0333e7386a9aebc3ad799a4c78788c38 *DESCRIPTION
b1afb7148546fceca9d0c32637346185 *NAMESPACE
5c96a9764c799c62d9ae899842fd2d9e *NEWS
668a18f2a769e4ee1fc19b01f4996b4e *R/MQDataReader.R
4f7ada581b84bfcb8299d2c557a80e49 *R/fcn_MQ.R
1a000120ec079c9a68f9eb26c5f49f39 *R/fcn_MQalign.R
f98f33e9d96ae1f8e66752e7753a525f *R/fcn_PCA.R
f690971eb695f214641f89e8fefb784f *R/fcn_QCHeat.R
394622f28e2b9ccb0942f6a5d272bb53 *R/fcn_YAML.R
2a7d1f91a4532987169102087841e58f *R/fcn_computeQC.R
40d860fd7996c5acb99330b3c30e03ae *R/fcn_misc.R
f739def3593f3a7350e76b0b78aafc37 *R/fcn_miscGGplot.R
61213cbee88708e841f78ac1d72ca384 *R/fcn_mqpar.R
ec3ffdcf6956064e32c8e120d54d1300 *R/fcn_plots.R
f864bbcb08d29fad87cb072c81b3b0dc *R/fcn_qualities.R
6ad5350b19b6f10a3837e2073ac98aa1 *R/pkg_internal.R
9731e1ee5133613601144989ce1cc352 *R/qcMetric.R
c8e18845e16da09cad153d2cb6d36be3 *R/qcMetric_EVD.R
adf76a389e3f030bc95e3efef9345931 *R/qcMetric_MSMS.R
3ab28f93dddf1f789d126a39eeb7d4b9 *R/qcMetric_MSMSScans.R
5df8cd9d31857a4888295746ba430677 *R/qcMetric_PAR.R
5c21804aa3f8a7e8dbeb25fc6c48bca9 *R/qcMetric_PG.R
16c4875608aae4bf3f75e6753f944977 *R/qcMetric_SM.R
42d7b2c2f3be762f44ca2d8dc93d0870 *README.md
172626be93ae8d8671b1893e2de03ec5 *build/vignette.rds
a2b2200aa0019cabf809ee7ec7ab6b14 *inst/CITATION
9a98c83903e628cb82a91a6b8c9795a7 *inst/doc/PTXQC-Basic_Guide_for_R_users.R
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bc83bc34b36968ff60618c94851b0be9 *inst/doc/PTXQC-CustomizeReport.Rmd
85583093d37ad7a38949fd2ff1cb5688 *inst/doc/PTXQC-CustomizeReport.html
359a61bf67a0a6beae4d1490be5cd4d9 *inst/doc/PTXQC-DragNDrop.Rmd
c8452498773f5390647317e232a40681 *inst/doc/PTXQC-DragNDrop.html
c63190fcf8dc441d7970375bc75b74c5 *inst/doc/PTXQC-FAQ.Rmd
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257796c62d0d69d56e5766530a5186a7 *inst/doc/PTXQC-Input_And_Output_Data.Rmd
c9c9250693bb1f71b1cf436554000ac7 *inst/doc/PTXQC-Input_And_Output_Data.html
eb546d5104807b90a07040d7ba0a2003 *inst/dragNdrop/QC-dragdrop/_internal/compute_QC_report.R
d41d8cd98f00b204e9800998ecf8427e *inst/dragNdrop/QC-dragdrop/_internal/copy_complete_R_installation_folder_here.txt
2c4bb25711e98da15c538e10cae5d66e *inst/dragNdrop/QC-dragdrop/createQC_dragNdrop.bat
afba0ef9a3a47991f46908de15319a7c *inst/dragNdrop/QC-dragdrop/createQC_dragNdrop_withYAML.bat
25119f0cad893174a3cf2e1e03dda11d *inst/dragNdrop/README.md
b85100014033df703f11fa9ae3efea6a *inst/examples/README.md
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6d77683f6926d068609f65a46b649421 *inst/examples/example_MBRalignment.png
bd78864d5ae688818917f3b43ac3c8b5 *inst/examples/example_heatmap.png
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b152f5645118e536c2f5366dfffa7ff1 *inst/examples/report_v0.80.8__txt_5files_withMatch-100min.pdf
cd69d794eac61008ef73370e0f5462a4 *inst/reportTemplate/PTXQC_report_template.Rmd
7b18f6f42c1a99c8af5878b0ec8f9010 *man/CV.Rd
b75123f02542fac1db1e25083bfad621 *man/LCS.Rd
a16b60435702ca5b9cfeb5e2c9f423bf *man/LCSn.Rd
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cd906349456fe1f028d870221480a079 *man/MQDataReader-cash-readMappingFile.Rd
2e4dfa6e61e9725d5e17e47244139cb9 *man/MQDataReader-cash-substitute.Rd
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dadd3ddb6dcbc31d3a88decfa5eb4283 *man/RSD.Rd
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99b6051d903edd66bd1d14c23c4a2d3f *man/YAMLClass-class.Rd
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bf0d919a298f7bfe0a9129f373f495d1 *man/fixCalibration.Rd
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6ff43dfa259881b6538561f67ab4e4a1 *man/getAbundanceClass.Rd
6686f4eed2d9dd4f92f1581071896cbc *man/getECDF.Rd
82824613c56a4ee7207844f83adbc7a9 *man/getFragmentErrors.Rd
cb3a5420d4e40a902384ebd572882bf5 *man/getMQPARValue.Rd
d54eceb964048ea839913ec98b7a0b42 *man/getMaxima.Rd
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14e08204d4f6487f0352e4c631fddba2 *man/getPCA.Rd
6aed528eaed2c171408fd9afe8e8cfce *man/getPeptideCounts.Rd
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f6aca37327306038ef155ddd408662e7 *man/getReportFilenames.Rd
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0a2fe3e7a4ef4631ebc5c49e5d619579 *man/ggText.Rd
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260412021baad08e898796e7928e369f *man/grepv.Rd
24c3616d499fbd0a6cc3030982b310a1 *man/idTransferCheck.Rd
7eeef18ab59fa67dac411d54c4556d1b *man/inMatchWindow.Rd
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0f700da1f0d05555c11565caaa0caa20 *man/lcsCount.Rd
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4819a20f47aa1557c48453d8482cc6bd *man/mosaicize.Rd
28956e8b7ba92d1b310e3acbbe1433e7 *man/pasten.Rd
340efadebe6a5faf4b3ba3a34bafea6c *man/pastet.Rd
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585068473b7edf0d4efcd1a23879ffc7 *man/plotTableRaw.Rd
93738b5f1b08d16a50df1893d629e85f *man/plot_CalibratedMSErr.Rd
db3974740a705709038eb8858c023b1b *man/plot_Charge.Rd
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733d823611197b6dc48e051564de47f8 *man/plot_ContUser.Rd
9f8098a2dc7932be71679b2f3f2140bf *man/plot_ContUserScore.Rd
53220bf314202204db1084752dca7200 *man/plot_ContsPG.Rd
069e97931084baa1409e76770e3eb369 *man/plot_CountData.Rd
05f1438981b4835fa6a20865a209f22c *man/plot_IDRate.Rd
173b0304a4ee46b322125ae285f51305 *man/plot_IDsOverRT.Rd
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9dde10aa57d859fb0fc591a0719480bc *man/plot_MBRgain.Rd
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9f71ae4a7348df9cd9801636ffe650c6 *man/plot_TopNoverRT.Rd
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d755e43a26c22c6d5eb991286909baad *man/pointsPutX.Rd
8cb974b29f6cb33d2cd0c72fe6bdc041 *man/print.PTXQC_table.Rd
734ba3e991bd7f07548b88598428fcd6 *man/printWithFooter.Rd
1787db9dd66c228bc504bc2b59b10c59 *man/qcMetric-class.Rd
cb2ef1e71a5c39460cdf248d603fcb94 *man/qcMetric_MSMSScans_TopNoverRT-class.Rd
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8075b901820bc0ef47e4d7a192d951ae *man/qualGaussDev.Rd
e5029f4bf6cad0900a916cf38a104d05 *man/qualHighest.Rd
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5150b46743bb47bcf53f9bf66fa6e2ee *man/qualMedianDist.Rd
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c3e87546860fe53f907e99c0d6c31195 *man/wait_for_writable.Rd
bd08a586512ad4ff15e855ffbc4a6a99 *tests/testthat.R
28ef98ed7814193ad56779ca92d39470 *tests/testthat/test_computeQC.R
7290729d89dcc7b0dd5ec7dcb9ea2966 *tests/testthat/test_misc.R
63672258db25ba0a7839abb009e16bbe *tests/testthat/test_qcMetric.R
cab26b02b8e1875135a6fc4c6abe1c3d *tests/testthat/test_qualities.R
8d1625b19bc5b1069ea340d1d1bd120a *vignettes/DragNDrop_Action.png
7f72674e0656ea85d9fb1bfa3c4bbaf3 *vignettes/DragNDrop_BatWindow.png
10ecd679d67a36803b3237dd2236cfe6 *vignettes/PTXQC-Basic_Guide_for_R_users.Rmd
bc83bc34b36968ff60618c94851b0be9 *vignettes/PTXQC-CustomizeReport.Rmd
359a61bf67a0a6beae4d1490be5cd4d9 *vignettes/PTXQC-DragNDrop.Rmd
c63190fcf8dc441d7970375bc75b74c5 *vignettes/PTXQC-FAQ.Rmd
257796c62d0d69d56e5766530a5186a7 *vignettes/PTXQC-Input_And_Output_Data.Rmd
5da39a912c4d6bd739afc3598f89ccd6 *vignettes/readme.txt
