aa0a69b102b5629068099825b206c56e *DESCRIPTION
db65d746e9dab8af8a00ddf035f2f60a *NAMESPACE
d1fb2e6b84ac79475bd8b7bc9263209a *NEWS.md
771791428261c5d3660bd5a12ac6ec9a *R/C-generator.R
7f8cf624a6d202f0214c6603839fb1ca *R/SEIR.R
6870a136944b3fce43532bb8e5ad9746 *R/SIR.R
8296b649ee455a881d3911d796c01a89 *R/SIS.R
2b43766c4bf63f1322c99491f10a8f6b *R/SISe.R
5f3416efcd71aaa0efd74893da9cdde1 *R/SISe3.R
8c68c4e0592925caee52b6dd6636fbd0 *R/SISe3_sp.R
6683b0a56c3c296843b1f8f96bc16dd8 *R/SISe_sp.R
9932498db021cb2b68d58c96fa8041c8 *R/SimInf.R
41f9b66ce1c5ebeaf39cbaf5f746cc3e *R/SimInf_events.R
6658873b317a348b496b53cc6920f99b *R/SimInf_model.R
ec7f6c7313967917f612b121fb1ed9f6 *R/abc.R
9521f124039df77da3cf94ef63fa424c *R/abc_support.R
2cad996385b5c78a3228718142ffe8c6 *R/abc_support.R.in
9ff565a12a7b43bddc64bdd606ae175a *R/check_arguments.R
49e36faa950a9d5f6e8ca66ffbfa5a8a *R/classes.R
cbc38d0528167e2feb04510a523c03a7 *R/degree.R
b4db5ddeb9dc66003ac14979f8cbc6b8 *R/density_ratio.R
03ad431588fed81e892f87467ae37c43 *R/distance.R
f9e9e132d8c16bc8ef91bc7ca958d94b *R/distributions.R
ac365ebd0eca715828beac504e210157 *R/init.R
e8f025094dd8e39246fac460f13b3dcf *R/match_compartments.R
2c292608261de32bb86c76e8e592f54d *R/mparse.R
b5df31ad780a8cf38ef3ec6259d58730 *R/n.R
7e7cda3cce4181d4a51b218305c3af9b *R/openmp.R
853d7ffe91b5732c1ea1635644ef18b0 *R/package_skeleton.R
f83c00d1c553bd2e8628127cb894331d *R/pfilter.R
9043ec9f2298ac555316918b6e388b20 *R/plot.R
1ebc085f4461b376483456e4bf60cf49 *R/prevalence.R
06b808b7f9e029c71cefed7db61f57f5 *R/print.R
43ebb603aaa97f37e01a2bf8c8a1ede1 *R/punchcard.R
e942f9a4ba19b47ba460732083f884cd *R/run.R
7de17e3916790e56295ed5f7564cf9ab *R/trajectory.R
8841040165ac2d203163ef1dc1312e03 *R/update.R
b67ad9a6abc48ee2e672d76176311310 *R/valid.R
6b89e74807078693d73a96234c5e7259 *README.md
9a8b54eb3ab9affe54228ca82bb84012 *build/partial.rdb
9e7d4ac1508c26507f8e1e63bf9deee3 *build/vignette.rds
10d7c54922727e585af83c3509002458 *cleanup
c7e3e8ae4c16d4805f8e6807452d887a *configure
d44719c7767d517006a8926c4473b746 *configure.ac
92d07847d90e0c2a505f41140889d1dc *data/events_SISe3.rda
00a854fbeab1b973edd5ca564af9d03a *data/nodes.rda
e4cc4ca1a5ff459aaa9b3c9d42d6f1dd *data/u0_SISe3.rda
b02e5cd1ef2d8a43b24c8ad1b7716bfd *inst/CITATION
ed62cb8b5f75f88963fc01e60fd5b821 *inst/doc/SimInf.R
70a6af8c076f16ff4de00ee5e5f0d08f *inst/doc/SimInf.Rnw
65f15ee31be2f7f8749c2feeb6a7f288 *inst/doc/SimInf.pdf
e3c0604d3ea44855b095f4e708dd88cf *inst/doc/scheduled-events.R
89dd172404f773c497d584f79fb537ad *inst/doc/scheduled-events.Rmd
2bdc125e6bf75a9618d48c68ffc7f14e *inst/doc/scheduled-events.html
109b04fd770317b13a858f2da210d2f3 *inst/include/SimInf.h
4443cbef99db9b3e614aed546f105bcc *man/C_code.Rd
a47d292df203301af2694a26495d17e3 *man/SEIR-class.Rd
2d8c8387de808ad4f7ed4f081fab17b7 *man/SEIR.Rd
a69903467ff11d1a8c6fced3ab269f9a *man/SIR-class.Rd
724faa5ee021fc33336bfabdd29d9ad5 *man/SIR.Rd
57c19277a4e06ebce987502370fdb5bf *man/SIS-class.Rd
6790fc1b53fe12f3d8043c04d68c5032 *man/SIS.Rd
b3bb210d009dffbab40d9265d331cf4b *man/SISe-class.Rd
3d7913ba270d2365b9f6c3659a1f7cbe *man/SISe.Rd
28f77edd90ea2f6521d42f2eb9ea850a *man/SISe3-class.Rd
b9fc644b47efdc9962f73f99c3d688de *man/SISe3.Rd
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19234ba062b5b60a4b60f90453581201 *man/SISe_sp-class.Rd
0c312e067f588bff38558da2cc7d60aa *man/SISe_sp.Rd
4ade376b8350b5751f56a250c69dee69 *man/SimInf.Rd
761bd26c7307a81ba457379fb25e9559 *man/SimInf_abc-class.Rd
1e0d144d28ac3d7c04d55067d50b945b *man/SimInf_events-class.Rd
7380dcc57e31abec53d5aa8f4aa686a7 *man/SimInf_events.Rd
01cb92c321f9d67c98d0d04df3036756 *man/SimInf_model-class.Rd
66980b2bf60c612105862a586235c17e *man/SimInf_model.Rd
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ba7f391dee1e92b07cb3da7135e632f6 *man/abc.Rd
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e7cf244630e14975780f6e12340a03cf *man/as.data.frame.SimInf_events.Rd
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99267a16780db65c891ab01e2e7cebc6 *man/continue.Rd
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7abeab9d61e5c9322df2ba50990fef3d *man/events.Rd
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e96601c58a458cbdfd43bb57936e344d *man/events_SIR.Rd
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53aecd79a6d855fd15788eae3ff31ba3 *man/events_SISe.Rd
8b21e925b1540e917bb13860ce55fd6e *man/events_SISe3.Rd
6165130b2570a89d918bb6e0a78de1e2 *man/examples/abc.R
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c3f7e59e481ab9dcc49f74e5c7ac9309 *man/gdata.Rd
2b6370bbad4e79f1a73d66dad08718ed *man/indegree.Rd
4ee191fb508c129117d18794c7f00e0f *man/ldata.Rd
9c0cdc1aa5d8856ee8e5ab88ee9a6001 *man/logLik-SimInf_pfilter-method.Rd
370ce61014fb1f43c13723d6bbb38b24 *man/macros/citations.Rd
a67a892cc87c875c8fcaad954367183a *man/mparse.Rd
ea7312a828ac0ce1735d65ef3b0b8865 *man/n_generations.Rd
c289745de34983ac3a24af553c045360 *man/n_nodes.Rd
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11d8ec84aa4dd0b59b4f25f4d49c5426 *man/outdegree.Rd
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1df52695190975854bf006cbbf109389 *man/pfilter.Rd
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2c73ad8887f2c96d62b6d4e095e2199a *man/show-SimInf_events-method.Rd
257388de051bf06c8c278309eb287205 *man/show-SimInf_model-method.Rd
9424b1b549f56f8dbff8302b0a03eb89 *man/show-SimInf_pfilter-method.Rd
e92e4d977aa105dd36aface60027d210 *man/summary-SimInf_abc-method.Rd
493bc971311b4a9604774de599eaeedc *man/summary-SimInf_events-method.Rd
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7414d127685d2e17f033512d7261828f *man/summary-SimInf_pfilter-method.Rd
31288127f8643e8140bd7d30366ccd94 *man/trajectory-SimInf_model-method.Rd
4ecb09b13fc52be723f64e84b75a3e17 *man/trajectory-SimInf_pfilter-method.Rd
a50a6b7eee3f9faa9dcac7256b1c8890 *man/trajectory.Rd
9b8867a2cfc820d99ae9a1f198bf547c *man/u0-set.Rd
68a0a07e0d46c3128cc255405511d289 *man/u0_SEIR.Rd
d1ff7f76cbeb527a14bcd3e56e615535 *man/u0_SIR.Rd
617c42e3bc561e9fb77437ead5e22df1 *man/u0_SIS.Rd
22236f88e121c639bf1bf6af6ccb5fd9 *man/u0_SISe.Rd
666468d0c12feeb4d69b0e44b1ea20e9 *man/u0_SISe3.Rd
82823ed0745eb5b5ff6fbb43eff2cddc *man/v0-set.Rd
927315a5fcadb8ec7b16ec89fd13e32f *src/Makevars.in
05b28649c3f711fea01fad2e56bd8335 *src/Makevars.ucrt
21259f817035c222b4ac477069eb76e9 *src/Makevars.win
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72af1b1e41bf21e7b22f388a0e651be9 *src/misc/SimInf_arg.c
836d826459e79d7f527d886d54c304c1 *src/misc/SimInf_arg.h
4e7b4c687650e55e1b17ef7ecf3300a3 *src/misc/SimInf_clean_raw_events.c
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5aca36a50c420debea0694c70181867f *src/misc/binheap.c
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5683514edd18c8089bc059ed3b5a9bdc *src/misc/kvec.h
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4dfdf5784ea5c5079b09f7e09c467fa5 *src/models/SIR.c
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4e311ca41d8d208b0f2f7ed3a6e6d68f *tests/SIS.R
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1a739abe741670fc3602534597f4ef4f *tests/punchcard.R
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754991e91dea17d73c02024bfc15b78c *tests/util/check.R
876da2841839c09471a50cf76a404767 *tools/winlibs.R
70a6af8c076f16ff4de00ee5e5f0d08f *vignettes/SimInf.Rnw
41eb7423ebd0ac4304da625dd6377357 *vignettes/SimInf.bib
5c04c8b8a805c78e452c7b7e9c23479e *vignettes/img/SISe_sp-prevalence.pdf
79dda74236a5213b9c0f36df73846ae8 *vignettes/img/enter.pdf
8e4592483c76825ee1f56177845973f5 *vignettes/img/exit.pdf
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ca278f60569a51c96a4a1fd11f2950fd *vignettes/img/external.pdf
186c3113fc6036f653ccdb2eb15d6ab4 *vignettes/img/internal.pdf
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5a2c02478802a3e26064b3198b2d539f *vignettes/img/temporal-network.pdf
687cefa8bc0c59abc72e938648b6c485 *vignettes/img/temporal-network.svg
89dd172404f773c497d584f79fb537ad *vignettes/scheduled-events.Rmd
