336e1a39aa5df7cf5a290ade0574dc1f *DESCRIPTION
9e869a8aacfcee6710a9deec6e342db5 *NAMESPACE
87415b32ab3386cb8354b8b13ea41d92 *NEWS.md
a3f45bef295df36fe703285eb517d306 *R/SEIR.R
90950ff5e4990949e5e3b6f9ee4216cf *R/SIR.R
a3987b9127c29bd73e98cbdf76e52b08 *R/SISe.R
c940bfc20209c857b615c2532337a835 *R/SISe3.R
f88418b9ae234610ee3c45828035f074 *R/SISe3_sp.R
e04ee70ca0f1845c335ab2fe3a913a2d *R/SISe_sp.R
92639e1692c9c24f9a3d612c49dc55b9 *R/SimInf.R
533aae459463ffcb4550c3ca64a21915 *R/SimInf_events.R
5841175e296dcaba0a3f5a97c3051576 *R/SimInf_model.R
dd1582cedd48c696e75845c17e2f5575 *R/check_arguments.R
790e0db4c397d5eb5b6c4cfd82b772de *R/degree.R
e5a1703388eacb2d3ab24a73d7ae0bf8 *R/distance.R
64d6ffb6f3e9f784e3d5ffc714184cc1 *R/mparse.R
5b5ed50ab9968aec0f36c8d55d57f2eb *R/package_skeleton.R
44ffd80d418eda1fac8ab6b235c14a33 *R/plot.R
7bfd512cb3cd0d8bdeffb695a8ddf50e *R/prevalence.R
c9edfb3d4e4e824f8173257e6d81f4c3 *R/print.R
ab613971cf44f90d76b55a080edc3ea2 *R/punchcard.R
e86e7138f001a69b35bb2dae8fd4dc49 *R/run.R
e4a24eb3088f77999c1946382587e2bc *R/run_outer.R
c3fd95374bd35d7a370b5ea72091b7dd *R/trajectory.R
26b681ef6ca0397867645abef6144c50 *README.md
2ea7b5eb5f67e66e5bce10cbe63e021d *build/vignette.rds
2f827bf880da06156f16b13a6d1652bc *cleanup
87a88dbe3610b7b7dc36192c6126eed4 *cleanup.win
b12a4a6184252907ae4da8d0300f10c6 *configure
cbe226ac3acd46e4c0cc17b81fc64143 *configure.ac
e246b4ebc994e29beffef77ac784b12b *configure.win
92d07847d90e0c2a505f41140889d1dc *data/events_SISe3.rda
ff4c69bfaa0057b4469c8784f825f329 *data/nodes.rda
25fd46ad094359f08eb7c3678455b515 *data/u0_SISe3.rda
b02e5cd1ef2d8a43b24c8ad1b7716bfd *inst/CITATION
3915e189f38744671620825ab093cd77 *inst/doc/SimInf.R
a04de55cd5580f11e1886e28c7277aff *inst/doc/SimInf.Rnw
3563f02bc3c6795e46460a4669215dc4 *inst/doc/SimInf.pdf
9a86561985cd6944791b1f74187f0e57 *inst/include/SimInf.h
73f63cfb00c6d0325030949da8bdcd04 *man/C_code.Rd
dfd62ca59457ada5b99848d5c3118c4c *man/Nn.Rd
a47d292df203301af2694a26495d17e3 *man/SEIR-class.Rd
383f6328c264d4a4b2ee1a757303d746 *man/SEIR.Rd
1231685cf10b9f54a2538741191d85dd *man/SIR-class.Rd
b2955ea31ec7e01f23758354a86b743a *man/SIR.Rd
b3bb210d009dffbab40d9265d331cf4b *man/SISe-class.Rd
5d4b828a7548bd794ecc80e444e4b87a *man/SISe.Rd
28f77edd90ea2f6521d42f2eb9ea850a *man/SISe3-class.Rd
398007604af30d423137b87fdec987d8 *man/SISe3.Rd
3df212b9db57c4ca3da276d308dd23bc *man/SISe3_sp-class.Rd
337d07927dd599d62c869b382513cf85 *man/SISe3_sp.Rd
19234ba062b5b60a4b60f90453581201 *man/SISe_sp-class.Rd
bc99abd8b1ec7a52c9f09df38b6c0ef9 *man/SISe_sp.Rd
1a20555de9fc0bce4f3e09c3eee0a004 *man/SimInf.Rd
5da00d9ab08e722c686bba487b89caf7 *man/SimInf_events-class.Rd
bf77d05f90fee678dfedf50734df34a8 *man/SimInf_events.Rd
fc5d961c8fb9773d4e8aed658dd8742b *man/SimInf_model-class.Rd
062e8e4c6999235377bc110668f56e29 *man/SimInf_model.Rd
aa26f99766b8388472299d3c9ecd9b87 *man/boxplot-SimInf_model-method.Rd
22c473c91254da349a81a03aefc3940a *man/distance_matrix.Rd
d1724b8c957e47d4ebaa91cf344b04b0 *man/events.Rd
2be552c2052eedda595513064afade6f *man/events_SEIR.Rd
b484e831bf1538b319c2a458a766487e *man/events_SIR.Rd
f69870d8315d647f6f9c374ac808fecd *man/events_SISe.Rd
9d10ffe89c8c151e07ecf61be296e245 *man/events_SISe3.Rd
824aeb95f7c9e329c9649a2dccf8354e *man/gdata-set.Rd
6b15f2851cf5f87388471e37bd1886f5 *man/gdata.Rd
2b6370bbad4e79f1a73d66dad08718ed *man/indegree.Rd
f606091b079ab4672d456d4dbd1df17c *man/ldata.Rd
862652c41839069bc616a9c41250b0ae *man/mparse.Rd
077a84ca81336942b6512248bb021c6a *man/nodes.Rd
11d8ec84aa4dd0b59b4f25f4d49c5426 *man/outdegree.Rd
d6e2633ae160d3a610508a455b697f27 *man/package_skeleton.Rd
0dd514fa725f3eca5444c7a56d9b2952 *man/pairs-SimInf_model-method.Rd
fcef9eae831b2fffa83c31e094623c68 *man/plot-SimInf_events-method.Rd
246eb67ee6241d0e13f4a77bff7161ad *man/plot.Rd
7a108d803f9c4a3caac84043b4328ee2 *man/prevalence.Rd
cd8a227351ec3901eef8964308ae3fea *man/punchcard-set.Rd
4be7f60f5e8f72aebd2fcde6f69cdf7f *man/run.Rd
2fe799ad5d321522091f832bcd1d1d0b *man/run_outer.Rd
3015980b4821819d1683656be2cd36c5 *man/select_matrix-set.Rd
6687a719b987b3c13c5ef788724c7d95 *man/select_matrix.Rd
23c1a3829c042740fb2dd295ca3d1307 *man/shift_matrix-set.Rd
1e9036e65f7380da6b9c9927f457b940 *man/shift_matrix.Rd
cc9bbcff1f36126cd6cdb36e984bf12f *man/show-SimInf_events-method.Rd
f184e10b8ed39a2d663badf60092c54b *man/show-SimInf_model-method.Rd
96cd307f08b5ab3902ff0004db9b558d *man/summary-SimInf_events-method.Rd
c0431cc5cdf0a014be2e57da787c50c9 *man/summary-SimInf_model-method.Rd
1012d4ac3ff2b3687a8b09cc75b82390 *man/trajectory.Rd
572ade3d0e38d221c4c895c79b4d5048 *man/u0_SEIR.Rd
b08fde9ff563f7b5aaa088dd51191672 *man/u0_SIR.Rd
af0ae4636b9ed0d20346a052ccdafe1e *man/u0_SISe.Rd
734766430e758ac27a6355b2cfcb26a5 *man/u0_SISe3.Rd
1053681c7de82592a72c9c727f115dce *src/Makevars.in
7bd4045c0024660d33649beb04fec303 *src/Makevars.win
f6e115cb9c9d3f43b43c0b7c0b6055ad *src/SimInf.c
9a86561985cd6944791b1f74187f0e57 *src/SimInf.h
68e5b2eaaa218b89b9d3a9e48af09b3b *src/init.c
b492451049df281927610f4047431202 *src/misc/SimInf_arg.c
a75bbfeeb516828d1493496cd4d7de0b *src/misc/SimInf_arg.h
9090d5ae6241ed85b025c33df416366c *src/misc/SimInf_forward_euler_linear_decay.c
7ec4302c9bbec147c3d37537815ba339 *src/misc/SimInf_forward_euler_linear_decay.h
3184ca6b20f9dcf357a74e51fe73c706 *src/misc/SimInf_ldata.c
acd5a1ffa85187b5d79a334539734d29 *src/misc/SimInf_local_spread.c
ea87429a2a97a2a715f4a505d38c4194 *src/misc/SimInf_local_spread.h
bd5575388c2d229bef8b921941c123d8 *src/misc/binheap.c
c8ca0fc44d539f89267da60825eecb28 *src/misc/binheap.h
6b3b53f156856e984beb8e4bcf0d19f6 *src/models/SEIR.c
af882bbed065025b35f09596ef148940 *src/models/SIR.c
3dfb0d5e4499f85b5f6bfdc1227c2a00 *src/models/SISe.c
536a215c38fb2fa5d2bc763d53d22a8f *src/models/SISe3.c
fe729fc8afc2f4c5c82a9cef77d6914a *src/models/SISe3_sp.c
01c5776e5f01d0c5d10421417ac594b8 *src/models/SISe_sp.c
508f7c43938d83467538cced646302ed *src/solvers/SimInf_solver.c
a74f81cda1729cd0226205e2eab71189 *src/solvers/SimInf_solver.h
7c9cd1e07dd6e29ab45c964c402d0682 *src/solvers/aem/SimInf_solver_aem.c
8293b28e2712ca5f57f37afa0cba41f8 *src/solvers/aem/SimInf_solver_aem.h
5683514edd18c8089bc059ed3b5a9bdc *src/solvers/kvec.h
e293f5434dcd0a7e215b1f18fe02e22f *src/solvers/ssm/SimInf_solver_ssm.c
16522e36b3172eb712d7571a886142ab *src/solvers/ssm/SimInf_solver_ssm.h
230d99f7a8c8a0b12c12b1e796cbd2cc *tests/SEIR.R
739885852b11e69e0553923657494d51 *tests/SIR.R
bc79db15a0495b4547193b482008ebe2 *tests/SISe.R
6685265c867f82fd6c6305c638189fd7 *tests/SISe3.R
9086838f7368896e073ed5409e9b612b *tests/SISe3_sp.R
cc69ccdf2ffb16bef2eca3565cbccc9e *tests/SISe_sp.R
5c21b538480d0158119a6826552731d2 *tests/SimInf.R
0b5721cf35b5b8eeba9bf4603b3ef797 *tests/SimInf_events.R
ff8f69aa2e115a4d11f1179530b52302 *tests/SimInf_model.R
90b5e7859d4c264cd7c3b8f6bce1b1c7 *tests/ldata_sp.R
943a71acc371a94e9aeec49a462e7efb *tests/measures.R
e2b0603ebd9a7d4b72dbab3b05edcf77 *tests/mparse.R
f8998146ce1eb3ce7acbc72a3f735085 *tests/package_skeleton.R
94a775bf9cf7e786f44e14f32d2d9b8f *tests/phi.R
088157a74a2d1f2c3c3fb676d8a13f13 *tests/prevalence.R
cf862f6a4ebd0add2f88c2fb9e8bdfaa *tests/punchcard.R
d200514f5b09b911359718c0985558b8 *tests/run_outer.R
9de61f1de4aaa3db7510b6190b86cdc1 *tests/sample_select.R
93bfc062897aa01cb4eff9ec7a3ed464 *tests/solver_aem.R
a04de55cd5580f11e1886e28c7277aff *vignettes/SimInf.Rnw
d8c3bb0f406a2d2031d7ef9b42943953 *vignettes/SimInf.bib
5c04c8b8a805c78e452c7b7e9c23479e *vignettes/img/SISe_sp-prevalence.pdf
79dda74236a5213b9c0f36df73846ae8 *vignettes/img/enter.pdf
8e4592483c76825ee1f56177845973f5 *vignettes/img/exit.pdf
fb2a52d0e7f02a565aac0934eee1cb69 *vignettes/img/external-shift.pdf
ca278f60569a51c96a4a1fd11f2950fd *vignettes/img/external.pdf
186c3113fc6036f653ccdb2eb15d6ab4 *vignettes/img/internal.pdf
51032abc3157d6e606a9445a6a0df938 *vignettes/img/mparse-epicurve.pdf
cf55ff8869ea41f4364197f167a09ce7 *vignettes/img/overview.pdf
225aac95467bc4a8366bb1b19baab2f1 *vignettes/img/predator-prey.png
5a2c02478802a3e26064b3198b2d539f *vignettes/img/temporal-network.pdf
