# Generated by roxygen2: do not edit by hand

export(load_bwa_assignment)
export(load_bwa_assignments)
export(load_gottcha2_assignment)
export(load_gottcha2_assignments)
export(load_gottcha_assignment)
export(load_gottcha_assignments)
export(load_kraken_assignment)
export(load_kraken_assignments)
export(load_metaphlan_assignment)
export(load_metaphlan_assignments)
export(merge_bwa_assignments)
export(merge_bwa_counts)
export(merge_gottcha_assignments)
export(merge_gottcha_counts)
export(merge_kraken_assignments)
export(merge_metaphlan_assignments)
export(plot_bwa_assignment)
export(plot_gottcha_assignment)
export(plot_kraken_assignment)
export(plot_merged_assignment)
export(plot_metaphlan_assignment)
importFrom(Cairo,CairoPDF)
importFrom(Cairo,CairoSVG)
importFrom(data.table,fread)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,select)
importFrom(grDevices,dev.off)
importFrom(plyr,daply)
importFrom(plyr,ddply)
importFrom(reshape2,melt)
