Package: NACHO
Type: Package
Title: NanoString Quality Control Dashboard
Version: 0.6.1
Authors@R: c(
    person(given = "Mickaël", family = "Canouil", role = c("aut", "cre"), email = "mickael.canouil@cnrs.fr", 
      comment = c(ORCID = "0000-0002-3396-4549")
    ),
    person(given = "Roderick", family = "Slieker", role = "aut", email = "R.C.Slieker@lumc.nl",
      comment = c(ORCID = "0000-0003-0961-9152")
    ),
    person(given = "Gerard", family = "Bouland", role = "aut", email = "G.A.Bouland@lumc.nl")
  )
Description: NanoString nCounter data are gene expression assays where there is no need for the use of enzymes 
    or amplification protocols and work with fluorescent barcodes (Geiss et al. (2018) <doi:10.1038/nbt1385>). 
    Each barcode is assigned a messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its target can be counted. 
    As a result each count of a specific barcode represents the presence of its target mRNA/miRNA.  
    'NACHO' (NAnoString quality Control dasHbOard) is able to analyse the exported NanoString nCounter 
    data and facilitates the user in performing a quality control.  
    'NACHO' does this by visualising quality control metrics, expression of control genes, 
    principal components and sample specific size factors in an interactive web application. 
License: GPL-3 | file LICENSE
URL: https://github.com/mcanouil/NACHO,
        https://mcanouil.github.io/NACHO
BugReports: https://github.com/mcanouil/NACHO/issues
Depends: R (>= 3.5.0)
Imports: utils, tibble, dplyr, tidyr, shiny, scales, ggplot2,
        ggbeeswarm, ggrepel, ggpubr, gtools, magrittr, knitr,
        rmarkdown, sessioninfo
Suggests: covr, Biobase, GEOquery, testthat
SystemRequirements: pandoc (>= 1.12.3), pandoc-citeproc
LazyData: true
RoxygenNote: 6.1.1
VignetteBuilder: knitr
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2019-10-11 08:23:31 UTC; mcanouil
Author: Mickaël Canouil [aut, cre] (<https://orcid.org/0000-0002-3396-4549>),
  Roderick Slieker [aut] (<https://orcid.org/0000-0003-0961-9152>),
  Gerard Bouland [aut]
Maintainer: Mickaël Canouil <mickael.canouil@cnrs.fr>
Repository: CRAN
Date/Publication: 2019-10-12 07:30:10 UTC
