4e44751844c2607f4bc5ba23a846c3b3 *DESCRIPTION
ed2e7e19492cee0434a635a7055469df *NAMESPACE
dfddf0bbc5c2a033ccc93e782c67d1f3 *NEWS.md
4026b4f48ea7373302eafe9758245aa7 *R/FullElevGapFunctions.R
d851eb8378540d15a4a737e79949fa0c *R/GPsInElevGaps.R
fab731e909228ff4ab0e2056048008c9 *R/ProActive-package.R
420fd12f0f6f38fe2294577dc839668b *R/ProActive.R
2f11b3b8593ea3030160d0a27002dcf3 *R/bestMatchListFunctions.R
dd235c8525cf14fbc8f291a87c366647 *R/chunkingFunctions.R
b3a59aba15d3bbffe419008b83562758 *R/collectBestMatchInfo.R
822041d108f06a96b6703e27d1e9d721 *R/noPattern.R
a0122b81aa7e05d256d27b5b79a230a3 *R/partialElevGapFunctions.R
5b00a01c9c98234475c951266b2c0fd4 *R/patternBuilder.R
479f24153a54333122bf24fc75027ed9 *R/patternMatcher.R
2079ba1353e55aae6168250b3bdca619 *R/plotProActiveResults.R
f7add4db1cb2daf0f48a45388a566280 *R/reformatInputFunctions.R
d34bd4e5f4c8810cc27f5408cd8bbf12 *R/sampleGenomePileup.R
4774abad93c1a089fedfd39fc362a347 *R/sampleGenomegffTSV.R
fee3e7ac0fa7f4688b873d3b9e6038fd *R/sampleMetagenomePileup.R
7ba5b007c8e09391592c22cd6e5585cb *R/sampleMetagenomeResults.R
90a0b54b18aed744e8c4e6689a596659 *R/sampleMetagenomegffTSV.R
67fc71fb9107daa8cdd82e4acfee1ee8 *R/sysdata.rda
280a8b63358b40cde2b59d757c9913d1 *README.md
a2b3e5ba3c81dfeb400c191fa63ae883 *build/vignette.rds
42145a4f192f5ac684b0380c27e2c328 *data/sampleGenomePileup.rda
48730690f454ee892c2b6fb98e2debe0 *data/sampleGenomegffTSV.rda
76f36e532111fbebd614b91d94c82391 *data/sampleMetagenomePileup.rda
e764003f996ca42958ee8c8c8256bd27 *data/sampleMetagenomeResults.rda
c6f4744c67df7c63ba8e798c73814358 *data/sampleMetagenomegffTSV.rda
ddcc81054a62953a8ce240ff6b30a2af *inst/doc/ProActiveVignette.R
5d52d143bba67259abb70d13d198261b *inst/doc/ProActiveVignette.Rmd
f5f2c341baaed91636254c93a722c734 *inst/doc/ProActiveVignette.html
57793a38e69343488de0760449a2ae29 *inst/figures/ProActiveLogo.png
8f6e47d4c570eea747451c01d6236c74 *inst/script/GenerateSampleGenomePileup_gffTSV.txt
6f754bc72bfe531c44107e66aafef923 *inst/script/GenerateSampleMetagenomePileup_gffTSV.txt
b6f5b9836e6410d1d65dcb6e7ef942df *man/GPsInElevGaps.Rd
9f62e3e8c73f609128e9ced054e5f571 *man/ProActive-package.Rd
bc615bdf800ffb8d836245d4790faf44 *man/ProActive.Rd
7785572ae564015dbf2ee6179f446ac8 *man/changewindowSize.Rd
2e422099287ac5d24c80511e28c202e2 *man/classifSumm.Rd
5d1d88561a9a6e30f6895334983d752a *man/collectBestMatchInfo.Rd
b56b37cc84fc3942ac72fc3fd574bd0d *man/contigChunks.Rd
8a5cd9c2299c975db26fe647acae7d45 *man/elevOrGapClassif.Rd
e133c68839de4733977d63c7e863ced0 *man/figures/logo.png
acba1811f4ef69a8405e5ea13b273df1 *man/fullElevGap.Rd
586c2ef8d5609ef8f250c7832140a0cd *man/fullElevGapShrink.Rd
53d6a110bdee23a7b65aef6741a5e3b1 *man/genomeChunks.Rd
a7b5cf57910097134ecccf02f1665545 *man/linkChunks.Rd
ba54ce19c57c338d78b40ceee78f549c *man/noPattern.Rd
ea7739f595fff31b679e3191c282cd49 *man/partialElevGap.Rd
e20487daa67ea0ec18b254a2c63b3516 *man/partialElevGapShrink.Rd
8c154c8bd6fd6956de1df5aaf8cd9ce4 *man/patternBuilder.Rd
a5d75aa415693407b12c59ab9d271065 *man/patternMatcher.Rd
09bcaf4c7d526b5bce5cfb6637ad8e7a *man/patternTranslator.Rd
0de03eb2c6870ee4722f950336046013 *man/pileupFormatter.Rd
555754aa24f25c24a27a90ae212bd8e5 *man/plotProActiveResults.Rd
5085a105cc389059e3e5fa4e5d04679a *man/removeNoPatterns.Rd
563b4f0f6ed556c5f61a925f3abc71bb *man/sampleGenomePileup.Rd
aaed864bcdef369d81ff0cc01e1b7b20 *man/sampleGenomegffTSV.Rd
972874bb91a2f98ca2033b2cee50e60d *man/sampleMetagenomePileup.Rd
c57356cd29ce815e7343aff564912d53 *man/sampleMetagenomeResults.Rd
f8f87818e0315ae05fb1407e14e5307d *man/sampleMetagenomegffTSV.Rd
a34404b337abfadfc18d42e61f8bd8ca *tests/testthat.R
fadff41406a90c3b574f816d13217f14 *tests/testthat/Rplots.pdf
6764aaf242574854b455dbc75b336940 *tests/testthat/test-testProActive.R
5d52d143bba67259abb70d13d198261b *vignettes/ProActiveVignette.Rmd
