6dfe906eb6a92acec16f4f8a0ab0b896 *DESCRIPTION
c4c131d02f28fccba179b61a718527c5 *LICENSE
b9d6a7cadf49374219cbd9861dff5699 *NAMESPACE
19901110b13f610da5d98461026c7b4d *NEWS.md
407ce6ea347fb0df9e121c81b418de37 *R/RcppExports.R
c4a623a39cfcc1294400b7c7cd363a61 *R/data.R
21ff8c74dfa1c41027d844d5de3bcdfd *R/dimension_reduction.R
98347b84243671533a8ea671c044389e *R/footprinting.R
bcbb9b3d72c79e0e57c350bc9dfee69b *R/fragments.R
fa25d2ef0595f1f748065c40d4c6ccb1 *R/generics.R
e597ef78a4dbb4729a227de9a61d8aa1 *R/genomeinfodb-methods.R
6e70fe636a4457e79472efa06f1386b8 *R/granges-methods.R
bb8d573f0d893e8615b20c93e605f6e9 *R/iranges-methods.R
e406aad6eb7075a5f9edcbef701961a4 *R/links.R
473be100ae8eb45281969e5ac14050a6 *R/mito.R
a1234ad337396dfca613de3fa397b45a *R/motifs.R
ba184fac9578143f5708bb97f958eafb *R/objects.R
905f030ee804cceee9da7a04e24a74e5 *R/peaks.R
47557cb366d2e4ba7d6988d11e16285b *R/preprocessing.R
7b28cd4ac33a07ad9a21d42cd8d0a206 *R/quantification.R
6a515ebc00a660230cdbbc9f1e4302f4 *R/utilities.R
e4b5d8077b521d3b502e0448d6b90cb4 *R/visualization.R
46993c886fe0b4df2296a0d799ff8cb7 *README.md
92d38b9c59b9de575d3da46a9f2947b0 *data/atac_small.rda
e44ce034696b2a7650c4c103e848a7cd *data/blacklist_ce10.rda
84116d6460f16fad743f6eccfc923c63 *data/blacklist_ce11.rda
9cedcbeaa9f92aafdc59986d77475023 *data/blacklist_dm3.rda
b5a7cd786ba389ab851502a6a74fafe3 *data/blacklist_dm6.rda
67d0ece372cec5b3bf8d0afec6f50ae1 *data/blacklist_hg19.rda
a8393a223bb605d71ceb835e11b15f7c *data/blacklist_hg38.rda
75017f216f1a3dcbc7b9ec037b923e7d *data/blacklist_hg38_unified.rda
7e432170b3d2fbc25d558ddf6d1ecf7e *data/blacklist_mm10.rda
26a0f5eb639885c6c1f1a9a4839041e5 *inst/extdata/fragments.tsv.gz
df1eeeaeb35987e59fafad9e2cd74ab1 *inst/extdata/fragments.tsv.gz.tbi
a1baa34c2db4564ae69c7974a09334c0 *inst/extdata/test_mgatk/chrM_refAllele.txt.gz
6c1c29df4269a2e19b16aabf722a4329 *inst/extdata/test_mgatk/test.A.txt.gz
91882adb17e81e7f12ef0d97733ccc2b *inst/extdata/test_mgatk/test.C.txt.gz
1e276b4801920e7df8112de79cd444ba *inst/extdata/test_mgatk/test.G.txt.gz
2fa3bbc55c7ed62738e95da7b5d1e4a3 *inst/extdata/test_mgatk/test.T.txt.gz
208c6cb740ecec1cb5b80965a150597a *inst/extdata/test_mgatk/test.depthTable.txt
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48518eabdf1a9761b8a787bf06a7d558 *man/GeneActivity.Rd
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4aa1a4b97ce27e4e3394ff5040440103 *man/GetGRangesFromEnsDb.Rd
77a656d0650923b0d257616f9d381da7 *man/GetIntersectingFeatures.Rd
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ca59280d632bffa5a38596ad095719d4 *man/GetLinkedPeaks.Rd
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1042f00d70c50aea7edadfc6295c281e *man/GetTSSPositions.Rd
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1786da58285549a852ff0db50830dbda *man/InsertionBias.Rd
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eee896aee3dc37defa8cf954fe2cf7c4 *man/LinkPeaks.Rd
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2927958556e79ab441da5e7161051ed5 *man/Links.Rd
ccf4dcfb7849706874cd8c45c1c5e7b8 *man/LookupGeneCoords.Rd
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790e98bdbfa1a2cf8e4c290ec9f9791c *man/Motifs.Rd
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5668a454a0a7cbb17adbc59d3e0e0d38 *man/SplitFragments.Rd
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8684cdea5a38dec3e83725e1c844c17d *man/blacklist_dm6.Rd
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52bb9fbe2a0db14b1b285f6d5191d50d *man/blacklist_hg38_unified.Rd
376a59b5f3d9e3db95dea4de70a4f02e *man/blacklist_mm10.Rd
18b08774338977efc88c5980077e7912 *man/coverage-ChromatinAssay-method.Rd
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7e33efb27dfd497c6407bb3abc72c7b1 *man/subset.Motif.Rd
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