# Generated by roxygen2: do not edit by hand

S3method(ClusteringEntropy,Splits)
S3method(ClusteringEntropy,list)
S3method(ClusteringEntropy,multiPhylo)
S3method(ClusteringEntropy,phylo)
S3method(ClusteringInfo,Splits)
S3method(ClusteringInfo,list)
S3method(ClusteringInfo,multiPhylo)
S3method(ClusteringInfo,phylo)
S3method(NNIDiameter,list)
S3method(NNIDiameter,multiPhylo)
S3method(NNIDiameter,numeric)
S3method(NNIDiameter,phylo)
S3method(SplitwiseInfo,Splits)
S3method(SplitwiseInfo,list)
S3method(SplitwiseInfo,multiPhylo)
S3method(SplitwiseInfo,phylo)
S3method(median,multiPhylo)
export(.TreeDistance)
export(AllSplitPairings)
export(CalculateTreeDistance)
export(ClusteringEntropy)
export(ClusteringInfo)
export(ClusteringInfoDist)
export(ClusteringInfoDistance)
export(CompareAll)
export(DifferentPhylogeneticInfo)
export(Entropy)
export(ExpectedVariation)
export(GeneralizedRF)
export(InfoRobinsonFoulds)
export(InfoRobinsonFouldsSplits)
export(JaccardRobinsonFoulds)
export(JaccardSplitSimilarity)
export(KCVector)
export(KendallColijn)
export(LAPJV)
export(LnTreesConsistentWithTwoSplits)
export(MASTInfo)
export(MASTSize)
export(MatchingSplitDistance)
export(MatchingSplitDistanceSplits)
export(MatchingSplitInfo)
export(MatchingSplitInfoDistance)
export(MatchingSplitInfoSplits)
export(MeilaMutualInformation)
export(MeilaVariationOfInformation)
export(MutualClusteringInfo)
export(MutualClusteringInfoSplits)
export(MutualClusteringInformation)
export(NNIDiameter)
export(NNIDist)
export(NormalizeInfo)
export(NyeSimilarity)
export(NyeSplitSimilarity)
export(PathDist)
export(PhylogeneticInfoDistance)
export(ReportMatching)
export(RobinsonFoulds)
export(RobinsonFouldsInfo)
export(RobinsonFouldsMatching)
export(RobinsonFouldsSplits)
export(SPRDist)
export(SharedPhylogeneticInfo)
export(SharedPhylogeneticInfoSplits)
export(SplitDifferentInformation)
export(SplitEntropy)
export(SplitSharedInformation)
export(SplitsCompatible)
export(SplitwiseInfo)
export(TreeDistPlot)
export(TreeDistance)
export(TreesConsistentWithTwoSplits)
export(VisualizeMatching)
importFrom(TreeTools,AllAncestors)
importFrom(TreeTools,LnRooted.int)
importFrom(TreeTools,LnTreesMatchingSplit)
importFrom(TreeTools,LnUnrooted)
importFrom(TreeTools,LnUnrooted.int)
importFrom(TreeTools,NRooted)
importFrom(TreeTools,NSplits)
importFrom(TreeTools,NTip)
importFrom(TreeTools,Postorder)
importFrom(TreeTools,Preorder)
importFrom(TreeTools,RenumberTips)
importFrom(TreeTools,RootOnNode)
importFrom(TreeTools,SplitInformation)
importFrom(TreeTools,SplitsInBinaryTree)
importFrom(TreeTools,TipLabels)
importFrom(TreeTools,TipsInSplits)
importFrom(TreeTools,TreeIsRooted)
importFrom(TreeTools,TreesMatchingSplit)
importFrom(TreeTools,as.Splits)
importFrom(ape,Nnode.phylo)
importFrom(ape,drop.tip)
importFrom(ape,edgelabels)
importFrom(ape,nodelabels)
importFrom(ape,plot.phylo)
importFrom(colorspace,qualitative_hcl)
importFrom(colorspace,sequential_hcl)
importFrom(graphics,par)
importFrom(memoise,memoise)
importFrom(phangorn,SPR.dist)
importFrom(phangorn,path.dist)
importFrom(stats,dist)
importFrom(stats,median)
importFrom(stats,sd)
useDynLib(TreeDist, .registration = TRUE)
