f56dc80a1b21dde906058dc7e356f874 *DESCRIPTION
0c8b71899846b1e5382987294d538385 *NAMESPACE
55f81212906d60cb080222ce247838c1 *NEWS
a89e3111069eaca28057fe8b45b415b6 *R/CAST.r
06e0f438e36ec3d80ae1a6a03c5c1e80 *R/GRR_matrix.r
4b6b85116cbaaec27062ec85b6b0b689 *R/NullObject_parameters.r
1e215259e657949704e90561e48d6e56 *R/Pi_matrix.r
afd2f25801a82d4242cfde58b5f09563 *R/SKAT.r
201e59497e0c7762c643243dd1b33b4b *R/SKAT_NullObject.r
5fa458a982afff540d42b6ba49de64bc *R/SKAT_bootstrap.r
b83dc15d3a754c029b92b86b1da6b44e *R/SKAT_continuous.r
3a9c5c2390bc042aea757034924f2633 *R/SKAT_permutations.r
937f1d0b8ea0a7cd9e2458c3c8772d7f *R/SKAT_theoretical.r
f1eb65b01064d0db1260f9089edd373c *R/WSS.r
a8b41d5ae9464bfb1a1e3d5334e2f06d *R/bed_matrix_split_genomic_region.r
03820e3eb898cfc1d28c61a56be87d4b *R/burden.r
429455bce1f7290cbff8c7a6a5ca0496 *R/burden_NullObject.r
7d6abda322efb481dcce270d6e6d8d0a *R/burden_continuous.r
10bfea6b218fa5f2ebbeaffc355c9556 *R/burden_mlogit.r
223cf3dbe12f793678c029af02edcc31 *R/burden_weighted_matrix.r
7d01bb1cd5dd3e69daa585d753eb5dca *R/filter_rare_variants.r
2c5284eef6d5bc5e6f97b711e55b61e3 *R/genotypic.freq.r
b1f1eac2cb22114337e752d896fbb712 *R/get_parameters_pvalue_theoretical.r
66a985a190532d8605cc84ced8edf4f7 *R/get_rbm_thresholds.r
ba34248bc9a2d0e157af35f92de85427 *R/globals.R
a5544fa6c94f8dc03677f5c46fdfdbc0 *R/jaccard.r
18efe1f2141cadef12d8cf8877a06112 *R/matrix_products.r
c6fd697e7c7de0e11ec002b39d3cf22f *R/new_bed_matrix.r
3737f9d3e51775ec30f7c84907335447 *R/or_matrix_fix.r
389fbd89b96745fac87726fb25d3e4f7 *R/or_matrix_fix_same_variant.r
b9361ab4ef642d155b8ad54cb460487b *R/p_valeur_moments_liu.r
17faab8eea71da64c5b89de1145da1bf *R/random_bed_matrix.r
a8a05d4f166b169ab1ecf5bcb2edd0a5 *R/random_bed_matrix_freqs.r
bd6c49aa0e25ca9352b43dd4fad05b8a *R/random_bed_matrix_haplo.r
3bc924efbee26ca7982a4a2162dfbccb *R/set_genomic_region.r
6f0661dbc991062419b64f5429b0b079 *R/sum_fst.r
9a435e993878bbeb474a7de32a4c8749 *R/zzz.r
ad9a33e406b8b18fa75a3b14c713fa24 *TODO
67f778035a0f10a9a6af7cb9d992ab51 *build/vignette.rds
22b409117d530d9e7af3a43aa30b2688 *data/GnomADgenes.RData
17791ae871bc011907cb10f3d9fe51da *data/Kryukov.rda
00dd23ea8b50bf48e83a3dd7fc1beba8 *data/LCT.haplotypes.rda
8621f6ae992dc6b3837c67733e1f6119 *data/LCT.matrix.rda
807a00cfdd86adedc9d1749077d86d9f *data/datalist
1d76ec031d788f09e66df1ddb53585fc *data/genes.b37.RData
3168ae14549677d4c98690a739a4ca80 *data/genes.b38.RData
9a0ec09953f3bc2388c722196b67a496 *inst/doc/Ravages_Simulations_vignette.R
b2b2bfb790fd78d9cbea834e0a008308 *inst/doc/Ravages_Simulations_vignette.Rmd
060ef3352cb6740b4842d889ba255db4 *inst/doc/Ravages_Simulations_vignette.html
2be31aad926e5e283c2864340d63fa50 *inst/doc/Ravages_vignette.R
6cfc27f376a658488a430e4a3ef6bf65 *inst/doc/Ravages_vignette.Rmd
1ec791318962ccdc1352a757bf098842 *inst/doc/Ravages_vignette.html
17bf3c7c65cb6d92e1cfa027a77d60cb *man/CAST.Rd
55f076388578f0be140b2640c7691cea *man/GRR.matrix.Rd
9aa774e3bddca548c4f8607f0aa687e7 *man/GnomADgenes.Rd
d45e689ad53dca08744cb73e9eaefbcc *man/Jaccard.Rd
d660c513320d9562d821256a0ae357ee *man/Kryukov.Rd
6d418e81535a3c7b6f9c57c51fba8c9c *man/LCT.haplotypes.Rd
da0c83dd3c935c389cd9c8e0c4fdc83c *man/LCT.matrix.Rd
28c8c6d84351ac653c79b6908d385852 *man/NullObject.parameters.Rd
90fad90f7bb9c906b2b2b7faf4c59431 *man/SKAT.Rd
6f97d8284d83d518e4f78244bee37748 *man/SKAT.bootstrap.Rd
d5cdce206723063576371e34a1fdad74 *man/SKAT.continuous.Rd
3884786e9586b9f0fbe76b3cd2e6b462 *man/SKAT.permutations.Rd
4548234875e3a74d4507f012d1535dae *man/SKAT.theoretical.Rd
2d9f2484af41ba8f5ff898f366ac9b85 *man/WSS.Rd
c6f2d90b42ebc9ccb01bcb723e279f1b *man/bed.matrix.split.genomic.region.Rd
6a26a8273fda1dfd35a999db49226be4 *man/burden.Rd
7caf8a3033b3dc668ebdd661b2f7f7c2 *man/burden.continuous.Rd
0583bb10ed6909a4939385b495168d1e *man/burden.mlogit.Rd
73a1d1050d1605fe6ed21f4ce3985bc7 *man/burden.weighted.matrix.Rd
203497075203ca5b3d2e2446dd6a8c99 *man/filter.rare.variants.Rd
426318870e095196c983d87ba758f7c1 *man/genes.positions.Rd
6acfb573f29a76ba707372bbe46e80ce *man/genotypic.freq.Rd
8159d9e05b560a6b3b482d9e3c73f762 *man/random.bed.matrix.Rd
277d6a815d29b6329b14fa9f06a3c1b1 *man/rbm.haplos.freqs.Rd
fa3b06ec92a3cf15a3a66edd32a2b80e *man/rbm.haplos.thresholds.Rd
1037716c68db6ada978d78afe570dfad *man/set.genomic.region.Rd
81beb60f26a702e7dd487477a1b6328a *src/Makevars
e3d3cb360fbfdb3c6974e14eb5f09870 *src/Makevars.win
d0be640e2cc2d91a8f130d005c0b23d6 *src/allelecounter.cpp
9a37fad3bbd14ccbad5b0e203f05c8a6 *src/allelecounter.h
455fe05b373763e3bc7b7975c048e4d1 *src/allelecounter2.cpp
52666a8fed00172c981096427a957ae5 *src/allelecounter2.h
fcfa9a9d4f6fb4b60468dbdf61dffe5b *src/alleles_by_group.cpp
de71d24837c1840b71331e674000d5cf *src/block_diag.cpp
fb5da6185035214101f01503dbea151f *src/burden.cpp
9416560ce670cf0d82c488b2c9446166 *src/colsums.cpp
3ea5958e1b38b57c60eaf986a3cad881 *src/count_alternative_alleles.cpp
0002b170814ccd09c59136e30b401863 *src/itere_combinaisons.cpp
7ba1b078f78aba636e943712633e366d *src/itere_combinaisons.h
2e3d36ba6f57fee8197dfb7fc3386e16 *src/jaccard.cpp
9d3211bf481847409a9cebe26ecbd773 *src/label_genes.cpp
470d5f7b18fdc415a300ab874d8096da *src/label_multiple_genes.cpp
33221db4906b3e1e0adbebfac189dc09 *src/m4_stats.cpp
e3ab65750807a3131faee07560e7b47e *src/matrix4.cpp
f7a6c5393fe0d739a72e2932ae5f99ec *src/moments.cpp
d6cb5b42930089eade1d07e54d075155 *src/polytomic_haplotype_proba.h
a6fb36654d733f0eef09183395eb45c6 *src/random_bed_matrix.cpp
38b3fb2b0f74f9161e02838ae0dddb5d *src/ravages_init.c
1daf5700d4d5817329b95d2265ac6d62 *src/rbm_haplos_freqs.cpp
481e7db3961eced6e49127ecc9b2278d *src/rbm_haplos_thresholds.cpp
ed463dbbdd3d0c2adaa4157ed9df906d *src/rbm_haplos_thresholds_filling.cpp
b2b64bf34ab3659fcdc4ce00a733547a *src/skat.cpp
668fe4486d3865ddc0d6927628fb159e *src/skatBootstrap.cpp
3eae8abd1577c79e5f5df735079704a9 *src/statistics_class.h
68b1536cb2a74246126c0d72e8821f40 *src/sum_by_group.cpp
43d556ab4ee8512d5ab5c86e7836174a *src/sum_fst.cpp
9a0cbf946660307deab8a80136395117 *src/sum_fst1.cpp
2c15d34eb82757bae1ae9779814e5739 *src/weighted_left_product.cpp
fbf951fccc7cfceaba64fd0219603e3a *src/weighted_left_product.h
b2b2bfb790fd78d9cbea834e0a008308 *vignettes/Ravages_Simulations_vignette.Rmd
6cfc27f376a658488a430e4a3ef6bf65 *vignettes/Ravages_vignette.Rmd
