53e0440490dfd918ac09471a4a92aee6 *DESCRIPTION
0c0080d828e632c89aab02fe8c963ed6 *NAMESPACE
986453cfb5f2cf7e483d43694bde1e32 *NEWS.md
eb5271fc7d9d97392d69eb476712da40 *R/ABCRef.R
9a777ed62b645b05e0a65ddc25a283a2 *R/ABCSMC.R
b838af25d9aad689fdda14509e63f690 *R/PMCMC.R
2f4c14834c409f12e01d4e9b6ad40e3b *R/RcppExports.R
c8acf273b9c10f2f80966fbf3754b1fc *R/Rcpp_mparse.R
a4de94628ddbf0580a360039e34637b4 *R/SimBIID-package.R
58d333969c9a2fd5484da84ed82c2d8a *R/bisectTols.R
336835e0d692cab28e6729af2a382626 *R/bootStates.R
cbf59217899c1c62ee592839a6150843 *R/checkInputs.R
b5b55f65f8d5fc3e547fd5552544dcc5 *R/compileRcpp.R
edbbeccccdd32e059c0c06dfae722041 *R/data.R
5f99d83f8f42c9bae33a72cf4c1ef548 *R/mparse.R
0c2bbdab117310489a2946c86b712f72 *R/mparseRcpp.R
b09e748c3dfdadaae1b81ba872225b5b *R/plotABC.R
ace07a9c077e9d752d59d4d78e2e8a33 *R/plotPMCMC.R
ae4cf1c24e48da3e9b088c86f4485e3d *R/plotSimBIID_runs.R
214c6a80506d2f32f0f1c938d05f944a *R/predictPMCMC.R
d5fad8acdadb3bc3f4654c96ed014fe9 *R/printABC.R
5ceaba29d3289b50f94d0bcc105831bf *R/printPMCMC.R
3ff79201a8158425a55611cc1b391b3a *R/printSimBIID_model.R
3ccb9a96253b8f89c739ef7f0035bf68 *R/printSimBIID_runs.R
7faf8126c7682f1221567fb9547f2740 *R/run.R
22824e515aaa409b4b265a717d14d8c0 *R/runProp.R
54155fc96f2f8becb9ddd1cadff20f25 *R/runRef.R
c17008e95f78d0acb10328780612fa7c *R/summaryABC.R
4b06214a73af452251a086a803b1b90b *R/summaryPMCMC.R
a048734c5430890c03d8813d98c4d12d *R/windowPMCMC.R
1ae91436346f6bee6125d28348462184 *R/zzz.R
aeaeb6f2096395d438c1cead5048d86b *data/ebola.rda
d14684226d0d52b178051fb41325e330 *data/smallpox.rda
285ef2b56a46418f19020da496134e55 *inst/simFunction.R
e21f743e6c90dd16bf902de37cd398fc *man/ABCRef.Rd
3f2bc2eacda2e037b08d64a001af0b97 *man/ABCSMC.Rd
3c5f9e0bfbddff910fe978710074329a *man/PMCMC.Rd
0b7ec1696e5c753a10b6e13c9d6da158 *man/SimBIID-package.Rd
d6a54028bcc618051d79000c2618abf2 *man/compileRcpp.Rd
405a65d4b73fc7949280855cc8c509a7 *man/ebola.Rd
d2783b0b250e1b37ce38d6648a3847e0 *man/mparseRcpp.Rd
a94a5f3ae7aa2776afa8272ddf81cc2c *man/plot.ABCSMC.Rd
6f045d358ce7784f16e9c6ccd028dacc *man/plot.PMCMC.Rd
1aa02b1f95927514d3d903cc22f8e912 *man/plot.SimBIID_runs.Rd
edb83a97f2c873986cd341b8a7ed53ac *man/predict.PMCMC.Rd
4992a62b9d83016d92c12ae5247ab6e5 *man/print.ABCSMC.Rd
90f76655578a7dd5ba298e4b657535f9 *man/print.PMCMC.Rd
a5c89f6beb628d4293f71e489f82775e *man/print.SimBIID_model.Rd
8094850e7d71632e951946eb4604b642 *man/print.SimBIID_runs.Rd
3693c0b1272a781f620cdc9cecebac92 *man/run.Rd
08d6f85854dc1b814f9c754a3b79d4a0 *man/smallpox.Rd
aa4902c0bfb89c87a1b44023cb38bb93 *man/summary.ABCSMC.Rd
a71d3f99ec50ac98a2bc8fe385a1ab0e *man/summary.PMCMC.Rd
a38f07115b31c1ab1a3685f3616b2c9c *man/window.PMCMC.Rd
932d9c1eedd4f4b0e54aea23acf798c7 *src/Makevars
932d9c1eedd4f4b0e54aea23acf798c7 *src/Makevars.win
6c118e194deed93bef3c8c5fe81fd2ff *src/RcppExports.cpp
6f94b69701a31a1d59e546272d84545d *src/adaptUpdate.cpp
f37051ced1f55f4c23dfe8cfd0f73ba1 *src/bootstrapParticleFilter.cpp
45792d0869094d9dac6c8ec686d6d777 *src/bootstrapParticleFilterState.cpp
d6bddf4ae5a4981839e76f0cb2004a32 *src/cholArma.cpp
85a0009c75c885b6ccedb65a435a66cb *src/functions.h
05dc0a787836d360c909da343d97add7 *src/mvrnormArma.cpp
504a1d5570c0b641d6d29789b9d8440a *src/pmcmc.cpp
cbe585167024670da4c183b92d69b02c *tests/testthat.R
1497197bd08ea1025fd48054856e5d93 *tests/testthat/_snaps/ABCRef.md
c1e23a678e8ecfbc8c21b41e58e1c5ef *tests/testthat/_snaps/ABCSMC.md
84ef15b4d9dc27269edf917f3f21d6c8 *tests/testthat/_snaps/PMCMC.md
e4fca422026309e3b6e055cb391bf1fe *tests/testthat/_snaps/run.md
095c0e656ef4e841d950ff64951ae521 *tests/testthat/test-ABCRef.R
423d953265a7547b8a46c6788a942c7a *tests/testthat/test-ABCSMC.R
3aec8a223d484e58e23a7e15eccaf0b5 *tests/testthat/test-PMCMC.R
94e4ec81ba55880374d655914284f772 *tests/testthat/test-run.R
