Package: TreeSearch
Title: Phylogenetic Tree Search Using Custom Optimality Criteria
Version: 0.0.8
Date: 2018-03-08
Authors@R: c(person("Martin R.", 'Smith',
                  email="martins@gmail.com", 
                  role=c("aut", "cre", "cph"), 
                  comment=c(ORCID = "0000-0001-5660-1727")),
               person(given = "Emmanuel", family="Paradis",
               role = c("cph")),
               person(given = "Martin", family="Brazeau",
               role = c("cph"))
            )
License: GPL (>= 3)
Copyright: Incorporates C code from: ape by Emmanuel Paradis; Morphy
        Phylogenetic Library by Martin Brazeau
        <https://github.com/mbrazeau/MorphyLib> (GPL3)
Description: Searches for phylogenetic trees that are optimal using a user-defined criterion. 
  Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and
  Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.
  Handles inapplicable data using the algorithm of Brazeau Guillerme and Smith (2017) <doi:10.1101/209775>.
URL: https://github.com/ms609/TreeSearch
BugReports: https://github.com/ms609/TreeSearch/issues
Depends: R (>= 3.4.0)
Imports: ape (>= 5.0), memoise, phangorn (>= 2.2.1), R.cache, Rdpack,
        stats
Suggests: knitr, rmarkdown, testthat, xlsx
RdMacros: Rdpack
LazyData: true
ByteCompile: true
VignetteBuilder: knitr
RoxygenNote: 6.0.1
NeedsCompilation: yes
Packaged: 2018-03-08 15:23:45 UTC; ms609
Author: Martin R. Smith [aut, cre, cph]
    (<https://orcid.org/0000-0001-5660-1727>),
  Emmanuel Paradis [cph],
  Martin Brazeau [cph]
Maintainer: Martin R. Smith <martins@gmail.com>
Repository: CRAN
Date/Publication: 2018-03-08 22:46:59 UTC
