3064f5d5a7a9fe7c3bd7ef1349229d1b *DESCRIPTION
2947d42c057b53251b8e9ebdf8d9fdcc *NAMESPACE
ac670cd75958dcc67df15d5e17aedf97 *R/RcppExports.R
5cae63c70a5654eeb4ba1d73976efec0 *R/cytoscape.R
954b43e45ea3132f0d09b9c028357072 *R/data.R
363516029eacac451f41bfeb057abe2c *R/gen_rnaseq.R
6cb790b223fa14664d54ad3820baa2f3 *R/gen_zinb.R
a31b4d3891bc49729d5742b5396b84d3 *R/generics.R
b75a6924061b3004b93449de9a1fe2cb *R/ggm.R
1911bc9cd2f1a2cb2b12dcdb3ee72c4b *R/imports.R
5622288422d24792ed96edb97f5cf329 *R/misc.R
df6654e87d4895c02fd8df303a0073f4 *R/modules.R
7d891dd6d53e32e0c5a3785d1d528afe *R/networks.R
b6475766e96dbfd94ea251a242fcc70f *R/plotting.R
91d0b48533fa89b66f64354e99c07a4a *R/reference.R
9c6a370b01c179b79470216c31cbcd46 *README.md
b4b8061b9d0ac9812995a11cc2941a51 *data/datalist
d4585f249ad641082b8906d8b7b13727 *data/reference.rda
a382bf885ba301748f7b2c923b6ff210 *man/add_modules_to_network.Rd
f1c40061dcf2a84b8e9667fe37ad0f09 *man/add_random_module_to_network.Rd
fbe2f9e0c50c82e38a18f0a530dde621 *man/all_networks_contain_same_modules.Rd
e93c021b310f6c98680c91aeba5e9c71 *man/all_networks_contain_same_nodes.Rd
c9889c3550a890f8013f95fac70ef1ce *man/as_single_module.Rd
748363fbf7ab3d4becbbe8563dd8a08c *man/components_in_adjacency.Rd
b8a3e2f5b6fc78b2331c1632b70b939d *man/connect_module_structure.Rd
ab40f8064f167b1991c0e742101fdecf *man/create_cytoscape_file.Rd
aec47b381cc0f5be4ebd981b5423a000 *man/create_empty_module.Rd
e8719fc96daa33496982328b11a194e6 *man/create_empty_network.Rd
4f19b51658fbcdbdae9f5b2918de31cf *man/create_module_from_adjacency_matrix.Rd
ba9351b09714792d3b790029377c0d08 *man/create_module_from_association_matrix.Rd
301cb0720e97a5fbd9bf93ab1ab877a1 *man/create_modules_for_network.Rd
f2d8cd40d6c6c4374583b087f2c284f2 *man/create_network_from_adjacency_matrix.Rd
7a5f37d36d310663326e5c84680a3947 *man/create_network_from_association_matrix.Rd
c2ff3115de429544700d6522bba15e4c *man/create_network_from_modules.Rd
4adb8af2fca3db8bfa6c1343935ab915 *man/dzinb.Rd
143f14a2dc0afc2070830d5fe54b4251 *man/ecdf_cpp.Rd
57c979bb86d36ec3109637edf944f14a *man/edges_from_adjacency_cpp.Rd
788ec36b34750810a0b9007b22f68205 *man/est_params_from_reference.Rd
3f7ba908bc29d454c03edb530003b4e6 *man/gen_gaussian.Rd
12a89ea21157caa8f75326b6454ac4d0 *man/gen_partial_correlations.Rd
057f324810750224747ecb75388493d2 *man/gen_rnaseq.Rd
14f9df647773a250b673ab504d2fe3e4 *man/gen_zinb.Rd
4e3a488d46fbbaa6183874faa321ab80 *man/get_adjacency_matrix.Rd
67c9ef4995e93688c010b0f6b2d3a1bc *man/get_adjacency_matrix.default.Rd
b3d832ce3948e5d5cd8032f85e8b1e49 *man/get_adjacency_matrix.matrix.Rd
3181b9d87adab73c09e3f7012e92ec8d *man/get_adjacency_matrix.network.Rd
c7dc001bf86e6faea9160eee2ac97184 *man/get_adjacency_matrix.network_module.Rd
dae2b290cd5e0a5915c2f30b9467a886 *man/get_association_matrix.Rd
b63ad440d61a367a2649ee70f410dd85 *man/get_association_matrix.default.Rd
12d2ff131ca589895d0e1e59d6e1907f *man/get_association_matrix.matrix.Rd
b02a1fd4b64e95fa79d944fc2ebe026e *man/get_association_matrix.network.Rd
788e7bb7a2d871b56cd691f1dc36c11d *man/get_association_matrix.network_module.Rd
21b9401f0e5c4b174db7572422db76f2 *man/get_degree_distribution.Rd
9c7a4909a2780341db26ce9b41db972d *man/get_edge_weights_from_module.Rd
cb96e897997ae8e4fdeffd057dc75056 *man/get_layout_for_modules.Rd
82d82a9449bf740ab1cc793d1f741058 *man/get_network_arguments.Rd
b3ff59838548ffe248475d2491bb8c2c *man/get_network_characteristics.Rd
64c34fc5e3605730bf115b76e96894a4 *man/get_network_modules.Rd
1c286fb1130b4c6f629b506ae7d46ffe *man/get_node_names.Rd
b5f72bcf53cf2fa23533d06955f583f9 *man/get_node_names.default.Rd
4e01ab960af46cc0c37d38758c7d7795 *man/get_node_names.matrix.Rd
a67d187431e61cbb889f1323dd7123e9 *man/get_node_names.network.Rd
fc18fe9ca7e12f02d37af6ae6475abb7 *man/get_node_names.network_module.Rd
06e1380a7255bcf57c69b107f94cb494 *man/get_sigma.Rd
138750c9fa1c0f3cf8a600cd8b54ef5a *man/get_sigma.default.Rd
aef2a6a9f5223602032682b71db6c30d *man/get_sigma.matrix.Rd
d61ac329fa7f0741c6c1a10dd84e7a67 *man/get_sigma.network.Rd
b47a90ff4776eb61f2372724f6e9ecde *man/get_sigma.network_module.Rd
e33bb3aad3ba2017f458e7bb65c703e2 *man/get_summary_for_node.Rd
2979d3e9f7962bf638f8874f2a9e6183 *man/heatmap_network.Rd
0b06a678f57acd1aef9e8cc49aa97046 *man/is_PD.Rd
d85a9f3953d2b1a9d7fd9ee5e883efc9 *man/is_adjacency_cpp.Rd
37561fbad526138ba86e79778498378b *man/is_symmetric_cpp.Rd
d80a50ea830a31e090f5447a25b8c1d8 *man/is_weighted.Rd
ddf187734a99616c908fe50e99f1f6f4 *man/is_weighted.default.Rd
6e2770fe87f0499112e2faecebd66534 *man/is_weighted.matrix.Rd
58f6b6992e202d63e5a5a5ba0b184993 *man/is_weighted.network.Rd
6cdccb0173b44b8ae6a65f6c86097d03 *man/is_weighted.network_module.Rd
5628e86369c9a5267824a61d952bb731 *man/perturb_network.Rd
bcf2bfb04418af239ce20a34b398946a *man/plot.network.Rd
b528a8eecf4da1341347a97cd89663e4 *man/plot.network_module.Rd
f82271ad812b35feabff5c1998907fac *man/plot.network_plot.Rd
2264b794e8e329d0f682078f4e107375 *man/plot_gene_pair.Rd
cad918083458387b056d496180e6ed1a *man/plot_modules.Rd
3580b6bf3bd1eb2ffc0867276bde200e *man/plot_network.Rd
b4b55d3c82934e5f984f18fee3810cc9 *man/plot_network_diff.Rd
7602f1ca8363ff073206fd0f2ff244dd *man/plot_network_sim.Rd
acb2db7ac67eeae8e057f72d480eaa15 *man/print.network.Rd
4b3204584ca2712785c522519f9919b5 *man/print.network_module.Rd
e6f43e766a321de29131b6c6a999d66d *man/print.network_plot.Rd
97b1cb65cfe93af942325f12007b93df *man/pzinb.Rd
bc3eadd4a4a0061518a19cd04ece07cd *man/qzinb.Rd
db78dfd4df0895c98b4d592a01fce718 *man/random_module.Rd
46c467ebb8b43ac66229a7435fe5aead *man/random_module_structure.Rd
22dc2c4e9473b6eb9d38b206afbd5b04 *man/random_network.Rd
05bd85a37c46a5fc4fe6da6284ae4a29 *man/reference.Rd
b914c6f84b5b80bedb690ce737e64c67 *man/remove_connections.Rd
22f4eb6975f91b5e15ca1f4552a0cd10 *man/remove_connections.default.Rd
5be9b025c4c2871a9efcf2ec61e92b8e *man/remove_connections.matrix.Rd
0603656c70bbc0a6f31e93fe0c519ca7 *man/remove_connections.network.Rd
2dccc262af2d163a92a3c851989c3d68 *man/remove_connections.network_module.Rd
0880b88a75632b6da643a9f00499fe7a *man/remove_connections_to_node.Rd
3e54f23ed96df3167558fbe67238595a *man/remove_connections_to_node.default.Rd
577bde09e8328eecdfe7e72b38b66663 *man/remove_connections_to_node.matrix.Rd
22c6954fd8e72af3f4cd6e05e89b09ac *man/remove_connections_to_node.network.Rd
125e74acc8fec68636199bdb4962a3eb *man/remove_connections_to_node.network_module.Rd
987dc556b74dfd5f5610333563243e97 *man/remove_weights.Rd
c48d1f6483e99355395f1e008097b061 *man/remove_weights.default.Rd
86589fbf8710b5177c637b73aeab534f *man/remove_weights.matrix.Rd
60e0eba9b456f4edf42cfbcbb834236d *man/remove_weights.network.Rd
96a8032b4c48f80741104094173c96bd *man/remove_weights.network_module.Rd
a826ec9fb0809320174d09d14c88c77e *man/replace_module_in_network.Rd
2fb46e0b4046a8bfd2e6fb2ac7a1202d *man/rewire_connections.Rd
689d415c0f1d9bdfa34e190433b05c7d *man/rewire_connections.default.Rd
de476a144ab9c9f48b5fefe0aa8a3272 *man/rewire_connections.matrix.Rd
124aaa18add0832447ca7dbaf206dfa6 *man/rewire_connections.network.Rd
ca75a92b0b4ccadb37cbb46723847765 *man/rewire_connections.network_module.Rd
9f8cc5aea6f45c8579a59df4c2c0aba3 *man/rewire_connections_to_node.Rd
b0b5486d2b0c58f0915edaefbc3690c1 *man/rewire_connections_to_node.default.Rd
692f05082309bc81e9cb891341b45e97 *man/rewire_connections_to_node.matrix.Rd
5663291f4363d5ca6301bffeff28dad8 *man/rewire_connections_to_node.network.Rd
bbc9ea065df9ab791073ee78aac3325a *man/rewire_connections_to_node.network_module.Rd
7cd2cba8de27198e05eb7057b79f2023 *man/ring_lattice_cpp.Rd
3029d99af3089320d37ba6f5d50786f0 *man/rzinb.Rd
d16b256a50eb4f746661bf31d5f9ea73 *man/sample_link_nodes.Rd
22f9e7e3929ae1d3000678fb9d45ddf3 *man/sample_module_nodes.Rd
33b265674d6553119a559501fa8cc859 *man/sample_reference_data.Rd
6662e44def8a482f9b4a5d6e69b1c4f1 *man/set_module_edges.Rd
5687d69a9ae8826ff05d38b0f3ec1929 *man/set_module_name.Rd
85b22047848a3fd9c5774e9104cafb14 *man/set_module_weights.Rd
80c9ea993fe8d74e4cc0a550c593a4e4 *man/set_node_names.Rd
d4851c5970e4922d59929884ad2556e7 *man/update_module_with_random_weights.Rd
4ed487c0ed20dc98862d2c998b8b68e2 *src/RcppExports.cpp
8ac893d90a7ee934950c18359d87abd6 *src/components_in_adjacency.cpp
7ad84363acee17dc2afbb7f6ecdadd29 *src/ecdf.cpp
9e6d82fc2726148d889f628f7c601efc *src/edges_from_adjacency.cpp
20e4729c84ddd8df6a0113a66e67f925 *src/is_adjacency.cpp
8bbdf76c65d50c168ae91b8213c31958 *src/is_symmetric.cpp
000cabc44802e66fc70b4e3bea3a901e *src/ring_lattice.cpp
b183bcbdfa89513916b8c14518039677 *tests/testthat.R
24b75b7d6fd42f68470eb9943851aa39 *tests/testthat/test_cpp_functions.R
229fb09a1ebad520755acce0e6fb815e *tests/testthat/test_create_network.R
b268e578850dbc8a0f2310526ed101a7 *tests/testthat/test_gen_counts.R
288aa47af301ac2fd83cd9f8d3cf5bbf *tests/testthat/test_network_node_names.R
174e8fa7c5905ba387653922e7215ec0 *tests/testthat/test_network_structure.R
7ae25dc5db7d22af0eff842374c9a158 *tests/testthat/test_qzinb.R
2c0e0dcfc55bab474358a0bb3c444393 *tests/testthat/test_random_network.R
1f86fcb4da502f2fad59879e2443d1f2 *tests/testthat/test_sigma_matrix.R
