41f57787448f1b64618d9ee406f93915 *Changelog
9337358742f7cf47f330b20d8cb9e6ef *DESCRIPTION
970fd32521fb5ab965eeec686834d06b *NAMESPACE
2640fb7286cab45b6de425c01109f80e *R/AFcorMI.R
ea14a2a861b238bbb31d9f54117b7fdb *R/Functions-fromSimilarity.R
5a86b88c501ec512d80bdb0b8f5886cc *R/Functions-modColor.R
097846fd303fca478b00861a23b4626d *R/Functions-multiData.R
1347d88bd3c1e46b846401fb53875e5f *R/Functions.R
b63eb52a98c6766dc3dee3e8f4fed84f *R/GOenrichmentAnalysis.R
c71beb3c2312e81f9102e918679745ce *R/accuracyMeasures.R
6694f89a89e904eb1bc90d28cf28fc37 *R/adjacency.polyReg.R
3cc995eb826b701ba4d3a7bf6ad64a3a *R/adjacency.splineReg.R
76ea8deeca756bdbb96604c592d4a4af *R/blockwiseModulesC.R
15468ef5e298f2fdb6320a53fe144051 *R/coClustering.R
ceee787204a986fedae3e8b3ce86d121 *R/collapseRows.R
93b1234770b325950074537bc2aad873 *R/collapseRowsUsingKME.R
46a73fe3580e01ceab1bdcb55c316c3c *R/conformityDecomposition.R
ba86cd4c5ea1b5da97813643852b9b7e *R/consensusDissTOMandTree.R
d6d27a97d406143ba2903727a829f7dc *R/corAndPvalue.R
ef41352d0c0b93098763376e22d39bb1 *R/corFunctions.R
334215568f66db3ee3a0a623a2d760fa *R/coxRegressionResiduals.R
aa9c7ff1a228742079e2cbd4a1f4c28e *R/dendrogramAdjustmentFunctions.R
a8d6c9153283aef82a2f791dff6cb521 *R/exportFunctions.R
269a880a70d3e9841f1f5c35818e4253 *R/heatmapWithLegend.R
da2729744a42bda91cc02ddf3714a612 *R/kMEcomparisonScatterplot.R
7c0bd97439814e6b98e3cc7e9d36cb00 *R/labelPoints.R
96d5aa01119759627ed62e38c14cd8cb *R/matchLabels.R
de5a35825d9b736b61c515ebee717d25 *R/moduleMergeUsingKME.R
d031f9111f460dd7c3476f92c13645fb *R/modulePreservation.R
d96c4db72edd76ecee257f03f3743c3e *R/mutualInfoAdjacency.R
b92717ee22aa436149b7a048d0f14720 *R/nearestCentroidPredictor.R
ff247c78f289e887d88ea719e482e2ee *R/networkConcepts.R
cbbf15f7e1af46c97769349028dcc197 *R/overlapTableUsingKME.R
1f84c828572b06bc6baf3ad5df077b99 *R/populationMeansInAdmixture.R
b9031c27dab6ce4d7c4e320a5d921234 *R/pquantile.R
1c35495264dc245f0c417f2797d649c1 *R/proportionsInAdmixture.R
5c9a2f96547277ac16d51ff265a8be8c *R/quantileC.R
0f6a00ada5b99112e8dadea807aa2a00 *R/qvalue.R
ccc79bd4eb6ee39d21d38293b67c0287 *R/smaFunctions-Rna.R
f87924d7f12e5bc286821069abd5101e *R/smaFunctions.R
f47410b4caeba609f5a5d92f0f6c8cee *R/standardScreeningBinaryTrait.R
f20cae9009e6bca9e4f19328f17a229f *R/stratifiedBarplot.R
e2e282ac0ba378da41a92b8cf1674007 *R/useNThreads.R
da598a8b053b4561a12f3cfeb3369273 *R/userListEnrichment.R
42a7d01f9a9dd9111fe1fdc42d4c7e26 *R/verboseIplot.R
e29601ffdd534e19063fb43c2b3fa75c *R/votingLinearPredictor.R
5bb96e7a7fa94cc541b9e20d45aad057 *R/zzz.R
f91e6d838280d88bfc34d6a7eb496abd *data/BloodLists.rda
57e70c426025d67e60b18990a4c8b543 *data/BrainLists.rda
565360ec0bb812e7fde7eae50cc0ff24 *data/SCsLists.rda
78ab8cd6e45bd752833cc0b36c677406 *inst/CITATION
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860df370b2d294160394795477d115f1 *man/BrainLists.Rd
3d222145ea6fe5dafcfd77a18b7764cc *man/GOenrichmentAnalysis.Rd
4de45938151062d0afaa35fbebd71074 *man/GTOMdist.Rd
04bc56f0398e1c9de3c4f9faea39e3b7 *man/SCsLists.Rd
358a7693a58846c2f047764271b189b1 *man/TOMplot.Rd
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502131e33c1e9b1c66d48d90aba59b22 *man/TOMsimilarityFromExpr.Rd
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8d7d42ffe2f393ffc0639eb753269012 *man/addTraitToMEs.Rd
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fc63f7aa7649405cc57998129b229ab5 *man/adjacency.splineReg.Rd
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8854659d08daa71228cc8195a47d0d5f *man/allowWGCNAThreads.Rd
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7d1125b681f75862a681278f61f7b74c *man/bicor.Rd
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5c5070c41bb89adbbe4f10d19c4faa59 *man/blockwiseConsensusModules.Rd
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5e958f0875508a71d357444f14b6179e *man/clusterCoef.Rd
a4dee3d59f71f9271fef45dbc884e50c *man/coClustering.Rd
0e141ce65efc5b1eca6710e6b5821e89 *man/coClustering.permutationTest.Rd
bfc146c70e960b9dd0332e758fc4c4a2 *man/colQuantileC.Rd
cb459c1d6e0de4bccf5635084712e4bd *man/collapseRows.Rd
36c92b8ae3dddd0ce0cf42916b20b47c *man/collapseRowsUsingKME.Rd
e3f8541b1a35d25d0767fca0ecd2a2b3 *man/collectGarbage.Rd
161399055c32a9010d1311b4987249b8 *man/conformityBasedNetworkConcepts.Rd
f02e1252a1f127594ba501f14727ad6d *man/conformityDecomposition.Rd
4b6bf406edcd173d39851f05614e3dfa *man/consensusDissTOMandTree.Rd
4c15b83e54f347c1b17a19530c169d74 *man/consensusKME.Rd
b7894dd42a2601088dca9dea50eff843 *man/consensusMEDissimilarity.Rd
171634ec94492cd2a68a284c88329b68 *man/consensusOrderMEs.Rd
dab0f9668d35ff557fb59dadb7f3b3fe *man/consensusProjectiveKMeans.Rd
b9485e39df23f4ab7353ba212c5db091 *man/cor.Rd
128359fd7ff1b72d74698461f42ae06a *man/corAndPvalue.Rd
19cd6ac7f5c9891b6f6be8fd4034f484 *man/corPredictionSuccess.Rd
ddd90d6b54aac459bd8af75db5f5e8a6 *man/corPvalueFisher.Rd
087446ede74deb76c5952eab930bcc3d *man/corPvalueStudent.Rd
c52e6fc1e3b1b5bb616681de0984d7b5 *man/correlationPreservation.Rd
06d6988c8a2b30e720ed769496a5573a *man/coxRegressionResiduals.Rd
ebd1b5154444b4b1ddb110a91453596d *man/cutreeStatic.Rd
76d1215fee27707480cb5b2bb4436754 *man/cutreeStaticColor.Rd
aa9a53d1eeea331b86022a2f85238b9d *man/displayColors.Rd
ec2017b186d25a4707f66d4069f3f18c *man/dynamicMergeCut.Rd
786230c8ae039c2c8747099158c380a7 *man/exportNetworkToCytoscape.Rd
39527ac4d9254ef2e92e5cd3e5fb101c *man/exportNetworkToVisANT.Rd
4f2aee2616cd6c8a62a69753510b8911 *man/fixDataStructure.Rd
a0878ec86150188ec97abfc2a3533b2e *man/fundamentalNetworkConcepts.Rd
5c4e293339f4d303fa68625fbaf5952f *man/goodGenes.Rd
e2d2e6eefbf8941f35be2cfc916d02cf *man/goodGenesMS.Rd
afbfd5c284ce86c6e75f95f2dfc0c929 *man/goodSamples.Rd
d3fe65a668dce150a0c08f604a10bdf0 *man/goodSamplesGenes.Rd
870fa35d0dc4771426a101e5742d2312 *man/goodSamplesGenesMS.Rd
23decbc236061c9afe2727ebb9cb4abc *man/goodSamplesMS.Rd
c32af802f17f6a13a8d1f9022269b151 *man/greenBlackRed.Rd
12305d5d343d64962da24a8c37729615 *man/greenWhiteRed.Rd
1282dbf2291264f8c714ba10c3c93b33 *man/hubGeneSignificance.Rd
4fd07bfe29e425479cf61a84f6e0b477 *man/initProgInd.Rd
d199088b5c80bfb44a87d682b18774ca *man/intramodularConnectivity.Rd
32d5ef81ec3c397542a9bec9dab1256c *man/kMEcomparisonScatterplot.Rd
367c8efa7aff57c91f508f4d6993ee0c *man/keepCommonProbes.Rd
244e3a67dcd5db8d955e1803a187a84f *man/labelPoints.Rd
4ed4ad8fb3eefb8fb3ebc018d50f24c1 *man/labeledBarplot.Rd
7baaa1b8c296a26530aacb143101501d *man/labeledHeatmap.Rd
4bbe76c64e465dd5d480f649370d8c31 *man/labels2colors.Rd
5257dea14695c56e26d792717a89de29 *man/matchLabels.Rd
caad2f4cd29ed55a6c2ff090d7090ecb *man/matrixToNetwork.Rd
b5b11c8f26921357d29697b240f1cb70 *man/mergeCloseModules.Rd
f1a00ba1c679c9a4e8182abf86425e77 *man/metaAnalysis.Rd
ffd97d40240349925bc44f5b1906d3e5 *man/metaZfunction.Rd
7edcdce8f159ca0dfa75c6381c252900 *man/moduleColor.getMEprefix.Rd
cadbc62207509c337b6a361997f5aff5 *man/moduleEigengenes.Rd
a1556571551b1d9d8f19e2a4aaa394c4 *man/moduleMergeUsingKME.Rd
271eded401e01f0e1e330f34d33afe22 *man/moduleNumber.Rd
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76676f3fdba6e9ca1d4ddccc3cc70fe9 *man/multiData.eigengeneSignificance.Rd
3330adb50056906610014dbe4a210cde *man/multiSetMEs.Rd
48e967e0860b3cc1c76153807fe77b24 *man/mutualInfoAdjacency.Rd
423948deb1875655f76b5aab3bd18ff3 *man/nPresent.Rd
4e2609e6187beae39db8439877b6c2b4 *man/na.Rd
f254d52b87268800ff55ac2372a1a308 *man/nearestCentroidPredictor.Rd
f3528eca336b9c278d84c2226ac5e946 *man/nearestNeighborConnectivity.Rd
9de47712cf569e3de94cfff5f17a72ea *man/nearestNeighborConnectivityMS.Rd
3982e0f77862c8c9993a49f878258fda *man/networkConcepts.Rd
9b0d99621400d82fee9c9a34dde5c5eb *man/networkScreening.Rd
b09f16bec8a77dfcb9dd23368a96afa1 *man/networkScreeningGS.Rd
00521be977eaaa72457d4ee52ab407cb *man/normalizeLabels.Rd
2d07d860ac50f01f643f863c60251bde *man/numbers2colors.Rd
f83ccb839604a86b05569d80cd3a48cc *man/orderBranchesUsingHubGenes.Rd
6dec40376ce19b7cc0d0d8d2ac3d25a6 *man/orderMEs.Rd
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998217fb69c710058793e302823f9ab2 *man/overlapTableUsingKME.Rd
510ec68b075cbd5801c34f67c71aa541 *man/pickHardThreshold.Rd
359959bf9ff89884eb751e5e801ad3e6 *man/pickSoftThreshold.Rd
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34ca3f349ff3688b714a47336574c71b *man/plotColorUnderTree.Rd
7d497231fea98cce2f40f9016d26c350 *man/plotCor.Rd
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8ee0e2fdd85ddb8c17db4aa1730bd38a *man/plotEigengeneNetworks.Rd
f66707ae89f83b6b3813ade2a347c305 *man/plotMEpairs.Rd
94e7429dc00dde611d83d126ffc58bf6 *man/plotMat.Rd
f2fa34c2378f9fc80f160eb71192ca58 *man/plotModuleSignificance.Rd
df0a200d8b0404a897490031b0ee24b9 *man/plotNetworkHeatmap.Rd
265ae07739aea9d9b5c1f6009db6bd99 *man/populationMeansInAdmixture.Rd
61fea614527a8b691118e31a7f4130b4 *man/pquantile.Rd
98a05e761090162822158e0c290ffd30 *man/prepComma.Rd
638576053aa6de4e1d9bd76f17cd417c *man/preservationNetworkConnectivity.Rd
335962ac3445b6b6c456b0cf45327859 *man/projectiveKMeans.Rd
6cd6c33ac81666fee9ab2934c15f14d1 *man/propVarExplained.Rd
130ed3a7ff1181931a0b1cd387c68dad *man/proportionsInAdmixture.Rd
bb449445c029765bd25b4132fc300727 *man/qvalue.Rd
33f922166bfa3232d2cfd31dd88e4098 *man/qvalue.restricted.Rd
bfb6acf64524a1f6952301cdf9d7e692 *man/randIndex.Rd
e8c0717cae5f64d23fcc6d7ab07908d7 *man/rankPvalue.Rd
3879996f7a57c695d10e536f8c7d6ffe *man/recutBlockwiseTrees.Rd
d3e76f8c1f8109e2f8be41df50d62640 *man/recutConsensusTrees.Rd
adec15fbabdc64fe49ca0d7c4629f723 *man/redWhiteGreen.Rd
337af1487821999b4adf9b267472449e *man/relativeCorPredictionSuccess.Rd
09f53652e9013b5e922ae51635c0bf45 *man/removeGreyME.Rd
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6a79360f6ec29c84aeb933bc46b4ff91 *man/scaleFreeFitIndex.Rd
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9cce33e7a075bc301deb614f4f23b8ed *man/sigmoidAdjacencyFunction.Rd
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bf41ed16f70a5dac85f4ee60b5e27548 *man/simulateDatExpr.Rd
a46f3274eb7bb0626ac9fe27beb808a9 *man/simulateDatExpr5Modules.Rd
e5de2b68f6a043eca3a9e6bd33ffc90d *man/simulateEigengeneNetwork.Rd
173fcea801e2d9b4c353bd5d00deab4c *man/simulateModule.Rd
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6496e932e9256cac6d44aa19e80ed191 *man/simulateSmallLayer.Rd
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4a3bc43e65fcea71ff478cb565e3ff0a *man/softConnectivity.Rd
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7ecad95060f87ef52377475bc0b16424 *man/standardColors.Rd
38f3be3815da878aefe82b8ed031d0f8 *man/standardScreeningBinaryTrait.Rd
08f1a4fccc3aefb0682181775f6f2718 *man/standardScreeningCensoredTime.Rd
7b4a9eefca4c24e78b3e419616836c45 *man/standardScreeningNumericTrait.Rd
5e81bfb27bfc037bea6d1bfe0e203c0e *man/stat.diag.da.Rd
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6ab30ee030ca77177432f41621046e17 *man/subsetTOM.Rd
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17da3078480f388b98a1fcde5baeb206 *man/vectorTOM.Rd
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5b60605817816b91df09d8a00118afff *man/votingLinearPredictor.Rd
79b4e6437c1c28ffca58a9127550d161 *src/Makevars
22d54f2b9dc56c83bb08fc083227e3fd *src/Makevars.win
6005bf04d786e50fe8d0cd9295301f68 *src/array.h
c2928611d219dcd71e6693d0a83083ff *src/arrayGeneric.h
9325eb75f2dbcd496f707012da9a7451 *src/compiling.h
da8325a366e08e9550fc94a0098e263f *src/corFunctions-common.c
dc75dbffa9eb5cc4cab09d05c4d3e8d7 *src/corFunctions-common.h
895318610c787d0be2d05e8fed5a8929 *src/corFunctions-unified.c
8cdd38cea04502f7d414ed5de15745ba *src/corFunctions.h
5ce06b070466f09b11f2745166ab226a *src/exceptions.h
aac73afc4646ddd0ae65abed858b5ea6 *src/networkFunctions.c
0107b9e6c02ccc940a4894b0a34d473d *src/pivot.c
84a3d30c96ad4be6d0c078218cc734d4 *src/pivot.h
ab1077bce96ac5efbce3a11a48f930a8 *src/quantileC.cc
