8cf9a5bff0b6a0df42e1bcdfcd9c9f13 *DESCRIPTION
01b0ed55118925b6ed4f72a7281256c3 *NAMESPACE
76e6e3b7331ac0c673977e2b91b7b025 *R/haplo_initialization.r
c8172dceca67a94038961b1f0ee0408c *R/post_sampletrees.r
160ebe163b53949c814218e09b3311c9 *R/pre_sampletrees.r
935c4006745f3fb538d2dded118be841 *inst/Examples/EM-hapfreqs.out
6b4e58312efd5212bf37210b1391f615 *inst/Examples/EM-initial.out
c4f599f81e102f56df1a945fd96b56df *inst/Examples/EM-known.out
29de3b101f65abfd6e026547a28ec812 *inst/Examples/example_g_pars
e1694bf88fc52630af4e9276b7ece51a *inst/Examples/example_h_2_pars
81d1f97cd27cf55fcc891f4310ae0912 *inst/Examples/example_h_pars
fea4ed6b08ae92fef0c40545c8b86120 *inst/Examples/geno_Theta8_Rho8.txt
79e475eab4b9d37db36bb37a1e384394 *inst/Examples/locations_Theta8_Rho8.txt
e0cfc2c401a8cc126fc1178458a8c371 *inst/Examples/sequences_Theta8_Rho8.txt
d78f9be609a324a964930ef5591d5167 *inst/Examples/weights-g.txt
403ff4ad66ff42b5649564d27b8675fe *inst/Examples/weights-h.txt
623e9d95046cae7b6d90f7f81576eeff *inst/Output/Example-g_accept.out
e07872401e874eb6090ebf411f61cf6a *inst/Output/Example-g_firsttree.out
648bc8896d6ef0c3965dbffb576494a3 *inst/Output/Example-g_haplolist.out
9dc0ff617da5210a3b3c8d52be56e9ff *inst/Output/Example-g_lasttree.out
dde38a2078a02813cbae71cc74c6f22c *inst/Output/Example-g_postprob.out
31f39026934f78e70f435f50dc668b2e *inst/Output/Example-g_samples.out
27fae310459c78b639fee79e93e75595 *inst/Output/Example-g_sequences.out
0758ee825f22b3d6460c65daaf32fa23 *inst/Output/Example-g_trees.out
ec814310064a7d3bd453897f8357ce65 *inst/Output/Example-h-2_accept.out
0e9519d6e666343c3ef6ac0c89a8cf7a *inst/Output/Example-h-2_firsttree.out
eef343608ee8a351e29dff966f39baa8 *inst/Output/Example-h-2_lasttree.out
cb8dcdaf895bfd88413b4267bbf4dc70 *inst/Output/Example-h-2_postprob.out
705e9acf25ee4048a742724a3abdbd41 *inst/Output/Example-h-2_samples.out
9db69b97f67533dc5118919edcc881d3 *inst/Output/Example-h-2_trees.out
b59de21b2e749d2e5a28f74a8df10389 *inst/Output/Example-h_accept.out
faab9b485fbe442714a9580a2cbd3c7c *inst/Output/Example-h_firsttree.out
0e9519d6e666343c3ef6ac0c89a8cf7a *inst/Output/Example-h_lasttree.out
c5b1ad9b8043cda8d2114010fc7e7cc4 *inst/Output/Example-h_postprob.out
dd920d26fb21fe7bee55266c2f722801 *inst/Output/Example-h_samples.out
19b66eb483be091b3d486ad459770acb *inst/Output/Example-h_trees.out
1666118217f21525a96efa08cc7e4ce5 *man/Rsampletrees-package.Rd
a18ae8fa968b81685035870a93214736 *man/addTreeStats.Rd
2d9853553275d1b86036fdf9c2c8ab07 *man/addTrees.Rd
8212292cabf95c540bb4f9aaedaf9c74 *man/changeArgs.treeoutput.Rd
02d29f13499b368bc88fa15b06a70fd8 *man/checkArgs.Rd
e2bcb35768134494d01aeafd04423f05 *man/estimateHap.Rd
89a000f3dd0f36fbc130990cd4a15fad *man/merge.treeoutput.Rd
4bdb47e995eea9d80413bb486e44aa06 *man/newArgs.Rd
c6930d43e4f2486f1aed80e92bdd18d2 *man/plot.treeoutput.Rd
91b465339015239b1ce5e013ff824eee *man/print.pars.Rd
2ad00df4bdac91477970f872839b0214 *man/print.treeoutput.Rd
33919e0409b604817185b87ff5e28383 *man/readArgs.Rd
20e3be9302b6439222d2fd67f35f9895 *man/readOutput.Rd
b1f359f4b7271ffb7f63d95b024ca99e *man/readTrees.Rd
93518956d56e5c980db6cb937d402cc0 *man/restartRun.Rd
253e7ee8af3bb98cbba7ec6fcb55274f *man/setWeights.Rd
ed60085ede4033cab2832f9a94e80b60 *man/summary.treeoutput.Rd
19c101e2a2d2049d50f737fa971cd834 *man/treeapply.Rd
dee28e6537b2fdf1db25df6147d81f94 *man/writeArgs.Rd
482ebf2215ae036c9c01bd1015e17838 *man/writeTreeoutput.Rd
