63ba088e09d61bb05566a0e09ff684f3 *DESCRIPTION
709a815a15e698c6975cae3a720abe1f *NAMESPACE
fcacdd86d3b1f9a14fab1fddf2175a38 *NEWS.md
3217a35b0c9fd2e70d4c8b9925b32733 *R/C-generator.R
0323c21b2a6f98f784c7cb6c386d5e03 *R/SEIR.R
312621eda37664fd4072eff0d4aeac77 *R/SIR.R
0ec8f8b83427b6579ba93081b9bc6b18 *R/SISe.R
a731bbb9e5504171fd428cc3e44571e5 *R/SISe3.R
8c68c4e0592925caee52b6dd6636fbd0 *R/SISe3_sp.R
6683b0a56c3c296843b1f8f96bc16dd8 *R/SISe_sp.R
c7cdd8ee3245ca25f8e967bf2dd43f7b *R/SimInf.R
efa73141b0868bd3f5351a8af2f7456e *R/SimInf_events.R
f4a275b748ec0a6b1bf399b9571bc3ef *R/SimInf_model.R
c7212a5787490638d970af381263eed8 *R/check_arguments.R
cbc38d0528167e2feb04510a523c03a7 *R/degree.R
03ad431588fed81e892f87467ae37c43 *R/distance.R
d3f1dd90e877a58ceab294fabd59c123 *R/init.R
7eb702c4308ed1351472d5d21db23431 *R/match_compartments.R
6a0f9755486eb1660765971b22753d75 *R/mparse.R
b5df31ad780a8cf38ef3ec6259d58730 *R/n.R
7e7cda3cce4181d4a51b218305c3af9b *R/openmp.R
e723d81df6ea8d3258631decf1ca6d97 *R/package_skeleton.R
2cbc432d9fd67bee28600e20dfc0535d *R/plot.R
24d964f2e2142eb410806a16fb429375 *R/prevalence.R
06b808b7f9e029c71cefed7db61f57f5 *R/print.R
f2bb00f72acbe9277586b74b7687f259 *R/priors.R
a54ef1339e54c3c5b69ffb045a49caaa *R/punchcard.R
6aec0a9c3171b77a18b2c75e5e1e8588 *R/run.R
79ae1b859c3551990b288158909aea80 *R/trajectory.R
359ab900af611b87de9f2a58c11982af *R/valid.R
beb1d6d88dbc77e8919c6cd2fc4a52f0 *README.md
63a847da93331b488de0562c65305576 *build/vignette.rds
2f827bf880da06156f16b13a6d1652bc *cleanup
87a88dbe3610b7b7dc36192c6126eed4 *cleanup.win
0a39f52e13f2c380041f57d554db3984 *configure
7c3ec1acff4d13ca92b56c3e6c5b76e6 *configure.ac
f1750ab7fa66b11bf9e6ac531b103b7d *configure.win
92d07847d90e0c2a505f41140889d1dc *data/events_SISe3.rda
00a854fbeab1b973edd5ca564af9d03a *data/nodes.rda
25fd46ad094359f08eb7c3678455b515 *data/u0_SISe3.rda
b02e5cd1ef2d8a43b24c8ad1b7716bfd *inst/CITATION
3e6107d446ac982c4f01755ab698da53 *inst/doc/SimInf.R
88e0dededa99561261be2043a7fdf964 *inst/doc/SimInf.Rnw
a029845dc8e042cd081d04d3743b416d *inst/doc/SimInf.pdf
4f0fc97ee6b5f3ffab8ef332bc0c33d8 *inst/include/SimInf.h
4443cbef99db9b3e614aed546f105bcc *man/C_code.Rd
a47d292df203301af2694a26495d17e3 *man/SEIR-class.Rd
2d8c8387de808ad4f7ed4f081fab17b7 *man/SEIR.Rd
a6ae90b9e763a7c46741007ad9adc29e *man/SIR-class.Rd
724faa5ee021fc33336bfabdd29d9ad5 *man/SIR.Rd
b3bb210d009dffbab40d9265d331cf4b *man/SISe-class.Rd
3d7913ba270d2365b9f6c3659a1f7cbe *man/SISe.Rd
28f77edd90ea2f6521d42f2eb9ea850a *man/SISe3-class.Rd
b9fc644b47efdc9962f73f99c3d688de *man/SISe3.Rd
3df212b9db57c4ca3da276d308dd23bc *man/SISe3_sp-class.Rd
13b6e1b1aeb0c79f4bbc06e52912353a *man/SISe3_sp.Rd
19234ba062b5b60a4b60f90453581201 *man/SISe_sp-class.Rd
0c312e067f588bff38558da2cc7d60aa *man/SISe_sp.Rd
da495176d5ced70f05809b85929ac1be *man/SimInf.Rd
891a84571aaa8d434fbf8edc0fdc9c33 *man/SimInf_events-class.Rd
04e1bd10cd8f916b3f04ed8a76805836 *man/SimInf_events.Rd
90bc1e638182119ef7abadaf5e11e955 *man/SimInf_model-class.Rd
66980b2bf60c612105862a586235c17e *man/SimInf_model.Rd
bc85e3bd43726e229bfcbdf93aa1a3e2 *man/as.data.frame.SimInf_events.Rd
d663db0c87a12fd7b2654c3e564b0d9e *man/boxplot-SimInf_model-method.Rd
22c473c91254da349a81a03aefc3940a *man/distance_matrix.Rd
d1724b8c957e47d4ebaa91cf344b04b0 *man/events.Rd
f1ebe44b436349c2f6b9a8548d74cf43 *man/events_SEIR.Rd
e96601c58a458cbdfd43bb57936e344d *man/events_SIR.Rd
53aecd79a6d855fd15788eae3ff31ba3 *man/events_SISe.Rd
8b21e925b1540e917bb13860ce55fd6e *man/events_SISe3.Rd
f09d2e227827d312331c664dbae73326 *man/examples/abc.R
824aeb95f7c9e329c9649a2dccf8354e *man/gdata-set.Rd
6b15f2851cf5f87388471e37bd1886f5 *man/gdata.Rd
2b6370bbad4e79f1a73d66dad08718ed *man/indegree.Rd
f606091b079ab4672d456d4dbd1df17c *man/ldata.Rd
a67a892cc87c875c8fcaad954367183a *man/mparse.Rd
c289745de34983ac3a24af553c045360 *man/n_nodes.Rd
f8f0e98be3735fdf7a5effdf4d41d99c *man/nodes.Rd
11d8ec84aa4dd0b59b4f25f4d49c5426 *man/outdegree.Rd
fa46d5afacd997f2cd8391cea736e8e2 *man/package_skeleton.Rd
bee488bbf086a93b2722e3d33823cefb *man/pairs-SimInf_model-method.Rd
be9e6bb7cab4274d8d72061a80d6c21b *man/plot-SimInf_events-method.Rd
40596925acb13b2720d537f5f156d03d *man/plot.Rd
3661b334081795ccafbc71ac7871d127 *man/prevalence.Rd
17db596c21df46ac2d334c8b9c853bff *man/punchcard-set.Rd
14986a93e705d9f9f2765fc174896b2f *man/run.Rd
3015980b4821819d1683656be2cd36c5 *man/select_matrix-set.Rd
6687a719b987b3c13c5ef788724c7d95 *man/select_matrix.Rd
f0bec30cdcd8cd15f6a3bb1a96333ba0 *man/set_num_threads.Rd
23c1a3829c042740fb2dd295ca3d1307 *man/shift_matrix-set.Rd
1e9036e65f7380da6b9c9927f457b940 *man/shift_matrix.Rd
2c73ad8887f2c96d62b6d4e095e2199a *man/show-SimInf_events-method.Rd
257388de051bf06c8c278309eb287205 *man/show-SimInf_model-method.Rd
493bc971311b4a9604774de599eaeedc *man/summary-SimInf_events-method.Rd
31f50a358ec327c80d1ff9e10040f0a5 *man/summary-SimInf_model-method.Rd
8a5823bd1a8f0eb5d555147da5c459c2 *man/trajectory.Rd
68a0a07e0d46c3128cc255405511d289 *man/u0_SEIR.Rd
d1ff7f76cbeb527a14bcd3e56e615535 *man/u0_SIR.Rd
ab560cfa4da43284f3d3e6b4e307a0ed *man/u0_SISe.Rd
e944b4bef27d4fd9740d24027cdda015 *man/u0_SISe3.Rd
f54a107417da77c4378eed9dde321918 *src/Makevars.in
a437faccd1342c4247be7a01dede67ba *src/Makevars.win
15e9813224d748f5eb09b5fcde7f632c *src/SimInf-win.def
59ee255e4189ae27852b407033ad0731 *src/SimInf.c
4f0fc97ee6b5f3ffab8ef332bc0c33d8 *src/SimInf.h
528f60db030c5fa5d0376180aadc16b8 *src/init.c
72af1b1e41bf21e7b22f388a0e651be9 *src/misc/SimInf_arg.c
836d826459e79d7f527d886d54c304c1 *src/misc/SimInf_arg.h
66184f8b02b0539cfc1cd5dff49743be *src/misc/SimInf_forward_euler_linear_decay.c
77d20443391f53de9dff65a981ab8b9c *src/misc/SimInf_ldata.c
bc5364043d49e1a8bd83eaa513dfea00 *src/misc/SimInf_local_spread.c
1a04f4e289d1356c21023749599e4faf *src/misc/SimInf_openmp.c
d48c5974b6d7ca4322cadda02e69b18a *src/misc/SimInf_openmp.h
aafefbf59ec9979fe5d5e44ba9893c31 *src/misc/SimInf_trajectory.c
5aca36a50c420debea0694c70181867f *src/misc/binheap.c
c8ca0fc44d539f89267da60825eecb28 *src/misc/binheap.h
5683514edd18c8089bc059ed3b5a9bdc *src/misc/kvec.h
e79672c34ae6b099c5e75e168a04e523 *src/models/SEIR.c
4dfdf5784ea5c5079b09f7e09c467fa5 *src/models/SIR.c
3f3d3704255751bbd2d71078f855c377 *src/models/SISe.c
581efd4f1432c40058aa819948114e01 *src/models/SISe3.c
94ec1b8ccba0e2083080818b7753d269 *src/models/SISe3_sp.c
dd2cd24d38487b2841e337e184157055 *src/models/SISe_sp.c
c3cdafce2c1ca3bb6aa86f2d61e65ed7 *src/solvers/SimInf_solver.c
d500f7cd411aeeb505e8dfc5fc3d3dd6 *src/solvers/SimInf_solver.h
15243e3f2264893d6f0acb4d2520a94e *src/solvers/aem/SimInf_solver_aem.c
9c8d0734a8a26354362dcba682197fa3 *src/solvers/aem/SimInf_solver_aem.h
da5e26592d4ac3f64077a9cf8881c191 *src/solvers/ssm/SimInf_solver_ssm.c
cc80697c3f0a2c065455cd049c1c2e60 *src/solvers/ssm/SimInf_solver_ssm.h
529a8ec2a82788ec6d06502fdc6f6f97 *tests/SEIR.R
2f5e6fe8d7724c91ed2cefccad8e7120 *tests/SIR.R
d791dc5124ef24d6106928a42b166cbd *tests/SISe.R
3060aa65a85050dbf9c3dd4e62544e18 *tests/SISe3.R
93abb9ea0842e40ff8c8dee2b08e0114 *tests/SISe3_sp.R
87edf05c577276ba62f7f3750fb7312d *tests/SISe_sp.R
5cc1f327fcf5a4f44ba40cc612be175a *tests/SimInf.R
b213cfac6773d0635bfda25aa59d4809 *tests/SimInf_events.R
dce863ec1541344ce14eb5214b47d62d *tests/SimInf_model.R
e2d42c4d36bac01c326dbb8f32f8ced9 *tests/ldata_sp.R
581e8871d51ba9cf085ccfcd25dc1568 *tests/match_compartments.R
09150c5a545dce357c3b121ec0a9745f *tests/measures.R
deebde597045a4406e5d66ba8c3b16aa *tests/mparse.R
8d26e2aa6e14d4ba3d33beaab4fafd0d *tests/package_skeleton.R
6c6fef994076645d13bb610cd9b8fcf0 *tests/phi.R
17a517f991b30a5541e924b777d79022 *tests/prevalence.R
c672d52ecc39885e7e4a0fa153c13573 *tests/priors.R
c730cf3944fdcaaa1eb4e383cadd92f6 *tests/punchcard.R
b66ebe605de4d08ee86f712b2bc568df *tests/sample_select.R
2d5628e8d41d298a76a9d6bc2166607a *tests/solver_aem.R
801403e255fc6cb012ff35d693061bd5 *tests/util/check.R
88e0dededa99561261be2043a7fdf964 *vignettes/SimInf.Rnw
41eb7423ebd0ac4304da625dd6377357 *vignettes/SimInf.bib
5c04c8b8a805c78e452c7b7e9c23479e *vignettes/img/SISe_sp-prevalence.pdf
79dda74236a5213b9c0f36df73846ae8 *vignettes/img/enter.pdf
8e4592483c76825ee1f56177845973f5 *vignettes/img/exit.pdf
fb2a52d0e7f02a565aac0934eee1cb69 *vignettes/img/external-shift.pdf
ca278f60569a51c96a4a1fd11f2950fd *vignettes/img/external.pdf
186c3113fc6036f653ccdb2eb15d6ab4 *vignettes/img/internal.pdf
51032abc3157d6e606a9445a6a0df938 *vignettes/img/mparse-epicurve.pdf
cf55ff8869ea41f4364197f167a09ce7 *vignettes/img/overview.pdf
225aac95467bc4a8366bb1b19baab2f1 *vignettes/img/predator-prey.png
5a2c02478802a3e26064b3198b2d539f *vignettes/img/temporal-network.pdf
