7bf052f5d42f3cde7997266a5fb94f02 *DESCRIPTION
cc4a7a31eea294ae78c9151709b1c8e4 *NAMESPACE
54d579483d88ed1047bd970331fe0ff2 *NEWS
d453ed69342012c94b19dca8ad26dd2c *R/NanoStringNorm.R
865127e1f1c4da5ba119110390b78c6a *R/Plot.NanoStringNorm.R
9109f024f4bc79279396863d1f94c65f *R/Plot.NanoStringNorm.gvis.R
f9982bb0f1b2aa4f738b595970fc5d8e *R/background.normalization.R
36aeca48dfe96381f26f7f7ff09c497f *R/check.trait.values.R
ae2dafab77e05ff02d18e4e73aa73fb9 *R/code.count.normalization.R
140804acfc31df95d275d0dd308353cf *R/get.batch.effects.R
ac4877e176707a964ee2395e549823e0 *R/get.beta.se.and.p.R
353c04d10c1f5b3a28df350a47c58f6f *R/get.gene.summary.stats.R
668427751d31e7f0b0498b150ef0662e *R/get.geo.mean.R
2d044aab69c66d6b67411b9907d01121 *R/get.mean.sd.and.cv.R
b9b6e271f2e5cc2d17e699cef8f4e618 *R/get.sample.summary.stats.R
ec6dc51e28f3543a863acdabcd5a336e *R/get.trait.summary.stats.R
5bdc2282632e049493b16d4bc103b2ca *R/get.ttest.and.foldchange.R
40d9751120288f86decfc577e1a63db8 *R/norm.comp.R
264fd84997489303c144237fda080262 *R/nsn.R
6dd8e38a42a2c6c7a422c04a1970d5f3 *R/other.normalization.R
6397ee86566ccd99731af462eb2edafe *R/other.normalization.quantile.R
ddae789c28dea1d6250de9d9ae20ac6f *R/other.normalization.rank.normal.R
0aa233e406626bcaf7172863eaae2053 *R/other.normalization.vsn.R
8468bd84e90aea362f5c7c3d729b4b2d *R/other.normalization.zscore.R
a4bb12041d1733ae0d1037ed9dadc392 *R/output.formatting.R
6a21e39e5be73f62ea7efdc4e98b3e79 *R/predict.concentration.R
d17468cc8137665e1f01354db2810a82 *R/probe.correction.factor.normalization.R
e9bad9c1317aceb1e32c12417c2df90d *R/read.markup.RCC.R
871f66f4448500880d289d4c30075cd8 *R/read.xls.RCC.R
b0f94d158c8ea3510e38932b80c4e40d *R/sample.content.normalization.R
654301488595529b42d91d2476de9fda *R/unit.testing.NanoStringNorm.R
e33d4377d2803b3170cd524f984d5b34 *data/NanoString.rda
f017cf6d6d6aa2990a02ca7da6fd01aa *inst/doc/NanoStringNorm_Introduction.R
c3b9aeb26fb9bc8dea552b46dad1914a *inst/doc/NanoStringNorm_Introduction.Rnw
9274cb5a2f74f375c3a312c1f8e4243d *inst/doc/NanoStringNorm_Introduction.pdf
768c0f4312ad3ecd60dc8fdd916df0d6 *inst/extdata/RCC_files/RCCCollector1_rat_tcdd.xls
c294ebf5ea4165f6be0d42022f1419d3 *inst/extdata/input/2011-11-01_NanoString_mRNA_TCDD_anno.txt
56c447752ecbef7e70abccc2241499a6 *inst/extdata/input/date_data.txt
832891191c7f20e7c35908b42f518a59 *inst/extdata/input/mRNA_TCDD.txt
fe443f0b7ce16ab872e1bc9b59eeac4e *inst/extdata/input/mRNA_TCDD_anno.txt
b41bd548533cf972fcd89279d6e02ecf *inst/extdata/input/mRNA_TCDD_matrix.txt
0be120f3bf7f889974b161d7b2d02de5 *inst/extdata/input/mRNA_TCDD_strain_info.txt
56c447752ecbef7e70abccc2241499a6 *inst/extdata/output/date_data.txt
9fdcbb1a66de866cbefba2a05a333061 *inst/extdata/output/mRNA_TCDD_Batch_effects.txt
1159184937f1a52d70a06a50d63b5947 *inst/extdata/output/mRNA_TCDD_Check_Traits.txt
c7d44f1fbbd5cc7ea12271aeab114d9c *inst/extdata/output/mRNA_TCDD_Gene_Summary.txt
6736e41a94b84cb77a043b0b91d67a20 *inst/extdata/output/mRNA_TCDD_NSN_none.txt
b98039c38229e2cd2f40843f8283826e *inst/extdata/output/mRNA_TCDD_NSN_none_matrix.txt
ff75e97d16af10aa83628d49f5bc800d *inst/extdata/output/mRNA_TCDD_NSN_random.txt
1ad944a126aec63421a10addf795972e *inst/extdata/output/mRNA_TCDD_Output_Formatting_roundT_logT.txt
00cfae474d53c3a18a4a85f3410734d3 *inst/extdata/output/mRNA_TCDD_Predict_Conc.txt
edad64cf1353b57c84fd7088f5cfcb85 *inst/extdata/output/mRNA_TCDD_Sample_Summary.txt
c33c46fc00a57f88ce77449801b53319 *inst/extdata/output/mRNA_TCDD_geo.mean_Code_Count_Normalization.txt
7236a8e0f08d4cd79d0751366c27cbb6 *inst/extdata/output/mRNA_TCDD_housekeeping.geo.mean_SampleContent_Normalization.txt
c292aa96e386856dc030eb6164d985f1 *inst/extdata/output/mRNA_TCDD_housekeeping.sum_SampleContent_Normalization.txt
c4666d850e347d79a901c061d182d9f0 *inst/extdata/output/mRNA_TCDD_max_Background_Normalization.txt
1de1d7736c96894ab0c36ab450381c6f *inst/extdata/output/mRNA_TCDD_mean.2sd_Background_Normalization.txt
b506d2e99d8d6a001bb85a3d412cb8e2 *inst/extdata/output/mRNA_TCDD_mean_Background_Normalization.txt
874c86a567dba57bbe5b5817872e3492 *inst/extdata/output/mRNA_TCDD_quantile_Other_Normalization.txt
ab7463ad761d9219a4048ac28cca7794 *inst/extdata/output/mRNA_TCDD_sum_Code_Count_Normalization.txt
7aa2f1f75e27f8371297aa902ab45999 *inst/extdata/output/mRNA_TCDD_top.geo.mean_SampleContent_Normalization.txt
cc52030cc490393e7042453000932ca4 *inst/extdata/output/mRNA_TCDD_top.mean_SampleContent_Normalization.txt
f7d4dc942e543057f73e64a43d4cda5c *inst/extdata/output/mRNA_TCDD_total.sum_SampleContent_Normalization.txt
67c133f69169cf1cef7574f2cab0d2cf *inst/extdata/output/mRNA_TCDD_zscore_Other_Normalization.txt
d23ed8f302874ddae719366755d5be3d *inst/scripts/create_test_input_output_files.R
36f0b8fb41349ce86ffde00825dcba95 *inst/unitTests/debug_test_probe.correction.factor.R
2306e04e5754c95a31c0dbfaf016f444 *inst/unitTests/test_NanoStringNorm.R
c70cd044ddeb52fa8302cdf9ca644630 *inst/unitTests/test_background.normalization.R
7e9fcb935adc3060c1f179cf3338ab7e *inst/unitTests/test_batch.effects.R
e731e68730a85240cca141ec6f307d5b *inst/unitTests/test_check.trait.values.R
9de0a9deddb634f312fd361bf7f714c2 *inst/unitTests/test_code.count.normalization.R
4ca580537530eac142b33819717e0121 *inst/unitTests/test_other.normalization.R
d6fa736e3f75348ef2d8f5d46dadc104 *inst/unitTests/test_output.formatting.R
5ea44218451a358204035e1e5f03f214 *inst/unitTests/test_predict.concentration.R
00c4816b1da414db5cbc41ad3e84fe77 *inst/unitTests/test_sample.content.normalization.R
c924d572d479a3d367acdcf251b4ef90 *inst/unitTests/test_sample.summary.R
2025c3ed464472462fdabf8fecc5b395 *man/NanoString.Rd
dbd4d5afe0ec919e463d72aaa2e70056 *man/NanoString.mRNA.Rd
3e3081017370124bab58eeefa5ef7859 *man/NanoStringNorm-package.Rd
81f7dba4dbdf1212c1a23ca22db4de1f *man/NanoStringNorm.Rd
654bebc0fb991522bf1af4696c7721f7 *man/Plot.NanoStringNorm.Rd
76da89b83c9f431601085cafe77013e7 *man/Plot.NanoStringNorm.gvis.Rd
f19dc0081fcb12baae48910a7f921e41 *man/norm.comp.Rd
cd2784711a37abeff4384b51ff64c85b *man/nsn.Rd
a31564d8afe8e4460385e950c4fa52bc *man/other.normalization.Rd
0371a23494956466339490346c91499c *man/read.markup.RCC.Rd
579db3990f7782bc26483bab382ca64b *man/read.xls.RCC.Rd
e24fd464523aab8291515ee10c01c356 *tests/NanoStringNorm.unitTests.R
c3b9aeb26fb9bc8dea552b46dad1914a *vignettes/NanoStringNorm_Introduction.Rnw
6e40f4cf141201651cb123486a07916a *vignettes/Rat_Strain_Normalization_Method_Comparison.png
aeae437cf5a4d99023240c34f081bff7 *vignettes/plot_NSN_gvis_geneStats_screenshot.png
a199f373c6ce6b0714d45cafb778bdec *vignettes/plot_NSN_gvis_sampleStats_screenshot.png
