Package: TreeSearch
Title: Phylogenetic Tree Search Using Custom Optimality Criteria
Version: 0.4.3
Authors@R: c(person("Martin R.", 'Smith',
                  email="martin.smith@durham.ac.uk", 
                  role=c("aut", "cre", "cph"), 
                  comment=c(ORCID = "0000-0001-5660-1727")),
               person(given = "Martin", family="Brazeau", role = c("cph"), 
                  comment = c(ORCID = "0000-0002-0650-1282"))
            )
License: GPL (>= 3)
Copyright: Incorporates C/C++ code from Morphy Phylogenetic Library by
        Martin Brazeau <https://github.com/mbrazeau/MorphyLib> (GPL3)
Description: Searches for phylogenetic trees that are optimal using a 
  user-defined criterion. 
  Handles inapplicable data using the algorithm of 
  Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083>.
  Implements Profile Parsimony (Faith and Trueman, 2001) 
  <doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969) 
  <doi:10.2307/2412182>.
URL: https://ms609.github.io/TreeSearch,
        https://github.com/ms609/TreeSearch
BugReports: https://github.com/ms609/TreeSearch/issues
Depends: R (>= 3.5.0)
Imports: ape (>= 5.0), phangorn (>= 2.2.1), R.cache, Rdpack, stats,
        TreeTools (>= 1.0.0)
Suggests: knitr, rmarkdown, shiny, testthat
RdMacros: Rdpack
LazyData: true
ByteCompile: true
Encoding: UTF-8
Language: en-GB
VignetteBuilder: knitr
RoxygenNote: 7.1.1
NeedsCompilation: yes
Packaged: 2020-07-09 08:34:01 UTC; ms609
Author: Martin R. Smith [aut, cre, cph]
    (<https://orcid.org/0000-0001-5660-1727>),
  Martin Brazeau [cph] (<https://orcid.org/0000-0002-0650-1282>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Repository: CRAN
Date/Publication: 2020-07-09 12:20:06 UTC
