939f3466254748457b96681689902ed3 *DESCRIPTION
0c0080d828e632c89aab02fe8c963ed6 *NAMESPACE
57b185f71a113667b1e120fa4ff71e4a *NEWS.md
61d98c48952ef867de7fde7f711bab92 *R/ABCRef.R
96bbc171ab0527353a40f5c51da51efc *R/ABCSMC.R
b838af25d9aad689fdda14509e63f690 *R/PMCMC.R
2f4c14834c409f12e01d4e9b6ad40e3b *R/RcppExports.R
cb716f2de044cc2bea99bbeabbea5aec *R/Rcpp_mparse.R
df89502bd23bdb411c28b9b486ddf670 *R/SimBIID-package.R
beeccb4450609e4ddb437f8ac8a2f266 *R/bootStates.R
4aa50eef223012deefdec0522de88c82 *R/checkInputs.R
b5b55f65f8d5fc3e547fd5552544dcc5 *R/compileRcpp.R
edbbeccccdd32e059c0c06dfae722041 *R/data.R
5f99d83f8f42c9bae33a72cf4c1ef548 *R/mparse.R
0c2bbdab117310489a2946c86b712f72 *R/mparseRcpp.R
b09e748c3dfdadaae1b81ba872225b5b *R/plotABC.R
ace07a9c077e9d752d59d4d78e2e8a33 *R/plotPMCMC.R
ae4cf1c24e48da3e9b088c86f4485e3d *R/plotSimBIID_runs.R
8f94282702273d1f4af0af803025844e *R/predictPMCMC.R
d5fad8acdadb3bc3f4654c96ed014fe9 *R/printABC.R
5ceaba29d3289b50f94d0bcc105831bf *R/printPMCMC.R
3ff79201a8158425a55611cc1b391b3a *R/printSimBIID_model.R
3ccb9a96253b8f89c739ef7f0035bf68 *R/printSimBIID_runs.R
034ab25802273ec64065d60adfa0a757 *R/run.R
22824e515aaa409b4b265a717d14d8c0 *R/runProp.R
54155fc96f2f8becb9ddd1cadff20f25 *R/runRef.R
c17008e95f78d0acb10328780612fa7c *R/summaryABC.R
4b06214a73af452251a086a803b1b90b *R/summaryPMCMC.R
a048734c5430890c03d8813d98c4d12d *R/windowPMCMC.R
1ae91436346f6bee6125d28348462184 *R/zzz.R
aeaeb6f2096395d438c1cead5048d86b *data/ebola.rda
d14684226d0d52b178051fb41325e330 *data/smallpox.rda
564c7125448d590e818203d36cf38325 *inst/simFunction.R
43c8fac6e0bf2125c88ef8f222033420 *man/ABCRef.Rd
aa31650bd89b73998457386762e4b735 *man/ABCSMC.Rd
908cf784f9b93b6deac4f258c033f07f *man/PMCMC.Rd
96d9c1c0eb22fc16f1c77ab9cb88d983 *man/SimBIID-package.Rd
d6a54028bcc618051d79000c2618abf2 *man/compileRcpp.Rd
2787cf6672db5b5179e17a8062b9c2a9 *man/ebola.Rd
ba5e1f687b8fec30404dba871b0f8b1c *man/mparseRcpp.Rd
49128e9a49b98dc39e49a81147553dc4 *man/plot.ABCSMC.Rd
4ab917165a634d3bf4ede1b4258cecdc *man/plot.PMCMC.Rd
5ce06121fb3fc621d8aec31a1354ea9a *man/plot.SimBIID_runs.Rd
edb83a97f2c873986cd341b8a7ed53ac *man/predict.PMCMC.Rd
4992a62b9d83016d92c12ae5247ab6e5 *man/print.ABCSMC.Rd
90f76655578a7dd5ba298e4b657535f9 *man/print.PMCMC.Rd
a5c89f6beb628d4293f71e489f82775e *man/print.SimBIID_model.Rd
8094850e7d71632e951946eb4604b642 *man/print.SimBIID_runs.Rd
19db5b586cadd9513602bd82d25f993a *man/run.Rd
5d9258346f634396db7fec11fcc3e685 *man/smallpox.Rd
aa4902c0bfb89c87a1b44023cb38bb93 *man/summary.ABCSMC.Rd
a71d3f99ec50ac98a2bc8fe385a1ab0e *man/summary.PMCMC.Rd
a38f07115b31c1ab1a3685f3616b2c9c *man/window.PMCMC.Rd
932d9c1eedd4f4b0e54aea23acf798c7 *src/Makevars
932d9c1eedd4f4b0e54aea23acf798c7 *src/Makevars.win
6c118e194deed93bef3c8c5fe81fd2ff *src/RcppExports.cpp
6f94b69701a31a1d59e546272d84545d *src/adaptUpdate.cpp
f37051ced1f55f4c23dfe8cfd0f73ba1 *src/bootstrapParticleFilter.cpp
bc78af73335bcdb3a5ac1afa97345902 *src/bootstrapParticleFilterState.cpp
d6bddf4ae5a4981839e76f0cb2004a32 *src/cholArma.cpp
85a0009c75c885b6ccedb65a435a66cb *src/functions.h
05dc0a787836d360c909da343d97add7 *src/mvrnormArma.cpp
504a1d5570c0b641d6d29789b9d8440a *src/pmcmc.cpp
cbe585167024670da4c183b92d69b02c *tests/testthat.R
4df8c1864c61dbde7c287777f692148b *tests/testthat/ABCRef
7d331e5647fa6c8749761e6bf74060e9 *tests/testthat/ABCRef1
a28f0f221d50083ea12c6d6282460059 *tests/testthat/ABCSMC
2d3db98fb9e377b709c1b30a2b3ddc0f *tests/testthat/ABCSMC1
4adf890d60993cb833ff66e9bcb22fb8 *tests/testthat/ABCSMCsum
fce40d6ee569dcda714893d75f46bc12 *tests/testthat/PMCMC
0cd7d999d0b9e1769076c7b606834e42 *tests/testthat/PMCMCpred
5e073aa020b4d9a97f85eb0ac7742296 *tests/testthat/mparse
0db1aa9d59660d552e6ab6673de2727f *tests/testthat/mparseinc
382270d0f716de0944aadea9e577e0a6 *tests/testthat/mparseinctspan
d4e0a02a65ed35db6e1fe24d38a944a3 *tests/testthat/mparsetspan
8bafa7dbe8ed44417b5b606f13c98f8e *tests/testthat/run
da9361698a95a4678c93f94629ecc808 *tests/testthat/runinc
ea7b5e60d7fd42c182009a72614581be *tests/testthat/runinctspan
b8e84b4c648136d3a89f64d98c6d4632 *tests/testthat/runtspan
df75f4b41eac644f60f7e449134595ee *tests/testthat/test-ABCRef.R
622d3a69866f72079fc456d428515a5e *tests/testthat/test-ABCSMC.R
85a4ad99864879cb5693e2324ddf8019 *tests/testthat/test-PMCMC.R
e7f0bcc263689ea28fe2fd43dfc3ccbb *tests/testthat/test-run.R
