dad81b29813abfc388449a6caa0a287e *DESCRIPTION
349d5b9e12d12a3155476ffae9c98469 *NAMESPACE
22a22bd9bc82238b58c602b4304cab7f *R/RcppExports.R
fecd77cd438a5028f0c5e5e726305682 *R/combine.table.R
ff9f444b40ecdc31b79cd5437122ab27 *R/final.score.R
42e824044104438bb8603789a1df5d59 *R/get.context.R
cdc1de1705df9e7ff9ba7ee5d8a7ce7a *R/get.exprobntcx.R
4e97ae30bc8a9c2a3f82ef29fc22cc98 *R/get.nucleotide.chunk.counts.R
cd243606fc7ac9a8f22c3a9459fea594 *R/get.pair.R
ceca979c241c18b3a124e51a961040b2 *R/get.tn.R
ed7e81c0fbf86af3b63af4c54d64e068 *R/get.toptn.R
bbca4a41e1783475f6df6401e75b3395 *R/get.trinucleotide.counts.R
8bcc24bff33b4b4640e6ce88a4a15c3d *R/seqkat.R
d597dc02f8adcb15963e57205b7b05a9 *R/test.kataegis.R
15681b8a66212d651f15bb6f323139b3 *build/vignette.rds
40e372f30cb0e2697ea08212dc7c05f0 *exec/generate.trinucleotide.counts
f424633fc02fbb9aa3adb5bad200c536 *inst/doc/vignette.Rmd
9837f3b6844a749ec39ab0aa0d9d591f *inst/doc/vignette.pdf
5fd23a02a717d6a06096b585d7bde65c *inst/extdata/length_hg19_chr.txt
9f3c7c7c11522b2863343477c6eec733 *inst/extdata/length_hg38_chr.txt
186a568b7a9f89a0a37e52318d7d67da *inst/extdata/test/PD4120a-chr4-1-2000000_test_snvs.bed
3c55aa0ec28c76cbc5288d8de9a74a74 *inst/extdata/test/length_hg19_chr_test.txt
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr1.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr10.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr11.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr12.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr13.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr14.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr15.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr16.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr17.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr18.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr19.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr2.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr20.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr21.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr22.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr23.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr24.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr3.fa
e144a5717d663235d4e942647ba23d4a *inst/extdata/test/ref/chr4.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr5.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr6.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr7.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr8.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr9.fa
2819b139bc8da0e626dd3d4b00055576 *inst/extdata/tn_count.txt
642ab54af92bec1c922799b3848d6624 *inst/extdata/trinucleotide_hg38_whole_genome.txt
22ae7112b1aa9d55e5014cb0a46ef1ee *man/combine.table.Rd
7fffbe567e2d2d33e4de12cef3126954 *man/final.score.Rd
c2b3a3fc096710c3ef07c58fd4a542ba *man/get.context.Rd
78ce6755c764b4306bbef7d52cbc126c *man/get.exprobntcx.Rd
7454bd6fb3a81211f5adfa182ee29e2e *man/get.nucleotide.chunk.counts.Rd
c280ac760779f1efd6f8fb347e217433 *man/get.pair.Rd
17cefde6625ffd9ce17b0f8c020e6145 *man/get.tn.Rd
c87ed477c34a21c24ec802185e7ddf78 *man/get.toptn.Rd
dd840e29572bbf482baa911866adc2e1 *man/get.trinucleotide.counts.Rd
7e3995cf99ef8d74e37c11b2cdb18566 *man/seqkat.Rd
6e512b772ff93e0654b2d388686acafd *man/test.kataegis.Rd
d27212673fbb6b3422e90813c31389cf *src/Makevars
2c191867d785ec263a52669ff1533dcf *src/Makevars.win
f8db544ba6be59282ffffe7e9789ea9f *src/RcppExports.cpp
7f60b4eaa400a45bd212329cb7d52336 *src/SeqKat_init.c
d6ca06603c13c22afae1eadb7a61538f *src/cget_nucleotide_chunk_counts.cpp
ceffacbd4c07a544e7574cc53824e6ee *src/cget_trinucleotide_counts.cpp
587e70fec34e92b30007d9a14283980d *src/cpp_get_context.cpp
ae32587a96720091d9d4c3ef95c3d3f3 *tests/testthat.R
aa642b09f758fcf31e1dc609273c8d11 *tests/testthat/test-seqkat.R
f424633fc02fbb9aa3adb5bad200c536 *vignettes/vignette.Rmd
