eee6ff32ea812821ef873ee8f155a531 *DESCRIPTION
bc71a353479674297632a0dd9b31451b *NAMESPACE
546928bb3efabf260b78d0a315581f18 *NEWS.md
62e5576c4561f53ea294740a1762761e *R/CredInt_make_aamass_results.R
f7b4694870c84fc69b4875fbbef32f16 *R/CredInt_make_annual_flux_results.R
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1ee6bd71c3ec9ca6528f20f7c72888d8 *R/CredInt_make_daily_migration_results.R
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45ca67d77102211c0969de8dd969b92a *R/CredInt_make_monthly_results.R
3a64fa4de090eae106808b07b1a9e12e *R/CredInt_make_network_results.R
8bb3ff7db87c79c4f8f90804e4199bfd *R/CredInt_make_parameter_results.R
b5c2526c7d7ee9c26c6f43accbc8c4b2 *R/CredInt_make_target_results.R
27549e9935c68cdb23e28a18bf7a58a8 *R/StrathE2E2.R
69f206569e84e9a914236620b1439a94 *R/StrathE2E_fit.R
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79f4060ce767a32474100670a88f470f *R/assemble_flow_matrix_from_model_annual_output.R
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8ba5c3d975cb15ebb10918b2d5e3db4d *R/boxplot_annual_compare_observations_with_ci.R
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0e33e18ddee12e6f6aae20f77deaf5ee *R/boxplot_monthly_compare_observations.R
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200092283d2370c84e2b548d0637ab47 *R/build_annual_drivers.R
19b828b574dee121da40a2ba32002cad *R/build_initial_state.R
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7332bfeff7696aae518ee0dc1af3d55f *R/build_model_run.R
e921ae1adfd6314c88c2df0a9214f01b *R/calculate_error_function.R
cc7d162456066e7bb822dc7cfb93ae65 *R/calculate_uptakes.R
f9b1c44dcdbc23703067b213eb117559 *R/compare_two_runs_aam.R
a36886704187696998a9b5682ef06fc8 *R/compare_two_runs_catch.R
533962ece6c4b0a9f27b29162ee15c91 *R/concatenate_raw_mc_data_files.R
0815cce0964d7bc38e42b5a20cd00a75 *R/concatenate_raw_sensitivity_data_files.R
427af980b0fa0fed6f9b619ba74ba1ae *R/derive_annual_results_inshore.R
6237cb6a10b2e9e19eef85b4aac46810 *R/derive_annual_results_offshore.R
a53244c6c840053472c551ec82cf5887 *R/derive_annual_results_wholedomain.R
e73ba131862146550722e392c24c7ba4 *R/derive_model_target_results.R
463ba2572b8e95c738cf02f5372af916 *R/disaggregate_landings_discards_by_gear.R
415fdd82b8e4b5e3a77add480546916e *R/e2e_calculate_hrscale.R
db5003a3f899042f2dd9686ec9c502ea *R/e2e_compare_obs.R
1335e24647b371a558dadaf0c9aa901b *R/e2e_compare_runs_bar.R
3e5f6cebf5003e3abdfe188ccaeecc24 *R/e2e_compare_runs_box.R
91522d51078ebe506b5723b73c0d7bab *R/e2e_copy.R
36e7c1a98cb56ea46a906cd24774ea1c *R/e2e_extract_hr.R
331d3c9152a41bf2605eda713bfc91db *R/e2e_extract_start.R
4ac75b43632b1985f584b2c9c7dbf13c *R/e2e_get_parmdoc.R
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02e8c31d610580859d6a247028b46ced *R/e2e_optimize_act.R
2dd7d2cc12fb5c7ca2044cd27f67b215 *R/e2e_optimize_eco.R
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456e3d4fc4c0d7a1829f7a4176e96ffe *R/e2e_plot_catch.R
1dc4a446eaf628475e79bca9818ae5dc *R/e2e_plot_eco.R
3f522b846988a621f7fef71280e8dd94 *R/e2e_plot_edrivers.R
590cd717b90992969e812e9102b3655d *R/e2e_plot_fdrivers.R
931a5bd83bc0fbc4049c2b76241e37a1 *R/e2e_plot_migration.R
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0051ee8ed57029b9617f5ed546e45e8a *R/e2e_plot_ts.R
2086990394e0757f0bc0195a98114d19 *R/e2e_plot_ycurve.R
3138f8221a3de0301a643ad3892d3ba8 *R/e2e_process_sens_mc.R
9b9127c90bd438f4739256df4740934f *R/e2e_read.R
95609360fbc2fb0cabcb31e1c8788c8d *R/e2e_run.R
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53151d217608263706424b0f687e90cc *R/extract_final_year_of_run_plus_volumetric_data.R
1ac0a3f498e24e8318f386d7bc33eb24 *R/extract_simulated_catch_land_disc_by_gear_for_given_year.R
7a4a22d84be268c51b25c202a8e500b0 *R/extract_timeseries_annual_landings.R
247c5ec8e37e7bb024301d6f54452a29 *R/fishing_fleet_model.R
133277cce2eaf0c03d64d89a6d91e6d3 *R/generate_df_yield_curve_data.R
be8683fae720aa1963ac0ec601ae567b *R/generate_pf_yield_curve_data.R
211b28dd4756001b859e8dcdea48345c *R/internal.R
2f7f1bf462982f08fb094f2d013ecd83 *R/interpolate_drivers.R
3bbec54579ec43ce5c66661b871d8c55 *R/monthly_averages_of_final_year.R
71dfcd80132c2044f5ec7119b5e6cd87 *R/optimize_activity_mult_eco.R
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8f95427e98cad069a08061fe43289eb7 *R/perturb_parameters_all.R
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1849a42e72186b5ee9218acad3dfcae8 *R/plot_df_yield_curve.R
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be002684b830add0ed76c737ede53d83 *R/plot_final_year_migration_data.R
62db2da34e9d8863b94655055155140e *R/plot_final_year_migration_data_with_ci.R
dde74468ef18427421f153efea282965 *R/plot_final_year_time_series_data.R
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9db8793324ea3861c9ac4fc060c54c32 *R/plot_final_year_trophic_data.R
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0ed6ad19f7ee4ead6a21fb9c0e4dd095 *R/plot_for_each_gear_catch_by_guild.R
007c145d7683c1e238805148ba3b4eef *R/plot_for_each_guild_catch_by_gear.R
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4d860bffb7990fa53e7830f4eee77616 *R/plot_gear_guild_harvest_ratios.R
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37106eab88cdc3feff4babe4cf80de9d *R/plot_inshore_vs_offshore_anavmass.R
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8d06ff482c5e86aed407ded0bede651f *R/plot_mc_parameter_likelihoods.R
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2d8cf018cc001a5f0bab3162e35dfab3 *R/process_sensitivity_analysis_results.R
7cbe3b08c88dd58662da544f378243a9 *R/read_SD_credint.R
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1e9004c22cc4d93c1a756ab7a9ae61d8 *R/read_chemistry_drivers.R
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4fed1b7f54d307f422f4a55426252536 *R/read_initial_state.R
3b6fe453e6edc443f9261e6b8901bcc8 *R/read_monthly_target_data.R
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3f7e5e790ecdd7690401a49755986ec0 *R/write_fitted_parameters.R
8cc77395901af34e7e72b988dac8947a *README.md
1c4f5a0a505056b9de18d7aebd1048a8 *build/vignette.rds
0cb1142a6586c8ae1d0d08be18316449 *inst/CITATION
7e2b82522bcebc671ab9c5a39c9be879 *inst/doc/StrathE2E2_CheatSheet.Rnw
2e26290a3c66ff40a00a6d5380fe4082 *inst/doc/StrathE2E2_CheatSheet.pdf
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