Package: SSDM
Type: Package
Title: Stacked Species Distribution Modelling
Version: 0.1.0
Date: 2016-02-12
Author: Sylvain Schmitt, Robin Pouteau, Dimitri Justeau, Philippe Birnbaum
Maintainer: Sylvain Schmitt <sylvain.schmitt@agroparistech.fr>
Description: Allows to map species richness and endemism based on stacked
    species distribution models (SSDM). Individuals SDMs can be created using a
    single or multiple algorithms (ensemble SDMs). For each species, an SDM can
    yield a habitat suitability map, a binary map, a between-algorithm variance
    map, and can assess variable importance, algorithm accuracy, and between-
    algorithm correlation. Methods to stack individual SDMs include summing
    individual probabilities and thresholding then summing. Thresholding can be
    based on a specific evaluation metric or by drawing repeatedly from a Bernoulli
    distribution. The SSDM package also provides a user-friendly interface.
License: GPL (>= 3) | file LICENSE
LazyData: TRUE
Imports: sp (>= 1.2.0), raster (>= 2.4.20), methods (>= 3.2.2),
        SDMTools (>= 1.1.221), mgcv (>= 1.8.7), earth (>= 4.4.3), rpart
        (>= 4.1.10), gbm (>= 2.1.1), randomForest (>= 4.6.10), dismo
        (>= 1.0.12), nnet (>= 7.3.10), e1071 (>= 1.6.7), shiny (>=
        0.12.2), shinydashboard (>= 0.5.1), gplots (>= 0.1.0), spThin
        (>= 0.1.0)
Suggests: shinyFiles (>= 0.6.0)
Depends: R (>= 3.2.2)
Collate: 'Algorithm.SDM.R' 'Ensemble.SDM.R' 'Env.R' 'Occurrences.R'
        'SSDM.R' 'Stacked.SDM.R' 'checkargs.R' 'ensemble.R'
        'modelling.R' 'ensemble_modelling.R' 'gui.R' 'load_model.R'
        'load_occ.R' 'load_var.R' 'plot.model.R' 'save.model.R'
        'stack_modelling.R' 'stacking.R' 'update.stack.R' 'zzz.R'
NeedsCompilation: no
Packaged: 2016-02-11 21:56:31 UTC; amap
Repository: CRAN
Date/Publication: 2016-02-12 00:55:58
