c4959c6397699ad1dd30c01b4ae0e44f *DESCRIPTION
cc4a7a31eea294ae78c9151709b1c8e4 *NAMESPACE
6917711f87a6718f8b62cf170acb22fa *NEWS
b3f5c7065d67c7fa929aef85f1b609ba *R/NanoStringNorm.R
54684b5ddc44ba6cbece41fdf3967960 *R/Plot.NanoStringNorm.R
7b8d5ba13ae174fbcc82e3df0aa0b644 *R/Plot.NanoStringNorm.gvis.R
6f9fa8a2db6b6480bb7579a8757f251e *R/background.normalization.R
a4e6aace89fc1fcae5ce13eb465f249e *R/check.trait.values.R
b1b3018de0f8dc7e5c2a18c2f0046cb0 *R/code.count.normalization.R
07ce6d1edb6608d60f462e7555ce7650 *R/get.batch.effects.R
348ddcc0fae1517a27eba4295f277353 *R/get.beta.se.and.p.R
4d485053b4c6e64c30b59e7f271a3971 *R/get.gene.summary.stats.R
a62d0ef618ec9457e65b1f3b2b4fa5a5 *R/get.geo.mean.R
282cd18a502437319e05be719ee7fcb5 *R/get.mean.sd.and.cv.R
aff0ce6c8b1dbc61f8078f14b0157b4b *R/get.sample.summary.stats.R
54e2e107be81429e596530ca4194fdf6 *R/get.trait.summary.stats.R
e907c0bfb69d1474ea254af7ebfdbed7 *R/get.ttest.and.foldchange.R
9b24bfed375676f9da97d0d95f14d902 *R/norm.comp.R
b3198f8da37223a973e8f785b9984f29 *R/nsn.R
735348bf780a7fc948edc5f1c55b7e23 *R/other.normalization.R
3f58f50483ae77238bb652b99caca73c *R/other.normalization.quantile.R
d4f009fcda33051b182a42e2a7fba303 *R/other.normalization.rank.normal.R
53da0db87777dd9aa4681e34055832a2 *R/other.normalization.vsn.R
2c5d59d095260c5aed4a0bb1fd897d93 *R/other.normalization.zscore.R
03cc3c969746d97b95fbe7a87eec6877 *R/output.formatting.R
b60c264ace26a561324ba582ed99b857 *R/predict.concentration.R
59219b59f238e102bd4ad0e732c6bca8 *R/probe.correction.factor.normalization.R
db10ed12a28344f7038270e052b2b09f *R/read.markup.RCC.R
3102b4952f22af42c4aae9e7a1ceb1e5 *R/read.xls.RCC.R
c6c59fabccebab69644399cef90639fc *R/sample.content.normalization.R
d285b32a177a78681ac7a52f63b36a5c *R/unit.testing.NanoStringNorm.R
e33d4377d2803b3170cd524f984d5b34 *data/NanoString.rda
c3b9aeb26fb9bc8dea552b46dad1914a *inst/doc/NanoStringNorm_Introduction.Rnw
28ff86432e9e9fa23d445d4e31ac8efa *inst/doc/NanoStringNorm_Introduction.pdf
768c0f4312ad3ecd60dc8fdd916df0d6 *inst/extdata/RCC_files/RCCCollector1_rat_tcdd.xls
c294ebf5ea4165f6be0d42022f1419d3 *inst/extdata/input/2011-11-01_NanoString_mRNA_TCDD_anno.txt
56c447752ecbef7e70abccc2241499a6 *inst/extdata/input/date_data.txt
832891191c7f20e7c35908b42f518a59 *inst/extdata/input/mRNA_TCDD.txt
fe443f0b7ce16ab872e1bc9b59eeac4e *inst/extdata/input/mRNA_TCDD_anno.txt
b41bd548533cf972fcd89279d6e02ecf *inst/extdata/input/mRNA_TCDD_matrix.txt
0be120f3bf7f889974b161d7b2d02de5 *inst/extdata/input/mRNA_TCDD_strain_info.txt
56c447752ecbef7e70abccc2241499a6 *inst/extdata/output/date_data.txt
9fdcbb1a66de866cbefba2a05a333061 *inst/extdata/output/mRNA_TCDD_Batch_effects.txt
1159184937f1a52d70a06a50d63b5947 *inst/extdata/output/mRNA_TCDD_Check_Traits.txt
c7d44f1fbbd5cc7ea12271aeab114d9c *inst/extdata/output/mRNA_TCDD_Gene_Summary.txt
6736e41a94b84cb77a043b0b91d67a20 *inst/extdata/output/mRNA_TCDD_NSN_none.txt
b98039c38229e2cd2f40843f8283826e *inst/extdata/output/mRNA_TCDD_NSN_none_matrix.txt
ff75e97d16af10aa83628d49f5bc800d *inst/extdata/output/mRNA_TCDD_NSN_random.txt
1ad944a126aec63421a10addf795972e *inst/extdata/output/mRNA_TCDD_Output_Formatting_roundT_logT.txt
00cfae474d53c3a18a4a85f3410734d3 *inst/extdata/output/mRNA_TCDD_Predict_Conc.txt
edad64cf1353b57c84fd7088f5cfcb85 *inst/extdata/output/mRNA_TCDD_Sample_Summary.txt
c33c46fc00a57f88ce77449801b53319 *inst/extdata/output/mRNA_TCDD_geo.mean_Code_Count_Normalization.txt
7236a8e0f08d4cd79d0751366c27cbb6 *inst/extdata/output/mRNA_TCDD_housekeeping.geo.mean_SampleContent_Normalization.txt
c292aa96e386856dc030eb6164d985f1 *inst/extdata/output/mRNA_TCDD_housekeeping.sum_SampleContent_Normalization.txt
c4666d850e347d79a901c061d182d9f0 *inst/extdata/output/mRNA_TCDD_max_Background_Normalization.txt
1de1d7736c96894ab0c36ab450381c6f *inst/extdata/output/mRNA_TCDD_mean.2sd_Background_Normalization.txt
b506d2e99d8d6a001bb85a3d412cb8e2 *inst/extdata/output/mRNA_TCDD_mean_Background_Normalization.txt
874c86a567dba57bbe5b5817872e3492 *inst/extdata/output/mRNA_TCDD_quantile_Other_Normalization.txt
ab7463ad761d9219a4048ac28cca7794 *inst/extdata/output/mRNA_TCDD_sum_Code_Count_Normalization.txt
7aa2f1f75e27f8371297aa902ab45999 *inst/extdata/output/mRNA_TCDD_top.geo.mean_SampleContent_Normalization.txt
cc52030cc490393e7042453000932ca4 *inst/extdata/output/mRNA_TCDD_top.mean_SampleContent_Normalization.txt
f7d4dc942e543057f73e64a43d4cda5c *inst/extdata/output/mRNA_TCDD_total.sum_SampleContent_Normalization.txt
67c133f69169cf1cef7574f2cab0d2cf *inst/extdata/output/mRNA_TCDD_zscore_Other_Normalization.txt
a9e31d0cc6d5696aad9d4112f88ce662 *inst/scripts/create_test_input_output_files.R
353f74e95f34812d34e2f61e3764b149 *inst/unitTests/debug_test_probe.correction.factor.R
cfb80c71c0e6954bafdc43c88fb27d4a *inst/unitTests/test_NanoStringNorm.R
fe09c5ece6930db6a0ae63edfb6e1cdf *inst/unitTests/test_background.normalization.R
3d71115a00f80e7f282e9044e49a76fa *inst/unitTests/test_batch.effects.R
51d0f51aa876c592304b616366081600 *inst/unitTests/test_check.trait.values.R
1c0f608b83b4e8c92938929799195b55 *inst/unitTests/test_code.count.normalization.R
8b6c089d989418077b9035366918c9b5 *inst/unitTests/test_other.normalization.R
a4bbe68f97794bcaaefa42845f88118a *inst/unitTests/test_output.formatting.R
d2f7bcd825993e836fd15966181c9426 *inst/unitTests/test_predict.concentration.R
7f1b5e0f004a32c4a9487702ffd637ea *inst/unitTests/test_sample.content.normalization.R
018197498bb51370ea408375dc2dee3e *inst/unitTests/test_sample.summary.R
2025c3ed464472462fdabf8fecc5b395 *man/NanoString.Rd
dbd4d5afe0ec919e463d72aaa2e70056 *man/NanoString.mRNA.Rd
3e3081017370124bab58eeefa5ef7859 *man/NanoStringNorm-package.Rd
639719a5278b01197923895db47dd15a *man/NanoStringNorm.Rd
84c5c12934e5d9c7e7bcc2fdeb30f5eb *man/Plot.NanoStringNorm.Rd
76da89b83c9f431601085cafe77013e7 *man/Plot.NanoStringNorm.gvis.Rd
049640d4c2b56b6795f53eb9aabc9037 *man/norm.comp.Rd
cd2784711a37abeff4384b51ff64c85b *man/nsn.Rd
084ceea4fb4679a3e9623a4f01d3de69 *man/other.normalization.Rd
5a74e350bedba5ea4a0082fecfc3db7c *man/read.markup.RCC.Rd
cc6e001c938252a6588c77de7099d20f *man/read.xls.RCC.Rd
c86c9d88264b603eaf943ff90ee72621 *tests/NanoStringNorm.unitTests.R
c3b9aeb26fb9bc8dea552b46dad1914a *vignettes/NanoStringNorm_Introduction.Rnw
6e40f4cf141201651cb123486a07916a *vignettes/Rat_Strain_Normalization_Method_Comparison.png
aeae437cf5a4d99023240c34f081bff7 *vignettes/plot_NSN_gvis_geneStats_screenshot.png
a199f373c6ce6b0714d45cafb778bdec *vignettes/plot_NSN_gvis_sampleStats_screenshot.png
