5797fc431b7ebb889da945b87d15cf09 *DESCRIPTION
d2b104ec26bc8a04a5f194060a707668 *LICENSE
423e4d692f595580baed1f30617c50f0 *NAMESPACE
f8ed6c94854263fcbaec351f75557999 *NEWS.md
407ce6ea347fb0df9e121c81b418de37 *R/RcppExports.R
3ddce02e78a4e04186a265b07c8e77f7 *R/data.R
d7bb0e722d412e298ac77819b89a718d *R/differential_accessibility.R
0d63cdb5f742b6ff14b4497d0ecc92cd *R/dimension_reduction.R
e67077af03c270ca476f5af0e69f91d2 *R/footprinting.R
4952d9d7c0373f1851e5722c51ecc674 *R/fragments.R
4c73d71c0bfa36c9d4f9da55aa07efa9 *R/generics.R
e597ef78a4dbb4729a227de9a61d8aa1 *R/genomeinfodb-methods.R
6e70fe636a4457e79472efa06f1386b8 *R/granges-methods.R
2800bf37da0c608142f3a2eb71d51048 *R/iranges-methods.R
4069b3ce9c9c8296283db9fd0ae9a550 *R/links.R
a55826b72949c604c3c699bd054dbbf3 *R/mito.R
b029e2a37f858c3a0b240c027b498389 *R/motifs.R
7276e85bcd2f33d00900e7dee664bf44 *R/objects.R
36fa1f513b4a680bfb7d20993aef9036 *R/peaks.R
71d6fed58a84574221759230994a6d51 *R/preprocessing.R
9b3445f7d35911cb59b947a1a297b801 *R/quantification.R
b85242e324a8eda990d44157fdd9b4bc *R/utilities.R
74fa6d91005fc09d304b5c988d7b90ac *R/visualization.R
f60ac202abec8fd852e144f8041504c0 *README.md
481a700fa980810d939d43471039bf78 *build/partial.rdb
92d38b9c59b9de575d3da46a9f2947b0 *data/atac_small.rda
e44ce034696b2a7650c4c103e848a7cd *data/blacklist_ce10.rda
84116d6460f16fad743f6eccfc923c63 *data/blacklist_ce11.rda
9cedcbeaa9f92aafdc59986d77475023 *data/blacklist_dm3.rda
b5a7cd786ba389ab851502a6a74fafe3 *data/blacklist_dm6.rda
67d0ece372cec5b3bf8d0afec6f50ae1 *data/blacklist_hg19.rda
a8393a223bb605d71ceb835e11b15f7c *data/blacklist_hg38.rda
41e02a8f0a96b7fe1cf524da808c3298 *data/blacklist_hg38_unified.rda
7e432170b3d2fbc25d558ddf6d1ecf7e *data/blacklist_mm10.rda
5f751316987d0d6d754b7342bad0741e *inst/CITATION
26a0f5eb639885c6c1f1a9a4839041e5 *inst/extdata/fragments.tsv.gz
df1eeeaeb35987e59fafad9e2cd74ab1 *inst/extdata/fragments.tsv.gz.tbi
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5ac0e5670db1a77c7c2d0466adb000c2 *inst/extdata/fragments_header.tsv.gz.tbi
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91882adb17e81e7f12ef0d97733ccc2b *inst/extdata/test_mgatk/test.C.txt.gz
1e276b4801920e7df8112de79cd444ba *inst/extdata/test_mgatk/test.G.txt.gz
2fa3bbc55c7ed62738e95da7b5d1e4a3 *inst/extdata/test_mgatk/test.T.txt.gz
208c6cb740ecec1cb5b80965a150597a *inst/extdata/test_mgatk/test.depthTable.txt
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3855c9e65151c46a5160b090ab88567b *man/GeneActivity.Rd
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155397877783bb08f5208881dbfccabd *man/GetCellsInRegion.Rd
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6713e9885cef50df787c0fb3fd3c87c4 *man/GetTSSPositions.Rd
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1786da58285549a852ff0db50830dbda *man/InsertionBias.Rd
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45208e5b0c0c3b8d91d2f7c1b1ba7c67 *man/blacklist_ce11.Rd
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70b8b0292776a95d72f0ac09e0ffdfb7 *man/blacklist_hg38.Rd
4754f7a70701102baa9c68ec85f621d3 *man/blacklist_hg38_unified.Rd
759cf2233d39b3f294f1c2bfad00f506 *man/blacklist_mm10.Rd
18b08774338977efc88c5980077e7912 *man/coverage-ChromatinAssay-method.Rd
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