cc137f444e19950e8b99729f33b1ef40 *DESCRIPTION
1091c107214871402517574edef18929 *NAMESPACE
9fceb7bf8edb91cef97ad93d7eb6a06b *NEWS.md
92274cad70436c7deff93b549badc97a *R/Ancillary_Indicators.R
91f55456caacfe089c604c797516e0da *R/HCRs.R
d18fcc0215ed86310309fc5cc3e807cd *R/Misc_fun.R
eb6f3985f7a85308fd6d28a4da53f2ee *R/RCM2MOM.R
bb3612883887e1491370492b495cf197 *R/RCM_assess.R
2c557a276a0555c8e66a0db65c46a326 *R/RCM_data.R
711c043d5d63553435469ae6a5f1c4f7 *R/RCM_est.R
14814e921488513d1591f031dc35909d *R/RCM_int.R
9e4ab23ac771298e9c5c043545f4ed5b *R/RCM_rmd.R
e880e573fa3d7e0ae32913641afba7a0 *R/SAMtool-package.R
962e6293a47a91ce58122b2f2f916a3b *R/assess_DD.R
16fbfca720c36a26e6d09c675f254450 *R/assess_SCA.R
b53e2479e15b54b32d65b71fcef15e6f *R/assess_SCA_CAL.R
39d6a15c6c10a856add6772311ddf185 *R/assess_SCA_DDM.R
656ef52015fd4afa4cd980389057765e *R/assess_SCA_RWM.R
89dd6d2d536cfce8b0faaa0cb993b781 *R/assess_SP.R
8fae18a9ef786efe73aa3fc1e2980d27 *R/assess_SSS.R
4a25a75d6f45c6395d5300d8e0046c7a *R/assess_VPA.R
0d46cb9bfb8f8ea7d9830625e2a7b731 *R/assess_cDD.R
754729d2e5e108645a6b013ccae2cd20 *R/assess_shortcut.R
5530d1ee445e8806a8dfab3ace6edff2 *R/define_S4_class_RCModel.R
7357e8d3d693df4fcb6c7519e91a9342 *R/define_S4_class_assess_RCMdata.R
a77bd32005023bae50fce07a7eb4983d *R/define_S4_class_profile.R
db30eef74ba57cafb68973b06823ad60 *R/define_S4_class_project.R
d468a48ecad1374f26a02b68c06bfafe *R/define_S4_class_retro.R
b95852bf6150240dd1045da8b9167271 *R/define_S4_generic_RCM.R
2615ed505d600e7476fc6195d51c424c *R/define_S4_generic_posterior.R
6790782bab8be96ff5b43efebec8571f *R/diagnostic.R
84748820ac8a5c2323222a97fa32155e *R/document_data.R
7aeaa863c381b30ddcaacc2a7510e2e3 *R/interim_MP.R
6194fb98ac1cca4d361eb7816da39bad *R/report_DD_TMB.R
7f300903080d40d482fc4ed70f01dd4d *R/report_SCA.R
d162df637f1f1e77f3a37b867055ac4d *R/report_SP.R
68b1ee1840c4040c6a2838630a7203b3 *R/report_SSS.R
6144c8b725fff6c3e9b5c7c0f07f7a1f *R/report_VPA.R
3818aa5fb8965d4f6436ee682a940efe *R/report_auxiliary.R
676a78457aa98bbf1a8734fc5d223335 *R/report_cDD.R
c90f31c5dc364166eb496c967fab9eef *R/report_spict.R
60eff7439a618fab0b438487f55024e6 *R/retrospective_AM.R
d7cc23789df377b754f2f03171f533e9 *R/rmd_report.R
d296fc31a698cc7801e900dbb284eca4 *R/z_MPs.R
4962d1a19cba08d36d8e315343f1e4de *R/zzz.R
6cf019417ff5cd6e5fb7a45a474abdee *README.md
255f65ef7647a02121c89eb48207ee7d *build/partial.rdb
eb7c1691b6e8c9e1a6c270ec565a956d *data/pcod.rda
bb1b13a174ffd95d912d08fe58df4f78 *data/swordfish.rda
98f4823b0ca44ff9a9ccc2f5f1ee0b05 *inst/include/DD.hpp
513397b8bb5f9a29bac2225ef0fdd9cb *inst/include/RCM.hpp
25599d119964611802a2e8dbd00f7ed0 *inst/include/SCA.hpp
441c38e7b3793f2aca467ffd7949de50 *inst/include/SP.hpp
05180817df5e836e4fb07608b829b741 *inst/include/VPA.hpp
d61e244fd8446cfb5b5724198ecee0da *inst/include/cDD.hpp
903f9fc55fcb021b4ac7943be94eca7a *inst/include/functions.hpp
9086698084e8fc14a92c9554e9b37381 *inst/include/ns/ns_DD.hpp
1fd10fa452af758cd0b4146576ebcc46 *inst/include/ns/ns_RCM.hpp
0a46cb9d039506511554768779ae4e02 *inst/include/ns/ns_SCA.hpp
c712874fb94e45cec0864453a7e11be9 *inst/include/ns/ns_SP.hpp
bbbfa157d0d4c1964cf44067b26c362c *inst/include/ns/ns_VPA.hpp
1841143507ebe3add4f94f4209a40ffb *inst/include/ns/ns_cDD.hpp
8e3f5c336e12afb86ca43e1e54b6591c *man/Assessment-class.Rd
536f025b4e71997c52de5c0a8c14dd5d *man/DD_TMB.Rd
1bf3e2f20e43a81ebac9b392c8af0475 *man/HCR_FB.Rd
6be55d26f2a5a549e07305a4bebc05ee *man/HCR_MSY.Rd
ac6423d487d4b6caaced76dec1a5d718 *man/HCR_escapement.Rd
2f9c18e80a7d7d43a20f731f9fca44af *man/HCR_fixedF.Rd
ead53278ad9c9985175dd1a00a04e897 *man/HCR_ramp.Rd
6c4da6d53b0aac34060caaf729b7b2dc *man/HCR_segment.Rd
deb4bfa7f63131574a169915c67beecf *man/HCRlin.Rd
ab9076d6c1cb30e29da33f4b13796157 *man/Model-based-MP.Rd
838fd32db771ea5fbcfef6f2720acf28 *man/PRBcalc.Rd
2ff10c056dc956d9757cf4584b334bb0 *man/Probs.Rd
158cde168aca5afefa4d8183d73a8745 *man/RCM.Rd
c22b2c2534e416c09128da8bddd0d328 *man/RCM2MOM.Rd
f8ce5efb483864182b60949219bed22c *man/RCM_assess.Rd
26be8626385a13560e6df57bd42ae331 *man/RCMdata-class.Rd
61fe79a09bade9d76ba208477909ace8 *man/RCModel-class.Rd
004a46366426e1e0b82859b518fef249 *man/SAMtool-package.Rd
6e2a36e11e546d1e4b8715a0261fcb5e *man/SCA.Rd
d0ca2eaf8a508a6b4bf27aa26504e2f4 *man/SCA_CAL.Rd
41beaaef0320e6ac79e20bd3f7d2e76a *man/SCA_DDM.Rd
066772b872b43735b33e793af75d1209 *man/SCA_RWM.Rd
ba3bb1eddc12d7661b9cb8d2f0836630 *man/SP.Rd
69cecb2b65f7d7d27a9fe9812dcd468c *man/SP_production.Rd
098f3e14ff31d9e0d733c91d487d7fb9 *man/SSS.Rd
59966358fef98f1eac963f3750616761 *man/Shortcut.Rd
469ef44d7cb296a4c6519fab2ed90817 *man/TAC_MSY.Rd
2606215e87128f693f1dd9e8b2693db9 *man/VPA.Rd
1bd5467861ed445d3d9268f0b7a3ab5c *man/cDD.Rd
a1a2969b099e8cabe5ad364f0af5c429 *man/compare_models.Rd
31da4c6ef0812b98426724c28a2fa131 *man/diagnostic.Rd
f97caf6f39b959e728f030dbd0414338 *man/figures/logo.png
c37f14ef7c528b468efae8201c1bf2b4 *man/getinds.Rd
3e8e0200124659ebdf737b81d1a65069 *man/mahplot.Rd
06ee23d8d6361d092119e04354582eca *man/make_MP.Rd
576911732ce0326f36d71dca665e6bdc *man/pcod.Rd
b8966cba16a4ae2324b6871df9b4f9f2 *man/plot.Assessment.Rd
8354fb1143aa13f9e940adbc77fb9976 *man/plot.RCModel.Rd
4684b365a5407f166342634486652e02 *man/plot.prof.Rd
973ccabc6d1633e96f31da5658c9f950 *man/plot.retro.Rd
2232fde44e077368299081084ec253a3 *man/plot_SR.Rd
b5530965d77001625145eb5889de36fc *man/plot_betavar.Rd
a71572feab1bab60f650437dee046603 *man/plot_composition.Rd
4bc1401c7046e7f1a3769826e76916b8 *man/plot_crosscorr.Rd
352fee8cf40f0207214c2e5037c7c967 *man/plot_lognormalvar.Rd
5437df95df9b46d10a5f461aeca89f36 *man/plot_residuals.Rd
06c1da01d4c059373ecff529f3b71657 *man/plot_steepness.Rd
7c351be5a6c862b2ce42e6dc3c9a0175 *man/plot_timeseries.Rd
367fba5b437c1a8b1ce774e622da9d5f *man/posterior.Rd
a1685354377121287961fa58736e4e3d *man/prelim_AM.Rd
5a84f25a38245c0996e82219d4a831b8 *man/prof-class.Rd
72819ae7ab1ede9b026d3f820b7a99e4 *man/profile.Rd
97b4670be2d84e773f3efaffd147c40a *man/project-class.Rd
1b73dc8f7948dde11ad69cf800bd7d7f *man/projection.Rd
a641755f1c1ea1a121de7a885aa1247d *man/retro-class.Rd
fd3443508395579f971081da05d10044 *man/retrospective.Rd
20fab379b51d076d535807b32da8b1df *man/retrospective_AM.Rd
aad4fd93bebffd0a4715231390e5d58d *man/summary.Assessment.Rd
fc7af38ab1bf8aa48a9cdb8b65533609 *man/swordfish.Rd
856cb7fd04c2c6731ce85c4c979cc5be *man/userguide.Rd
6aa95f33f2477fc38dc0bc28dda50e32 *src/SAMtool.cpp
