addErrorBars.Rd
addGrid.Rd
addGuideLines.Rd
addTraitToMEs.Rd
adjacency.Rd
alignExpr.Rd
* automaticNetworkScreeningGS.Rd
* automaticNetworkScreening.Rd
bicor.Rd
blockwiseConsensusModules.Rd
blockwiseModules.Rd
checkAdjMat.Rd
checkSets.Rd
clusterCoef.Rd
collectGarbage.Rd
consensusMEDissimilarity.Rd
consensusOrderMEs.Rd
consensusProjectiveKMeans.Rd
* corPredictionSuccess.Rd
corPvalueFisher.Rd
corPvalueStudent.Rd
correlationPreservation.Rd
cutreeStaticColor.Rd
cutreeStatic.Rd
displayColors.Rd
dynamicMergeCut.Rd
fixDataStructure.Rd
greenBlackRed.Rd
greenWhiteRed.Rd
GTOMdist.Rd
hubGeneSignificance.Rd
initProgInd.Rd
intramodularConnectivity.Rd
keepCommonProbes.Rd
labeledBarplot.Rd
labeledHeatmap.Rd
labels2colors.Rd
mergeCloseModules.Rd
moduleColor.getMEprefix.Rd
moduleEigengenes.Rd
moduleNumber.Rd
multiSetMEs.Rd
nearestNeighborConnectivityMS.Rd
nearestNeighborConnectivity.Rd
* networkScreeningGS.Rd
* networkScreening.Rd
normalizeLabels.Rd
nPresent.Rd
orderMEs.Rd
pickHardThreshold.Rd
pickSoftThreshold.Rd
plotClusterTreeSamples.Rd
plotColorUnderTree.Rd
plotDendroAndColors.Rd
plotEigengeneNetworks.Rd (needs examples)
plotMEpairs.Rd
plotModuleSignificance.Rd
plotNetworkHeatmap.Rd
projectiveKMeans.Rd
propVarExplained.Rd
redWhiteGreen.Rd
* relativeCorPredictionSuccess.Rd
removeGreyME.Rd
scaleFreePlot.Rd
setCorrelationPreservation.Rd
sigmoidAdjacencyFunction.Rd
signedKME.Rd
signumAdjacencyFunction.Rd
simulateDatExpr5Modules.Rd
simulateDatExpr.Rd
simulateEigengeneNetwork.Rd
simulateModule.Rd
simulateMultiExpr.Rd
simulateSmallLayer.Rd
sizeGrWindow.Rd
standardColors.Rd
stdErr.Rd
TOMplot.Rd
TOMsimilarity.Rd
unsignedAdjacency.Rd
* vectorTOM.Rd
* verboseBoxplot.Rd
* verboseScatterplot.Rd
* WGCNA-package.Rd
