bc971dd9ea037ebc9b680a075684eb4c *DESCRIPTION
7bf1ccc26e5826ec963a19aff15d41f7 *LICENSE
ebc59db75d1268ea34dcd98bb79e7b4d *NAMESPACE
cea5feaba3b0dc5c5c10c1a0492229f6 *R/EMM_functions_cpp.R
fdd6c8337d500a5bae4c2f8d31c7e3d8 *R/RAINBOWR.R
a88549acfc1c73897f62b1a81efbd12d *R/RGWAS.epistasis.R
fdfbb6466a9b05baf65dcf71c2cfe6b6 *R/RGWAS.menu.R
5465625b51a85976309828121e8bd524 *R/RGWAS.multisnp.R
96e30f663c4161a307bf2afb4c612dfd *R/RGWAS.normal.R
9a82cc69ef6836e2fcfcda02f066527c *R/RGWAS.twostep.R
b68b640d636c83672b614dbbf8da8533 *R/RGWAS.twostep.epi.R
3fae5741e4163d2d13f86d81133eed70 *R/RcppExports.R
35b871b4a75d438a181cc4c4732d1a2e *R/Rice_Zhao_etal.R
df429b1913154d233f3ccde96623eed3 *R/Rice_geno_map.R
03df50ec745fd846fd1c3436f17e0419 *R/Rice_geno_score.R
33af6bcfd26b3b7e49dc438e5bfacd0c *R/Rice_pheno.R
7acca99cc2290afda93a0763a6da54b3 *R/SS_gwas.R
9b97590b60fd00a964a2be47ef7d8a62 *R/examples/EM3.cpp_example.R
3df82baa6009015ba4dff0b1799d7978 *R/examples/EM3.linker.cpp_example.R
dafe1a0242a0820776889449aa0d4a52 *R/examples/EMM.cpp_example.R
fcba17dcffdb4563990bd43a15bae876 *R/examples/RGWAS.epistasis_example.R
b625f37ac05630ddf3c6f49369b43e8b *R/examples/RGWAS.multisnp_example.R
e6abf93c434503993ebbb6495989f5da *R/examples/RGWAS.normal_example.R
c402b876091746cf8b2c80f260410a8e *R/examples/RGWAS.twostep.epi_example.R
1d340f4dc8c5dfd31ca360af69177ee5 *R/examples/RGWAS.twostep_example.R
51180413bcb2c0abf3ec54a55909a03c *R/functions_for_RGWAS.R
b45abaa301903fc2d5125b79eaedc93b *R/genetrait.R
f47ca622ceb4c5740a7e76a576297f8d *R/other_useful_functions.R
f5526b2a74acb2df007f184f5e1f818f *README.md
5de2d23ce599bd329129c2607a468d30 *build/vignette.rds
31348c29e4ffc7dc523c4248f3df0b72 *data/Rice_Zhao_etal.rda
7c22e8bd5c047dad605d2b0b401627ba *data/datalist
fdc459c142889e78bacaf1d184f49296 *inst/doc/RAINBOWR.R
b3de89ef45591c614d242c93315c3169 *inst/doc/RAINBOWR.Rmd
27f7da8f489d4db37241bd22bcd6cfb7 *inst/doc/RAINBOWR.html
fc43588133c424a67ff4d5ecce2267a6 *man/CalcThreshold.Rd
42c0e77eb6f1dee1a8df7f4e40a40291 *man/EM3.cpp.Rd
4558f8992a23e29fb42e403b4682be7e *man/EM3.linker.cpp.Rd
1446d7e2a70f0273ba9eaaa33f1eaca5 *man/EMM.cpp.Rd
4b9240c128a40e3e91b413ebe5586a14 *man/EMM1.cpp.Rd
f8d07d47c941d80837da1b5e6a7427c3 *man/EMM2.cpp.Rd
056e691764332b2bf797389c65c5823c *man/MAF.cut.Rd
2453fd5ae0bc03ed52eae42e64676c1c *man/RAINBOWR.Rd
90a73716c4a023c971d5543063349095 *man/RGWAS.epistasis.Rd
3f95c1d135bbc3b48bfdc72b5ea1d29b *man/RGWAS.menu.Rd
904c24ccf118e3e29ef98a06d5f19e8d *man/RGWAS.multisnp.Rd
1764fa62312c8b234ef9c0ddc2fd4a56 *man/RGWAS.normal.Rd
4cfd30bccfd7b560f32489d6cf185f80 *man/RGWAS.twostep.Rd
f9924ed55f27c2ffa8d5c8ec03984490 *man/RGWAS.twostep.epi.Rd
cefcc9a897dbf47004fc9bb02d121293 *man/Rice_Zhao_etal.Rd
8a810bccbb93ada158fd2a25a43d9d87 *man/Rice_geno_map.Rd
2a8e1d513272a8978ce725ad1ff33688 *man/Rice_geno_score.Rd
75cd86d6e80142af5b5671d91f93cf19 *man/Rice_pheno.Rd
0b6aa14de807fc69e0331a9e421a88fd *man/SS_gwas.Rd
cdfd3aab86d27e2eebcf02d6f002a24f *man/See.Rd
b82b49da99fb39158681e76c67291ad2 *man/cumsumPos.Rd
00ee68461661141ac35c2337d0f8749a *man/design.Z.Rd
1b5d7658f519b40d0a72e724d94a20a8 *man/genesetmap.Rd
8c261d29f9805ccb50987e808c833443 *man/genetrait.Rd
dee7b90441aa20d5a7c84f0d09a377ad *man/make.full.Rd
64f483b824f531e3fe6161edf6fec3f4 *man/manhattan.Rd
2c7ce42766505ae4b2628001e14043b0 *man/manhattan.plus.Rd
4dbfc0e20a4021f3b2f122d0353f28bb *man/manhattan2.Rd
6f29ead7243e49a6197fb2854ddd9536 *man/manhattan3.Rd
1c070b38e7e250901f79b0a74956146d *man/modify.data.Rd
98440e83f68a599e7a9532ba64047e1c *man/qq.Rd
40101652f26acace746642ff6df0ac31 *man/score.calc.LR.MC.Rd
e4825be95dbcc5a60aa6f8845016e77b *man/score.calc.LR.Rd
32187bfa5bf0e95bbee1960859ec390e *man/score.calc.MC.Rd
7e9f4ba87ad117045e6faf98996f8dc1 *man/score.calc.Rd
3d796914371a4cc65f94ccb96111d730 *man/score.calc.epistasis.LR.Rd
5ce2563b59f21af5d291e9692e243f1b *man/score.calc.epistasis.score.Rd
689a6b441e61123d8d080e394bbcea57 *man/score.calc.score.MC.Rd
e97aba8bac03ffc45edcf2d35544132c *man/score.calc.score.Rd
f31871427ffdd3f28545b5415dc0b707 *man/score.cpp.Rd
b055d72c53346e78fe75a2d7a89bbcb8 *man/score.linker.cpp.Rd
a5804b4132eac7f519a658260d6cfdba *man/spectralG.cpp.Rd
360bba514cc60960abf248914906903e *man/welcome_to_RGWAS.Rd
3456284f1f36599b172887cb57fb363c *src/EMM_functions.cpp
ef137391e636b94d65dfceb855133e39 *src/RcppExports.cpp
b3de89ef45591c614d242c93315c3169 *vignettes/RAINBOWR.Rmd
