eb1ff919bb81a707ac2d41e0f4d39f3a *DESCRIPTION
228040580835f6d8de51a64a5f5b5eb8 *NAMESPACE
dd7b74a89653ceb34b4c88f2296bd3d4 *NEWS.md
38c1f6ff824e70437bd83e2f7daee48d *R/SEIR.R
bb0b55db1f46eec7d9f477a40aec9086 *R/SIR.R
7e22f6de4506b67f1afc79d16559cc0b *R/SISe.R
332c79d8cd403081a46d692f2d72c094 *R/SISe3.R
cbe39a06fa540e3489348c00e340b0ba *R/SISe3_sp.R
cd03d506799f043e2e3e27282fe03c23 *R/SISe_sp.R
e4a8a444bb3568803ff6c069faf7423c *R/SimInf.R
cae2e2b155fcda8b87d2851153943874 *R/SimInf_events.R
f66bcf0450af559adb75c8caab216780 *R/SimInf_model.R
8a45674a49842f61c076bf123e3597ab *R/check_arguments.R
f94529d199f50bd756a2b2af768ab2fd *R/degree.R
03ad431588fed81e892f87467ae37c43 *R/distance.R
b7babf0ace10284edc7ddadaf881b7fc *R/mparse.R
7e7cda3cce4181d4a51b218305c3af9b *R/openmp.R
ffcb26c87b204c52d2a5d7d989f8f8ed *R/package_skeleton.R
370277adcc8ae04b2440c5b74129cb6b *R/plot.R
2349b04614b60ea25f6b04d8fe1eb8f9 *R/prevalence.R
5a4c1b333381f98323211d0885e032e8 *R/print.R
643da9c3a594d222e9dc5d9d2c3953de *R/punchcard.R
66c49515baf84c257880d625220ceafc *R/run.R
1382e04cddcf862e05535ceb786859e6 *R/run_outer.R
1bb372e81171ed79a2d4470b70014267 *R/trajectory.R
ac837bc95c91815d62f15ecf674a0054 *README.md
9933c27be3ba9686a41ea85e855461dc *build/vignette.rds
2f827bf880da06156f16b13a6d1652bc *cleanup
87a88dbe3610b7b7dc36192c6126eed4 *cleanup.win
b12a4a6184252907ae4da8d0300f10c6 *configure
213fe4e0c88ea6223bdb70709074b813 *configure.ac
e246b4ebc994e29beffef77ac784b12b *configure.win
92d07847d90e0c2a505f41140889d1dc *data/events_SISe3.rda
00a854fbeab1b973edd5ca564af9d03a *data/nodes.rda
25fd46ad094359f08eb7c3678455b515 *data/u0_SISe3.rda
b02e5cd1ef2d8a43b24c8ad1b7716bfd *inst/CITATION
33ec3be9581e342324abfc4a8134a1fa *inst/doc/SimInf.R
58fa6fa6f6149e0d1826f1c2cb8b00f5 *inst/doc/SimInf.Rnw
389bbebe5d6ca6f519e84ba3de7fc774 *inst/doc/SimInf.pdf
bfe4d47e88ede6fba32d87582e0676e8 *inst/include/SimInf.h
73f63cfb00c6d0325030949da8bdcd04 *man/C_code.Rd
dfd62ca59457ada5b99848d5c3118c4c *man/Nn.Rd
a47d292df203301af2694a26495d17e3 *man/SEIR-class.Rd
2a305a1e4ffb138cd2adb91746de8a9b *man/SEIR.Rd
a6ae90b9e763a7c46741007ad9adc29e *man/SIR-class.Rd
fffdb57b3c5aa01a72ad27117479a47c *man/SIR.Rd
b3bb210d009dffbab40d9265d331cf4b *man/SISe-class.Rd
3d7913ba270d2365b9f6c3659a1f7cbe *man/SISe.Rd
28f77edd90ea2f6521d42f2eb9ea850a *man/SISe3-class.Rd
b9fc644b47efdc9962f73f99c3d688de *man/SISe3.Rd
3df212b9db57c4ca3da276d308dd23bc *man/SISe3_sp-class.Rd
13b6e1b1aeb0c79f4bbc06e52912353a *man/SISe3_sp.Rd
19234ba062b5b60a4b60f90453581201 *man/SISe_sp-class.Rd
0c312e067f588bff38558da2cc7d60aa *man/SISe_sp.Rd
da495176d5ced70f05809b85929ac1be *man/SimInf.Rd
ea86142f33741ef6168e5838f494a57e *man/SimInf_events-class.Rd
bf77d05f90fee678dfedf50734df34a8 *man/SimInf_events.Rd
15631c81e41c1983c27cdf658f7901f3 *man/SimInf_model-class.Rd
66980b2bf60c612105862a586235c17e *man/SimInf_model.Rd
bc85e3bd43726e229bfcbdf93aa1a3e2 *man/as.data.frame.SimInf_events.Rd
0ea383430bcfb7922ebd7669de2cfe1e *man/boxplot-SimInf_model-method.Rd
22c473c91254da349a81a03aefc3940a *man/distance_matrix.Rd
d1724b8c957e47d4ebaa91cf344b04b0 *man/events.Rd
f1ebe44b436349c2f6b9a8548d74cf43 *man/events_SEIR.Rd
e96601c58a458cbdfd43bb57936e344d *man/events_SIR.Rd
53aecd79a6d855fd15788eae3ff31ba3 *man/events_SISe.Rd
6f95fc6a473aa51124422f7efcdc5f6a *man/events_SISe3.Rd
824aeb95f7c9e329c9649a2dccf8354e *man/gdata-set.Rd
6b15f2851cf5f87388471e37bd1886f5 *man/gdata.Rd
2b6370bbad4e79f1a73d66dad08718ed *man/indegree.Rd
f606091b079ab4672d456d4dbd1df17c *man/ldata.Rd
a67a892cc87c875c8fcaad954367183a *man/mparse.Rd
4359b77c87c0d6e2c90e296521aef5a2 *man/nodes.Rd
11d8ec84aa4dd0b59b4f25f4d49c5426 *man/outdegree.Rd
45214628f3076febd5d1918dc338b26f *man/package_skeleton.Rd
25d9c5d76fde8b663e7f33d88064de40 *man/pairs-SimInf_model-method.Rd
be9e6bb7cab4274d8d72061a80d6c21b *man/plot-SimInf_events-method.Rd
40596925acb13b2720d537f5f156d03d *man/plot.Rd
840b3cbbe4cfe8e056d50bb1311699b5 *man/prevalence.Rd
17db596c21df46ac2d334c8b9c853bff *man/punchcard-set.Rd
24f2897d010a4c2bf4ee55137879cc6e *man/run.Rd
553efbddf1e5361c16d80f7714228f74 *man/run_outer.Rd
3015980b4821819d1683656be2cd36c5 *man/select_matrix-set.Rd
6687a719b987b3c13c5ef788724c7d95 *man/select_matrix.Rd
f0bec30cdcd8cd15f6a3bb1a96333ba0 *man/set_num_threads.Rd
23c1a3829c042740fb2dd295ca3d1307 *man/shift_matrix-set.Rd
1e9036e65f7380da6b9c9927f457b940 *man/shift_matrix.Rd
2c73ad8887f2c96d62b6d4e095e2199a *man/show-SimInf_events-method.Rd
257388de051bf06c8c278309eb287205 *man/show-SimInf_model-method.Rd
493bc971311b4a9604774de599eaeedc *man/summary-SimInf_events-method.Rd
31f50a358ec327c80d1ff9e10040f0a5 *man/summary-SimInf_model-method.Rd
33f1d8fb29d45dfc0c169c667f06d2e1 *man/trajectory.Rd
68a0a07e0d46c3128cc255405511d289 *man/u0_SEIR.Rd
d1ff7f76cbeb527a14bcd3e56e615535 *man/u0_SIR.Rd
c5b8577b739ff9b2aa577c3bff48031b *man/u0_SISe.Rd
f243d79950a7d7bb23259fbd5a532503 *man/u0_SISe3.Rd
3ec8d7032d4be09a561047c1799eddd0 *src/Makevars.in
aa14589a310cb7fcf30b35267cd23b86 *src/Makevars.win
071d808e65d44bfd035e8d85775b42c3 *src/SimInf.c
bfe4d47e88ede6fba32d87582e0676e8 *src/SimInf.h
98915cc7043a008163db11be70e594a0 *src/init.c
914f7e2ca6078ffc9dc1e6b616f0aef6 *src/misc/SimInf_arg.c
980d39e8c37ed24f788fa21d2b6fe430 *src/misc/SimInf_arg.h
467ee3c69216073747d30408fd45a30a *src/misc/SimInf_forward_euler_linear_decay.c
fd2e63930643dbb08acffcc39cc8cdb2 *src/misc/SimInf_forward_euler_linear_decay.h
c9b6d4ac3dfe19861b5e76d7b9b69b80 *src/misc/SimInf_ldata.c
ff1d6deb75c4c21dd5948451e23090ec *src/misc/SimInf_local_spread.c
4c37f5131a072810c885848cf4a3abb9 *src/misc/SimInf_local_spread.h
0defb883e7426357bd413876b5dbd685 *src/misc/SimInf_openmp.c
d48c5974b6d7ca4322cadda02e69b18a *src/misc/SimInf_openmp.h
af3b52e097d8f2b325f2eea875c8f773 *src/misc/SimInf_trajectory.c
bd5575388c2d229bef8b921941c123d8 *src/misc/binheap.c
c8ca0fc44d539f89267da60825eecb28 *src/misc/binheap.h
d235e861d3bfd9c49f9eb431713ab267 *src/misc/kbtree.h
5683514edd18c8089bc059ed3b5a9bdc *src/misc/kvec.h
b6f964a6a54a0916a53c2892c4cab597 *src/models/SEIR.c
b03c315fc390fbf7787bc3f652175808 *src/models/SIR.c
b71dac05156bae1ef8bebc70a0b3a12c *src/models/SISe.c
2562124bfb5c243df5b48e43e2edb0fd *src/models/SISe3.c
1e18719be12757e0fdcdf5b422a26e64 *src/models/SISe3_sp.c
ccdde912fca7af2b5f40074ed18d9014 *src/models/SISe_sp.c
4bb8651439a241066e136ac19c60767c *src/solvers/SimInf_solver.c
a56e97261caa8bb248595bd1d63f2b3e *src/solvers/SimInf_solver.h
d2943fc5eac2f363ddc2aff38a1dd930 *src/solvers/aem/SimInf_solver_aem.c
9c8d0734a8a26354362dcba682197fa3 *src/solvers/aem/SimInf_solver_aem.h
dcd3021c59aca39546fc28f5f7928ca9 *src/solvers/ssm/SimInf_solver_ssm.c
cc80697c3f0a2c065455cd049c1c2e60 *src/solvers/ssm/SimInf_solver_ssm.h
5aabd94f0b390fc3d5ec50ee7e9d9447 *tests/SEIR.R
cf541aa81234cbc6cc6116c983f5c1dc *tests/SIR.R
1a372baa997baae47502091b396f30ff *tests/SISe.R
6859c781965485b963923ec354c628dc *tests/SISe3.R
a2e3ea598bcd08966310d9d8c32bfa39 *tests/SISe3_sp.R
8df667bd669311df544b41a326b38ed4 *tests/SISe_sp.R
07172319395588008cdfb5933e3172fa *tests/SimInf.R
0ac0336f8fb924fdee5ed9eee6e2ea38 *tests/SimInf_events.R
a664b726120292fcdf7acecf52598e8e *tests/SimInf_model.R
e2d42c4d36bac01c326dbb8f32f8ced9 *tests/ldata_sp.R
59277f3004e3b128f8488c1d0ae34ad3 *tests/measures.R
0c84396925cc5e42e46659b499de326e *tests/mparse.R
7b1dfdfad68ea8cd8bad7f99b5e6b1da *tests/package_skeleton.R
3cbb57967933de40d85be7e4569b95e3 *tests/phi.R
038e57cf80c7d8175cad79c7c7351e1e *tests/prevalence.R
20e6e9725bd33a60f547ed6503698fbb *tests/punchcard.R
07d8c82052d8007632a12e2d46c31af8 *tests/run_outer.R
d5a4fc3e960b82e6a34d91d1f8969616 *tests/sample_select.R
a5f112389120cbed27034ef952982cc1 *tests/solver_aem.R
801403e255fc6cb012ff35d693061bd5 *tests/util/check.R
58fa6fa6f6149e0d1826f1c2cb8b00f5 *vignettes/SimInf.Rnw
d2392923a7b2d0a91f25fb51d6f7c22a *vignettes/SimInf.bib
5c04c8b8a805c78e452c7b7e9c23479e *vignettes/img/SISe_sp-prevalence.pdf
79dda74236a5213b9c0f36df73846ae8 *vignettes/img/enter.pdf
8e4592483c76825ee1f56177845973f5 *vignettes/img/exit.pdf
fb2a52d0e7f02a565aac0934eee1cb69 *vignettes/img/external-shift.pdf
ca278f60569a51c96a4a1fd11f2950fd *vignettes/img/external.pdf
186c3113fc6036f653ccdb2eb15d6ab4 *vignettes/img/internal.pdf
51032abc3157d6e606a9445a6a0df938 *vignettes/img/mparse-epicurve.pdf
cf55ff8869ea41f4364197f167a09ce7 *vignettes/img/overview.pdf
225aac95467bc4a8366bb1b19baab2f1 *vignettes/img/predator-prey.png
5a2c02478802a3e26064b3198b2d539f *vignettes/img/temporal-network.pdf
