3964cd6b0772ca1d1cf5ee891a7281ad *DESCRIPTION
926c8833629c65af49773b2232bd5577 *LICENSE
73b62308bcfd9e46615cefa428b4457e *NAMESPACE
f14f04bdde45a2def6b3d203a68c392b *NEWS.md
2409010bbf6d408b57aedd5a3ab2c355 *R/LogLogisticRegression.R
a67d9dc8f53857bd6445d5f7cba8df67 *R/SanityCheck.R
8732eb717df77d5a0b6d24f64ebb0224 *R/ToxicoSet.R
9ff161d35b22153174a28d0b6d80c219 *R/as_tSet.R
7d275879eb6180022458ff42f0f49884 *R/columnsAsCharacter.R
9fa18b2f2e8632d37cc1bb4c6843c9b8 *R/computeAUC.R
ddeeeae55aa8361e234f7f267613fc0a *R/computeDrugSensitivity.R
38a238ab9dfec8ca2f71d1200ca832ce *R/computeIC50.R
6dfee029e9cc37dd5a2a0e91e1d384a6 *R/computeICn.R
9c0865325722569431aae1ec0f123496 *R/dataset.R
fb2c25a35c7eea525b2d86df05930ac7 *R/dmedncauchys.R
bd429b3fc705f363957a94d9fa387f1d *R/dmednnormals.R
475c4026393e12c37cb92031b759ce94 *R/downloadTSet.R
80b613b61bf630b10cfa58396927e340 *R/drugGeneResponseCurve.R
a9b67566296bcc835ced3727cf7bd574 *R/drugPerturbationSig.R
0d5ebfddce070ab9f7a1401c136c4ed1 *R/drugTimeResponseCurve.R
be9dce5bdcdfbf9291cfe8d45e78c81b *R/geneDrugPerturbation.R
8dd7765678d53951efa2e7c6712f3ed1 *R/geneDrugSensitivity.R
f70e9b5deee5e5b5c7c30802180a07be *R/globals.R
2d9069b9e3253a6dbaa93759dcff71ba *R/paramErrorChecker.R
5e28697325620b94889041c7d2484c79 *R/paramMissingHandler.R
67a2ccd4837d448c90257cb2af7a32f4 *R/paramMissingHandlerTests.R
58a44a1b90500d24942168d50f2db022 *R/rankGeneDrugPerturbation.R
08de60c84949be26961689943621aa7f *R/rankGeneDrugSensitivity.R
070ccc14fa469e5f5a41fbb326e2ca67 *R/saveTSetAsGroundTruth.R
3ff9a2b54d35e3fb9c3ee1ea202750fe *R/signatureClass.R
3c1730f6b7ae3bebcdd824ad9eef6b5c *R/summarizeMolecularProfiles.R
799716497cfddedee53fe6dbd062d4f9 *R/summarizeSensitivityProfiles.R
2e237e852ddb9f1365cb99fbbc675bb8 *R/theoreticalFit.R
73ae433738631b26823cddc8bf12dbb4 *R/utilityFunctions.R
3176d7fb9edc4cc6f8d1c1c581175f9c *R/zzz.R
1c5164028b5657a2a02ab8a1f9356ed9 *README.md
94412fcc8df5bd52dd41022246393586 *build/vignette.rds
ccd625c8a6de78c5637a98d94a92fe68 *data/HCC_sig.rda
56c57ce9f5ab778d80a7ea9344ee5b7a *data/TGGATESsmall.rda
1698ca2bdb0ce7c2d0a38289259c3104 *data/datalist
ce246c20cd01d512e1a29913696116c5 *inst/doc/toxicoGxCaseStudies.R
56cf23fefa50efb7f0b7d7e90db76f22 *inst/doc/toxicoGxCaseStudies.Rmd
5403e7f490fa27cbeb82d7abcecfb49a *inst/doc/toxicoGxCaseStudies.pdf
a93caa666db4b00789f6c35cf45c9253 *man/HCC_sig.Rd
0699cdb0a1cab712c19f9684c40a0ea0 *man/TGGATESsmall.Rd
f10d191bff1032c20753e201c09edde5 *man/ToxicoSet-class.Rd
be61daba7dc658a9190c5e30cb38312d *man/ToxicoSet.Rd
c93d1857015a0f60ee547074b12d3077 *man/ToxicoSig.Rd
6f973199b5da31efce182956930a36d4 *man/availableTSets.Rd
6dc8efbe785772831452d164d4aa173e *man/checkTSetStructure.Rd
178e75cb89dd574ce353c4d92efb4b36 *man/computeAUC.Rd
14ce80197f9f26ce4d4088bd9584b265 *man/computeICn.Rd
7d8701a10a8827e2154a985e4a9cad32 *man/dim-ToxicoSet-method.Rd
58d2fe4e862e9928030a443259d385fa *man/dot-saveTSetAsGroundTruth.Rd
4c284d10e29e486830c016ba23c33c8d *man/downloadTSet.Rd
27f88d6194404a3e7577e5f116e55dc1 *man/drugGeneResponseCurve.Rd
1dcd372553f828fa25a7f93d0cca497b *man/drugInfo-set.Rd
624b508ed9501153786291936940ea37 *man/drugInfo.Rd
8a7faf60df13c67427db7cd0be21d405 *man/drugNames-set.Rd
1d21c815e4b73e2cc4363f2052514332 *man/drugNames.Rd
cc316057e0f770f8a524ee832198afca *man/drugPerturbationSig.Rd
dfb28f74a1e5e07efdb42db861f4e89a *man/drugTimeResponseCurve.Rd
8cffbb11a9230ab28b1c5bc78f69329e *man/geneDrugPerturbation.Rd
2e5d767fb033ecf922f7574bc8abb0c8 *man/logLogisticRegression.Rd
386fb59788ac596bae4490b3e4c668df *man/mDataNames-ToxicoSet-method.Rd
0e0e267350af11311121e4a4a4c0b202 *man/msg_verbose.Rd
e4cf48c54729658ac3f8fd1399f51366 *man/names-ToxicoSet-method.Rd
df6b508da3e1f0acf09415866c4c0c3f *man/pharmacoSettoToxicoSet.Rd
ffa516239dd3b3d8f18d9bfa9337e77c *man/rankGeneDrugPerturbation.Rd
82b9b8d568513e4792e09314189ccf67 *man/show-ToxicoSet-method.Rd
bc549454d32698081a30c2ac2e9ed70f *man/show-ToxicoSig-method.Rd
6a48aa460f3b38467d9adae713d3719b *man/showSigAnnot.Rd
ed27af5aaa2da582f8bef1b95494a4b6 *man/sub-ToxicoSet-ANY-ANY-ANY-method.Rd
042a9719bd39d3361ad683197191bc37 *man/subsetTo.Rd
41d25313a831a8eaf3217f15895e882c *man/summarizeMolecularProfiles.Rd
adc7d5de4203a6122cc3d1f34d879d84 *man/summarizeSensitivityProfiles.Rd
2881dfb10ab8e1fa0d6816388999e19c *man/updateCellId.Rd
648baa9743ed1f7e5e727c6a6823741f *man/updateDrugId.Rd
9a761100eee39897b131f2f24eb16ddf *man/warn_verbose.Rd
3eab07fc89d145dca39fd55e7fddd08a *vignettes/CS1_published.png
91539aeba57721825850508b3373bf8e *vignettes/ecology.csl
4d3f403672b3391e0d5d34dec824b2d2 *vignettes/header.tex
beacffce0e61028165d34735fb00d9b8 *vignettes/manuscript.latex
56cf23fefa50efb7f0b7d7e90db76f22 *vignettes/toxicoGxCaseStudies.Rmd
