# Generated by roxygen2: do not edit by hand

export(ToxicoSet)
export(ToxicoSig)
export(availableTSets)
export(checkTSetStructure)
export(computeAUC)
export(computeIC50)
export(computeICn)
export(downloadTSet)
export(drugGeneResponseCurve)
export(drugPerturbationSig)
export(drugTimeResponseCurve)
export(geneDrugPerturbation)
export(logLogisticRegression)
export(msg_verbose)
export(pharmacoSettoToxicoSet)
export(rankGeneDrugPerturbation)
export(showSigAnnot)
export(subsetTo)
export(summarizeMolecularProfiles)
export(summarizeSensitivityProfiles)
export(updateCellId)
export(updateDrugId)
export(warn_verbose)
exportClasses(ToxicoSet)
exportMethods("[")
exportMethods("cellInfo<-")
exportMethods("cellNames<-")
exportMethods("drugInfo<-")
exportMethods("drugNames<-")
exportMethods("featureInfo<-")
exportMethods("molecularProfiles<-")
exportMethods("pertNumber<-")
exportMethods("phenoInfo<-")
exportMethods("sensNumber<-")
exportMethods("sensitivityInfo<-")
exportMethods("sensitivityProfiles<-")
exportMethods(cSetName)
exportMethods(cellInfo)
exportMethods(cellNames)
exportMethods(dateCreated)
exportMethods(dim)
exportMethods(drugInfo)
exportMethods(drugNames)
exportMethods(fNames)
exportMethods(featureInfo)
exportMethods(mDataNames)
exportMethods(molecularProfiles)
exportMethods(names)
exportMethods(pertNumber)
exportMethods(phenoInfo)
exportMethods(sensNumber)
exportMethods(sensitivityInfo)
exportMethods(sensitivityMeasures)
exportMethods(sensitivityProfiles)
exportMethods(show)
import(data.table)
import(downloader)
import(ggplot2)
import(methods)
importClassesFrom(CoreGx,CoreSet)
importFrom(Biobase,"assayDataElement<-")
importFrom(Biobase,"fData<-")
importFrom(Biobase,AnnotatedDataFrame)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,assayDataElement)
importFrom(Biobase,exprs)
importFrom(Biobase,pData)
importFrom(CoreGx,"cellInfo<-")
importFrom(CoreGx,"sensitivityProfiles<-")
importFrom(CoreGx,cSetName)
importFrom(CoreGx,cellInfo)
importFrom(CoreGx,cellNames)
importFrom(CoreGx,dateCreated)
importFrom(CoreGx,fNames)
importFrom(CoreGx,featureInfo)
importFrom(CoreGx,mDataNames)
importFrom(CoreGx,phenoInfo)
importFrom(CoreGx,sensNumber)
importFrom(CoreGx,sensitivityMeasures)
importFrom(CoreGx,sensitivityProfiles)
importFrom(CoreGx,unionList)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(caTools,trapz)
importFrom(dplyr,"%>%")
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(graphics,hist)
importFrom(magrittr,"%<>%")
importFrom(parallel,makeCluster)
importFrom(parallel,parSapply)
importFrom(parallel,stopCluster)
importFrom(reshape2,acast)
importFrom(scales,rescale)
importFrom(stats,anova)
importFrom(stats,complete.cases)
importFrom(stats,dcauchy)
importFrom(stats,dnorm)
importFrom(stats,formula)
importFrom(stats,glm)
importFrom(stats,integrate)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,optim)
importFrom(stats,p.adjust)
importFrom(stats,pcauchy)
importFrom(stats,pf)
importFrom(stats,pnorm)
importFrom(stats,rcauchy)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(tibble,as_tibble)
importFrom(tidyr,gather)
importFrom(utils,read.table)
importFrom(utils,sessionInfo)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(utils,write.table)
importMethodsFrom(CoreGx,"cellNames<-")
importMethodsFrom(CoreGx,"featureInfo<-")
importMethodsFrom(CoreGx,"molecularProfiles<-")
importMethodsFrom(CoreGx,"pertNumber<-")
importMethodsFrom(CoreGx,"phenoInfo<-")
importMethodsFrom(CoreGx,"sensNumber<-")
importMethodsFrom(CoreGx,"sensitivityInfo<-")
importMethodsFrom(CoreGx,molecularProfiles)
importMethodsFrom(CoreGx,pertNumber)
importMethodsFrom(CoreGx,sensitivityInfo)
