c1d611c6a *src/mismatches.cc
a111bb9e9e66be7cb044ad27ea675124 *src/optimize.h
8aa95ee02342c8863d2d03b0e722aa4a *src/smath.h
6f0c8e88a1aa10a5198551f9856ad516 *src/stat.h
