8b5c8c66a6f9619b1ce15d94470f8e00 *DESCRIPTION
6f4c414e374d277a55d9d3d3108eab70 *NAMESPACE
61f95a2b19f1a10e1c85321744e78fe1 *NEWS
6b87f650f9a85350c2a7e686ac3548af *R/main.r
7b13a50d91c1c5a57b62491e749441c6 *data/hapmap_geno.RData
d3d0f8bd4037a0827d4cb1e050d03196 *inst/CITATION
8a177cc8593e3e4dc6ea53c8428b071b *inst/doc/SNPRelateTutorial.Rnw
88cc7d98f9a18ae6958d3e1f69085295 *inst/doc/SNPRelateTutorial.pdf
2274466dd1594de8d691f6c431ca27fb *inst/extdata/hapmap_geno.gds
3dfba33557d832612dcc0e64d942e089 *inst/extdata/plinkhapmap.bed
eb7e83a868607c6a2a7b9d23cc3ea946 *inst/extdata/plinkhapmap.bim
801414c43179a676234d6f4e8a7ba361 *inst/extdata/plinkhapmap.fam
00213792673cddfaf7ac9606dc226f14 *inst/extdata/sequence.vcf
98cd3bce4cf20fef2a59fd880233e94e *inst/unitTests/runTests.R
5939372190a8acf5e377edca729b6fc4 *inst/unitTests/runit.IBS.r
f0e4d0f322ce8686aa92e33b4c9fad5d *inst/unitTests/runit.PCA.r
253f15788e6817ebc4fcc11638cc2fad *inst/unitTests/runit.PLINK.r
361bb9248ae790dc7c25b3e50678988f *inst/unitTests/valid/Validate.IBS.RData
e9d6c067c0d637933aa7f3ab3bd31fd7 *inst/unitTests/valid/Validate.MoM.RData
3f7d403802db8ccabc2c486a65582862 *inst/unitTests/valid/Validate.PCA.RData
03197de399f673a4e3c22c281e146794 *man/SNPRelate-package.Rd
6bd7f9d1c82ce845a76ff905da592581 *man/hapmap_geno.Rd
cddcd6acdae58de945630f0a7d7f7807 *man/snpgdsBED2GDS.Rd
a86dcb5c0421c79ef94362836a45d16b *man/snpgdsCombineGeno.Rd
a2b8f0dfad76e3efb7cc0574a84c853c *man/snpgdsCreateGeno.Rd
7a5e8eea368d9fb967d413d6a595efa6 *man/snpgdsCreateGenoSet.Rd
aa4475909b0a715e1f71bfeb709c44ae *man/snpgdsCutTree.Rd
36b2530eeee98e48db52de8985c6bc73 *man/snpgdsDiss.Rd
378cdf60a3eb6509b74038b8c78ba89b *man/snpgdsDrawTree.Rd
78e522c39b5f5821437f3f497722107b *man/snpgdsErrMsg.Rd
8fa681060959c5c86606ddf0ac3d3a00 *man/snpgdsExampleFileName.Rd
4d6ed2b00e730b9a26320a024e95c30f *man/snpgdsGDS2BED.Rd
d3d01a6527d536f363c9edb6f3dabfee *man/snpgdsGDS2Eigen.Rd
cca20e2280c0cca076ee06178d669ee0 *man/snpgdsGDS2PED.Rd
cff762e955535291e616971eff01f859 *man/snpgdsGetGeno.Rd
33e602ad15dfc6d23f2441d259450d4f *man/snpgdsHCluster.Rd
2ad7c3dbb440493f18a913245641bfd5 *man/snpgdsIBDMLE.Rd
fb12c6068aa51231650b3a0069c1ad27 *man/snpgdsIBDMLELogLik.Rd
76b6239aa8baf08a815a43a4d7e12561 *man/snpgdsIBDMoM.Rd
49b98eece002a79dca62ddf4e4a9badf *man/snpgdsIBDSelection.Rd
be960502a2312a347dda8c26bb46ad43 *man/snpgdsIBS.Rd
3eb2e8dbdf85478cbf932d2ebf59a69f *man/snpgdsIBSNum.Rd
245740c1694b84f0326b3e6e16d9c40f *man/snpgdsIndInb.Rd
455e0aa34b98539f38265980979ecbb3 *man/snpgdsIndInbCoef.Rd
a0e19d026cba83d24ea91335c870438f *man/snpgdsLDMat.Rd
0f22c235f71222cf3619f3b06ba39f7b *man/snpgdsLDpair.Rd
743f404893f05e71ebb5472ae9e00c22 *man/snpgdsLDpruning.Rd
b241088542ea10bd40d6510381a0b4fb *man/snpgdsOption.Rd
d1a95749257175f900f2173db006ec8f *man/snpgdsPCA.Rd
59e63317eb8f8a5bf2cfd0ed0b2b49bb *man/snpgdsPCACorr.Rd
ff838749c0843907c213c98c9c501ca7 *man/snpgdsPCASNPLoading.Rd
458ef10fb2f8ccb326e0a71a2eccdb6e *man/snpgdsPCASampLoading.Rd
b91129ce860bd7e97cd0ece804636cd0 *man/snpgdsPairIBD.Rd
5098871304f465615db6aa6d351d8013 *man/snpgdsPairIBDMLELogLik.Rd
1788fc450675fd7569633d22097cd1f8 *man/snpgdsSNPList.Rd
23c3c499840189a458819dbbf744d13d *man/snpgdsSNPListClass.Rd
7c959ebb9c3367089907df2d0f49c80a *man/snpgdsSNPListIntersect.Rd
3836a83393c333baac0d252720053a7f *man/snpgdsSNPListStrand.Rd
508dae3b128ddb469c85ec90377326ec *man/snpgdsSNPRateFreq.Rd
2c089c36e3645d509f790c39bdd0fb26 *man/snpgdsSampMissrate.Rd
6276080aa9146a99060ae3a6e650fbf7 *man/snpgdsSelectSNP.Rd
89ec8f6946aefed443b45a8b71226354 *man/snpgdsSummary.Rd
e91d2697092da8f500b5641e8d9fb31b *man/snpgdsVCF2GDS.Rd
8de7b624e94d7b413ddc809e0ac391de *src/CoreDEF.h
1e681d9b38c2eab8b501cb9a93b56813 *src/CoreGDSLink.cpp
ed3879fa9fc433e4d6205a70d568b09d *src/CoreGDSLink.h
869c3c72b7e4e3f97c32167521a4299b *src/Makevars
bdfd9797524ab6027a1bcf06d34a9057 *src/Makevars.win
648696c8437d13c0de6d4898cd27ed93 *src/dGWASMath.h
bc2f46a08e6c6c002b79853d7b69214c *src/dGenGWAS.cpp
0fbf8bae817cabf1a70b743451174cec *src/dGenGWAS.h
e573616b633121052db281cd82e7e408 *src/dType.h
00555b75bf79e00e5200e6747abbb372 *src/dVect.cpp
ac31f81e67031d59f3108509e4057c18 *src/dVect.h
a6d7c8578ee320646f0157fdd4b27a92 *src/genIBD.cpp
05ec94fa82bedfec7d7857fe9ad3a452 *src/genIBS.cpp
6b421d22b611e35f9bd77e5a73ff0f09 *src/genLD.cpp
9b2961842712a55635f489534684b62c *src/genPCA.cpp
ccc799533ecdd9b1af5cb635c00e12cc *src/main.cpp
b2a430f628ba19f9534311945243dbde *tests/runTests.R
2e46d7b0cdea051f4e0c287a541b01cc *vignettes/SNPRelate-Flowchart.png
d09d6bb49f8d52c65e39ba5d4eb6a1dc *vignettes/SNPRelateTutorial-IBDMLE.png
8a177cc8593e3e4dc6ea53c8428b071b *vignettes/SNPRelateTutorial.Rnw
