a2708319c6d3977f6b3f9b9f01c69b58 *DESCRIPTION
3fa00250d852b6448149384b6289c8a8 *NAMESPACE
0da8af4612b1d8560a1c918ca40220c9 *NEWS
e43cf628ec60a9fbb86e087174b4b694 *R/BF_Rao_Blackwell.R
404870f1f206e5ccacc99086148eb0f9 *R/BF_auxiliary.R
f8747c405b2e8c8acec04c9d84692a40 *R/BF_likelihoods.R
443247ce1e34466c22a75fe1bb110418 *R/BF_marginalMPT.R
4c15f34048ca3db9279674e933476034 *R/BFslope.R
0ca71ac87bc3ee7b3c988d232ca04ff9 *R/CollectionOfInputProcessingFunctions.R
1053f598a5575418ae0c40001e3514cf *R/PPP.R
924a8e5c32f3a291549f4b1f0189b6b6 *R/RcppExports.R
e4fdbad8101cbda0c537a707a92395ee *R/T1perGroup.R
a35cc90d13b61078dbc47b81b94bbb68 *R/TreeBUGS-package.R
b8724003ca22020f868759f748be5dff *R/WAIC.R
44f07f426fc983e287877c89b32f4452 *R/arnold2013.R
b73e70b6f97c10833a12d2ca35fb936b *R/betweenSubjects.R
d27528d2b2f39c704f7609b24f74569d *R/callingSampler.R
d0695b50429b04aff96363ee4111b9c7 *R/checkFunctions.R
a8af8a27083930b4bba6b15e08dd01e9 *R/corSamples.R
3a42c58db23f905d20077883ab7deb47 *R/correlationBayes.R
28fa2624a18a366fb7eb3faa07da7f0b *R/correlationBayesMCMC.R
e567b74107c362b0cd9c8043fb267335 *R/covCorrelationString.R
346cffd4bd1f75e7353660513d868eeb *R/covDataRead.R
13de4c675f54042227fde73113a12f95 *R/covFactor.R
545320dfae9be9242f99f0f137f4e068 *R/covPredictorHandling.R
86d9b6e01be3c26b06a04e9efeba3a36 *R/covariateHandling.R
c04d5a5ab7cde07b3dd1c0e38e889c71 *R/extendMPT.R
380c41f8b6aba5aabf8042111a523e01 *R/fitBetaMPT.R
51e1ef64c38f9ca0059aaf9a8c7ba6a6 *R/fitBetaMPTcpp.R
e2b3326abf5d9063b84b432e52e53cb2 *R/fitModel.R
076d76eaba6707554dd47295657a573e *R/fitModelCpp.R
a7c661d1a277787f103502fa88e4cbd2 *R/fitSimpleMPT.R
e21e1e0b8c6148b1da649abba95b9339 *R/fitTraitMPT.R
0345bdc6de00995abac7472b63a825da *R/genDataBeta.R
81f70ae96e30c56ba0f86d9369aa4a9d *R/genDataCheck.R
9054a1fb579566a8b0a84a210d11d1ba *R/genDataMPT.R
b4b0e3ace83efb1d1e09f9b8fba91172 *R/genDataTrait.R
dc96fd5e035a8e38d3ae407c41419544 *R/getGroupMeans.R
4e5a2eefcff797995978f9e1d6047702 *R/getParam.R
0b0596b3c2d847730bb55ce27b029378 *R/getSamples.R
e899dddba20e383705c66c608ae59026 *R/makeModelDescription.R
3d3646fb068399795abd9370b47d9d02 *R/parseEQN.R
0104afc3766ed147f0cec0a0d7bbacd6 *R/parseRestrictions.R
9e92d5d1fda5e2313b59e56ad1fa0638 *R/plotConvergence.R
29a40a36bf13b9c5140df5e957d71d88 *R/plotDistribution.R
aaa62ccc352a125bbbd1c4677d6c614e *R/plotFit.R
424f64f75e46c25ecae748b4f544ceb9 *R/plotFrequencies.R
a5b61a0ed595190559f88fad5f149e27 *R/plotParameters.R
a6032ba29b1f07076da5827faa6aa9f7 *R/plotPrior.R
97e62704355d0f14c62849630398cc96 *R/plotPriorPost.R
638da69f64c6ca40b5b9f3b4e233d342 *R/posteriorPredictive.R
7ed9c00f7b9df98bc398a1b06ab44537 *R/printMPT.R
e09e0dfcbb4be1d5be3b1e07990eb654 *R/priorPredictive.R
8a95495fefbe1cc83523b63ae16238ab *R/probitInverse.R
cb5b9f1ef6d750987b5e3e5c3c323707 *R/readEQN.R
2e02684f789171c8c08c10dd84ec6cb3 *R/renameBUGSoutput.R
65681d40393bdbeafad2c106cf5009cc *R/sampleHyperprior.R
64b309a1f40964a061103b9408c19cb6 *R/summarizeMCMC.R
881918ba2f46a876c5699184eaea6e38 *R/summarizeMPT.R
437a53a16f06ec071c86d8fd69e55e30 *R/testHetChi.R
841b475ec9ed40dff8a9dce02703752b *R/testHetPerm.R
6316d30d5b102da353919b6b3f8c5d8f *R/thetaHandling.R
c36fe5e13200b39d8fcf06759e0743be *R/transformedParModelfile.R
99469fb6f5821e8da62bc994e0d9ac3a *R/transformedParPosthoc.R
01a38fa193d24cd7da0dfcf6eb12c7b0 *R/within_subject_EQN.R
502d78165c5bd5eb54af1a5bfdaf7cc3 *R/writeSummaryToFile.R
e351f0e322caa597787e0c5e74c2f4e5 *build/vignette.rds
71355a4f936ee6d3f69e673fa73d4237 *data/arnold2013.RData
4c68affe14ef007de315744960951444 *inst/CITATION
05e74db71d7fafbaacb957b1daa34dba *inst/MPTmodels/2htm.eqn
d9a6bed11ce4e4545fd0001882d8b950 *inst/MPTmodels/2htsm.eqn
c68dc54b1cbda575c4d8288f1bcabca8 *inst/MPTmodels/winbugs_zero_trick.jags
f4eb373bf0db31ac3a40806e734938d2 *inst/doc/Heck_2018_BRM.pdf
ac3fa030761c52a63ae1195498a032dd *inst/doc/Heck_2018_BRM.pdf.asis
797103cbbda897f9525caffeb124cb90 *inst/doc/TreeBUGS_1_intro.R
59ab8346defdc394005c2532a3337366 *inst/doc/TreeBUGS_1_intro.Rmd
14ac7487386718838d0c1c1a6ecaf1cb *inst/doc/TreeBUGS_1_intro.html
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d88d1957d42521bf627c83f484b1a450 *inst/doc/TreeBUGS_2_extended.Rmd
957ddee0793f5d3ed98fd8b34da3ec5d *inst/doc/TreeBUGS_2_extended.html
95eb385160919eb8f9d52ed3578ca24e *man/BayesFactorMPT.Rd
cc9dc837539ee0d44dcce7709cd3bfd2 *man/BayesFactorSlope.Rd
51d4fa4eeb2dc98d53804f1752d19e93 *man/PPP.Rd
431e6d50bd8c35136bb9d2940ff8320e *man/TreeBUGS-package.Rd
6492c0c1b8e4a0372e4a42502b2095ff *man/WAIC.Rd
12237d69902a22df8f1a76cf5e4acb3b *man/arnold2013.Rd
d0d83c70627674239bc9bf3ad8ce9736 *man/betaMPT.Rd
3e6f1536bbb6d9d119c15780b3c8cba2 *man/betaMPTcpp.Rd
bfd86202964b82a024209bc3a15faad4 *man/betweenSubjectMPT.Rd
006af1a1df046ab9f58169c5827407e3 *man/correlationPosterior.Rd
b081d911a50cfdc20d467010e6042b63 *man/extendMPT.Rd
91709228a9d5cd404adcfb517147c703 *man/figures/TreeBUGS.png
623e441d03e7537a61eb6f5efe87ec8a *man/genBetaMPT.Rd
62b57b70a58669357649b20b089a01b0 *man/genMPT.Rd
9bb089dd152c9d7838a709a6adbacbf2 *man/genTraitMPT.Rd
cf9b51403fb3eb4672c88ba093a81715 *man/getGroupMeans.Rd
0498a4b1fdce3f10a853d7629614e9cd *man/getParam.Rd
25ddbb953149aef04eb8a2f4abb9f6f7 *man/getSamples.Rd
c015863a4b0bc9da30aa734bf84fa83d *man/marginalMPT.Rd
7785301b03d0cbe27d40d11d6d4890c6 *man/plot.Rd
45d71ad13a638801cf929a8436906f1f *man/plotDistribution.Rd
9a3096d7523b1b3dcddb9626d9e38d1b *man/plotFit.Rd
0d858485d5a5c346cbbcff0566b718d4 *man/plotFreq.Rd
845b38228f23a56069e9b1835b997687 *man/plotParam.Rd
6474cf3ee20b6a511895ed1da1896019 *man/plotPrior.Rd
a34f82fb63ce574d4b2642025b9819e4 *man/plotPriorPost.Rd
4be192fd14fb6c424d6a84a89c4eb992 *man/posteriorPredictive.Rd
8237437e7f39fb22440c6c10a58a057a *man/priorPredictive.Rd
da3f6bc411873ed15f4082aa5df2832c *man/probitInverse.Rd
23cb0c0b8f12287a3dee8d44d4e87489 *man/readEQN.Rd
2dc94c8dc68ef0acac324e6d84aeac95 *man/simpleMPT.Rd
6698b8341f4be426b81914610d59dbfd *man/summarizeMCMC.Rd
4ead76f88196fe795e113111a3e4455e *man/summarizeMPT.Rd
cf90d63c3a0d317b292c0a877d276e6e *man/testHetChi.Rd
19227d2da03f42b67a33811fd8a986b1 *man/testHetPerm.Rd
d98a46c4bd86fcebdbe4ec3e5342748d *man/traitMPT.Rd
63b9edaf100ebc1a48b5c72a4a0e5390 *man/transformedParameters.Rd
7c60d26e5a977740228edadf86a685af *man/withinSubjectEQN.Rd
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
1b9ed59c60a2059be7ca90b25b4a2071 *src/RcppExports.cpp
606033d59a7ca99d88e5f3447c573664 *src/betaMPT.cpp
53a26561123e16e86b4359c4ac6d3a28 *src/init.c
a34ce7c6b1a02949b611b62fceeca759 *src/loglikMPT.cpp
3cd4ae2b745a244c81a09946f6d340fe *tests/testthat.R
03d4607c59a68726271ebfe1905b5dbb *tests/testthat/test_genMPT.R
e30f460b6ca9ba84b1e47013b34ca259 *tests/testthat/test_readEQN.R
ac3fa030761c52a63ae1195498a032dd *vignettes/Heck_2018_BRM.pdf.asis
59ab8346defdc394005c2532a3337366 *vignettes/TreeBUGS_1_intro.Rmd
d88d1957d42521bf627c83f484b1a450 *vignettes/TreeBUGS_2_extended.Rmd
