6295a95c58357aae1a17de79c9138e81 *DESCRIPTION
86d1ff8b7633c437f24bd5810e680549 *NAMESPACE
038c7a732146c26baaa193596e1d462a *NEWS
e2a7974b28b45b8d4aaa2fc7f8a99d29 *R/IBD.r
e0e43c7e12fc986793e4a8d5c4a407a5 *R/IBS.r
3a60690d16fd207a4c814b9b725edbe5 *R/LD.r
f2e8d3be8899229f29c37c26a393c18b *R/PCA.r
7b0c3a626a7af896ac203b7eb9814aa1 *R/SNPRelate_Main.r
7b13a50d91c1c5a57b62491e749441c6 *data/hapmap_geno.RData
195259fc6e2cec74aa0f05627acec6b2 *inst/CITATION
783bb74b054f5720f75b2284c8d0ce47 *inst/doc/SNPRelateTutorial.R
4657876555eda08cf430b6fb92e1025a *inst/doc/SNPRelateTutorial.Rnw
86ef7c7c2b51997958c3922399f69d46 *inst/doc/SNPRelateTutorial.pdf
64cf754f97586b65ef62f7d8cb21633f *inst/extdata/hapmap_geno.gds
3dfba33557d832612dcc0e64d942e089 *inst/extdata/plinkhapmap.bed
eb7e83a868607c6a2a7b9d23cc3ea946 *inst/extdata/plinkhapmap.bim
801414c43179a676234d6f4e8a7ba361 *inst/extdata/plinkhapmap.fam
00213792673cddfaf7ac9606dc226f14 *inst/extdata/sequence.vcf
98cd3bce4cf20fef2a59fd880233e94e *inst/unitTests/runTests.R
5939372190a8acf5e377edca729b6fc4 *inst/unitTests/runit.IBS.r
f0e4d0f322ce8686aa92e33b4c9fad5d *inst/unitTests/runit.PCA.r
253f15788e6817ebc4fcc11638cc2fad *inst/unitTests/runit.PLINK.r
361bb9248ae790dc7c25b3e50678988f *inst/unitTests/valid/Validate.IBS.RData
e9d6c067c0d637933aa7f3ab3bd31fd7 *inst/unitTests/valid/Validate.MoM.RData
3f7d403802db8ccabc2c486a65582862 *inst/unitTests/valid/Validate.PCA.RData
ce36a913ed9cf8c6bf0e86530922b916 *man/SNPRelate-package.Rd
6bd7f9d1c82ce845a76ff905da592581 *man/hapmap_geno.Rd
d857ebb4d2a96ca55f5e250e30f23d0f *man/snpgdsBED2GDS.Rd
cf41676322bd993ad8122422c9da94dd *man/snpgdsCombineGeno.Rd
51338af7d96b8ffeadf9075f405c25cb *man/snpgdsCreateGeno.Rd
0fca2452d416d42443195e2c3033e9f1 *man/snpgdsCreateGenoSet.Rd
6de70d4baed13bf86436f02970f066a9 *man/snpgdsCutTree.Rd
0512ddd864f2878893469a3d900b6d9d *man/snpgdsDiss.Rd
3a74365ffd77f8bac33ebb8ea3d1db33 *man/snpgdsDrawTree.Rd
f43f24b171ba8d84f1e983a6d2b4e05a *man/snpgdsErrMsg.Rd
879c4989e034315d9c715bdaf8297ba3 *man/snpgdsExampleFileName.Rd
bf18fc78437149d0ac66d6b4d8ed6c50 *man/snpgdsGDS2BED.Rd
a137651b5478100ca099ea10465a854e *man/snpgdsGDS2Eigen.Rd
83f054c66158b485c1af3b0ff6b661bb *man/snpgdsGDS2PED.Rd
e00e9d349cf180c0a95bebbf8c7ab68b *man/snpgdsGetGeno.Rd
8cfbf111c492d50302eb6c50a9761712 *man/snpgdsHCluster.Rd
bee72a48580b083df539078318692c53 *man/snpgdsIBDKING.Rd
84609d010183b6de3edb4f35a59c4a5b *man/snpgdsIBDMLE.Rd
6d3d467b6a631c7177b342eba4f82fc5 *man/snpgdsIBDMLELogLik.Rd
f156de21c49bf832027983bb92686e23 *man/snpgdsIBDMoM.Rd
318bd488beb2d7289eba19a34970ab5a *man/snpgdsIBDSelection.Rd
b52b47eda1e0ca50559f6a2ba5586d2b *man/snpgdsIBS.Rd
e94d7fc729b6f11d017323907294ec43 *man/snpgdsIBSNum.Rd
da98124fdddb80b9126cf0dba75dd50c *man/snpgdsIndInb.Rd
17250346f80027daaa3ae23574183b0b *man/snpgdsIndInbCoef.Rd
5995ab214e916829e64acf6fff55aa05 *man/snpgdsLDMat.Rd
a3b9c0d83821e7881d4277dc21bd41a8 *man/snpgdsLDpair.Rd
5a2accdd9c4f8eda4c2b3596f2f8d36b *man/snpgdsLDpruning.Rd
ef8a3b311f7bc095300afc7d09609ef4 *man/snpgdsOption.Rd
057b9f4162aa7f9d75624c9ad2d5f84c *man/snpgdsPCA.Rd
cc9b58713a8abda646f1425c16940a60 *man/snpgdsPCACorr.Rd
346468d488885fd8872473bb12a77d1e *man/snpgdsPCASNPLoading.Rd
9d61aa5528607b8c094225e99ab4ec60 *man/snpgdsPCASampLoading.Rd
790dc80e883b28e2a1f55ea38f9c2361 *man/snpgdsPairIBD.Rd
0f68b5459f78578d6d7e9028645a5ceb *man/snpgdsPairIBDMLELogLik.Rd
ecb5efb4b9e62a089c1e84de92049778 *man/snpgdsSNPList.Rd
cad67ee11a6df54fc4131e983894a36e *man/snpgdsSNPListClass.Rd
ee9096a8fb4fd78ab8248d323134389b *man/snpgdsSNPListIntersect.Rd
245e8f59d551d1978bd0e3ce943705d8 *man/snpgdsSNPListStrand.Rd
355dfe18f7fc70a905b640d8d37ce0c0 *man/snpgdsSNPRateFreq.Rd
7197f61f0b83c9c8516642805b990cbf *man/snpgdsSampMissrate.Rd
e4adfc01166940d85e96b789d5a64505 *man/snpgdsSelectSNP.Rd
67f1c1c820e16337feaea486e1b48bbe *man/snpgdsSummary.Rd
95a2d61e4e3c5756efbec48f6dce0c14 *man/snpgdsVCF2GDS.Rd
262024875c8ea231522f791bab5ffdf5 *src/CoreDEF.h
dd14744cef01314da019ca18f7a9420f *src/CoreGDSLink.cpp
73502c7e54ea05519ac1cb88fdd061ea *src/CoreGDSLink.h
869c3c72b7e4e3f97c32167521a4299b *src/Makevars
c71d2262009989cca88a258a04f59524 *src/Makevars.win
ec7d065dfc9b69c5e9204855e6dc9d84 *src/SNPRelate.cpp
0ed37db150304cc049e176b0f64c4198 *src/dGWASMath.h
3f504c586425f74eb04bfaa5d5500498 *src/dGenGWAS.cpp
62473e989b4596e6f3374986958b2db2 *src/dGenGWAS.h
cffa6b30f0e4732fd3a3f686e67f54aa *src/dType.h
ce62540277c3b25ea35e69f28c084b04 *src/dVect.cpp
f4319792f9bfd978f488d12bdba2cb8f *src/dVect.h
765863716f8636537e1d6f81a4b308a7 *src/genIBD.cpp
053351a483aded7387b199bdf3e9337f *src/genIBS.cpp
6f834dd62771e258dfc2d45e07fdbaaa *src/genLD.cpp
1cf905d789ce853283923478ad22a4cb *src/genPCA.cpp
b2a430f628ba19f9534311945243dbde *tests/runTests.R
2e46d7b0cdea051f4e0c287a541b01cc *vignettes/SNPRelate-Flowchart.png
d09d6bb49f8d52c65e39ba5d4eb6a1dc *vignettes/SNPRelateTutorial-IBDMLE.png
4657876555eda08cf430b6fb92e1025a *vignettes/SNPRelateTutorial.Rnw
