076d6cc1e6386c393b8ec6afa378a5a4 *Changelog
d4f24071f402cb08f9ddfbe1de3821a5 *DESCRIPTION
970fd32521fb5ab965eeec686834d06b *NAMESPACE
2640fb7286cab45b6de425c01109f80e *R/AFcorMI.R
ea14a2a861b238bbb31d9f54117b7fdb *R/Functions-fromSimilarity.R
5e84a6ce02b260e085f01a344754a9d3 *R/Functions-modColor.R
f0a23a7cf2d4b05f06b2b1dbe29eeb21 *R/Functions-multiData.R
40d06973ebe277554ae8a9e153f37f2c *R/Functions.R
57afc307ea8a1b50f75919d6c7e5b2b2 *R/GOenrichmentAnalysis.R
e6176144fa33412715511440dd00bc1f *R/TrueTrait.R
50c27773dba239d58f6c42dbff46a944 *R/accuracyMeasures.R
6694f89a89e904eb1bc90d28cf28fc37 *R/adjacency.polyReg.R
3cc995eb826b701ba4d3a7bf6ad64a3a *R/adjacency.splineReg.R
58bd3b109d94272772fa6d5d39200b20 *R/blockwiseModulesC.R
15468ef5e298f2fdb6320a53fe144051 *R/coClustering.R
ceee787204a986fedae3e8b3ce86d121 *R/collapseRows.R
93b1234770b325950074537bc2aad873 *R/collapseRowsUsingKME.R
46a73fe3580e01ceab1bdcb55c316c3c *R/conformityDecomposition.R
ba86cd4c5ea1b5da97813643852b9b7e *R/consensusDissTOMandTree.R
239273bfb01626e6a7a6ea7eb966bca7 *R/corAndPvalue.R
f770e1d7d5d042f13fe64809e12cd5a4 *R/corFunctions.R
f5dfb236765806a3eb39bd028bff071b *R/coxRegressionResiduals.R
aa9c7ff1a228742079e2cbd4a1f4c28e *R/dendrogramAdjustmentFunctions.R
a8d6c9153283aef82a2f791dff6cb521 *R/exportFunctions.R
269a880a70d3e9841f1f5c35818e4253 *R/heatmapWithLegend.R
56b90422530e57a60e3806324b27a1bc *R/internalConstants.R
da2729744a42bda91cc02ddf3714a612 *R/kMEcomparisonScatterplot.R
11de7ae02e23f7e0b8fb1881cbcc214b *R/labelPoints.R
96d5aa01119759627ed62e38c14cd8cb *R/matchLabels.R
de5a35825d9b736b61c515ebee717d25 *R/moduleMergeUsingKME.R
d381176813713a8f92fdd7584e8df4cf *R/modulePreservation.R
d96c4db72edd76ecee257f03f3743c3e *R/mutualInfoAdjacency.R
b92717ee22aa436149b7a048d0f14720 *R/nearestCentroidPredictor.R
ff247c78f289e887d88ea719e482e2ee *R/networkConcepts.R
cbbf15f7e1af46c97769349028dcc197 *R/overlapTableUsingKME.R
1f84c828572b06bc6baf3ad5df077b99 *R/populationMeansInAdmixture.R
b9031c27dab6ce4d7c4e320a5d921234 *R/pquantile.R
1c35495264dc245f0c417f2797d649c1 *R/proportionsInAdmixture.R
e6f219281c915629a9e716bf133e304f *R/quantileC.R
0f6a00ada5b99112e8dadea807aa2a00 *R/qvalue.R
42cde3295452b6769fd404c9042385c8 *R/randomGLMpredictor.R
69f368afdd00a44008445ba5d90cdd6b *R/returnGeneSetsAsList.R
ccc79bd4eb6ee39d21d38293b67c0287 *R/smaFunctions-Rna.R
f87924d7f12e5bc286821069abd5101e *R/smaFunctions.R
101bc6f0e31a5343456b98ccfb1ce6cb *R/standardScreeningBinaryTrait.R
f20cae9009e6bca9e4f19328f17a229f *R/stratifiedBarplot.R
838bed5c4cbe28e4c942be6e9ca537ac *R/transposeBigData.R
13c6d6b0bfa712c52f97b62c046be200 *R/useNThreads.R
651691952d0f16d6816cbd783943b622 *R/userListEnrichment.R
42a7d01f9a9dd9111fe1fdc42d4c7e26 *R/verboseIplot.R
7b96c0b753dc5edf84f0cb29887d4857 *R/votingLinearPredictor.R
60cadb76d631c92423aa1ca9fc354c4e *R/zzz.R
f403f840e0fc7f8a0c352107793e0b46 *data/BloodLists.rda
51c2c6e860d1506d66e9b65c524453be *data/BrainLists.rda
7bdbaf29df66b5302497c33719d384ae *data/BrainRegionMarkers.rda
ad0ed9fc9a81c1b69c0b2866967a112b *data/ImmunePathwayLists.rda
c6e9fa3b41671b6ad31df708e1a013ff *data/SCsLists.rda
2ecf550fdec051c8f06bd01233cef6b5 *inst/CITATION
1395f9a0fa5ae4ae4d33450dd978bf20 *man/AFcorMI.Rd
90e62d285af393b1c3598dca8b5e4901 *man/BloodLists.Rd
2692449a2600292b3b10f07bfa70010d *man/BrainLists.Rd
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ce3e8c0fd95f1b1bd456453e80486cd2 *man/GOenrichmentAnalysis.Rd
4de45938151062d0afaa35fbebd71074 *man/GTOMdist.Rd
71782d3e2e09a394a6a512b4069e1434 *man/ImmunePathwayLists.Rd
a1c383c7c833d5d3e336f02b5fead2f6 *man/SCsLists.Rd
25b979522bb3b52ee08f7c016eaf9b57 *man/TOMplot.Rd
674cff64a1778713173951060078736c *man/TOMsimilarity.Rd
502131e33c1e9b1c66d48d90aba59b22 *man/TOMsimilarityFromExpr.Rd
8c91bdaacadbd7ec2c307ca32191cbbe *man/TrueTrait.Rd
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2703e1c680bae62e4c5aaecdcfbbd424 *man/addGrid.Rd
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8d7d42ffe2f393ffc0639eb753269012 *man/addTraitToMEs.Rd
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c7e701229b5800c1413850f3adf86a3c *man/alignExpr.Rd
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b7ea7d2217d2af07fb52698036093d99 *man/allowWGCNAThreads.Rd
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37f7ceee377056bc41dfc56146e44c22 *man/automaticNetworkScreeningGS.Rd
1117412198085a1e2ef0513c1468fec1 *man/bicor.Rd
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72f6e319575002bf31f2be58d0f79903 *man/blockSize.Rd
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6da7cc9f05a599ed9f9e634b87644d4c *man/blockwiseModules.Rd
7de45e730f52e3ea215e128fc0831e32 *man/blueWhiteRed.Rd
a670b576a031c5f51483aedd991e2cb3 *man/checkAdjMat.Rd
77c7d5fb58a8ec83f99ffbd83d4481dd *man/checkSets.Rd
3db1096bab6aea2c8dc93423b5012152 *man/chooseOneHubInEachModule.Rd
2768d75029b955aa7f3f0734c01f474c *man/chooseTopHubInEachModule.Rd
5e958f0875508a71d357444f14b6179e *man/clusterCoef.Rd
a4dee3d59f71f9271fef45dbc884e50c *man/coClustering.Rd
39432228084e0ab40e2bdfba1971ef2d *man/coClustering.permutationTest.Rd
bfc146c70e960b9dd0332e758fc4c4a2 *man/colQuantileC.Rd
4c084cc6c7c2586c1668bd5efe05ccf2 *man/collapseRows.Rd
36c92b8ae3dddd0ce0cf42916b20b47c *man/collapseRowsUsingKME.Rd
e3f8541b1a35d25d0767fca0ecd2a2b3 *man/collectGarbage.Rd
161399055c32a9010d1311b4987249b8 *man/conformityBasedNetworkConcepts.Rd
f02e1252a1f127594ba501f14727ad6d *man/conformityDecomposition.Rd
8cdeebac2a94ffacb18c92fb6e527950 *man/consensusDissTOMandTree.Rd
4c15b83e54f347c1b17a19530c169d74 *man/consensusKME.Rd
b7894dd42a2601088dca9dea50eff843 *man/consensusMEDissimilarity.Rd
171634ec94492cd2a68a284c88329b68 *man/consensusOrderMEs.Rd
dab0f9668d35ff557fb59dadb7f3b3fe *man/consensusProjectiveKMeans.Rd
a48049fdde6a64fd5b4ebb55f508d24c *man/cor.Rd
816782162c19cddf11f637162f4cb0dc *man/corAndPvalue.Rd
19cd6ac7f5c9891b6f6be8fd4034f484 *man/corPredictionSuccess.Rd
ddd90d6b54aac459bd8af75db5f5e8a6 *man/corPvalueFisher.Rd
087446ede74deb76c5952eab930bcc3d *man/corPvalueStudent.Rd
c52e6fc1e3b1b5bb616681de0984d7b5 *man/correlationPreservation.Rd
06d6988c8a2b30e720ed769496a5573a *man/coxRegressionResiduals.Rd
ebd1b5154444b4b1ddb110a91453596d *man/cutreeStatic.Rd
76d1215fee27707480cb5b2bb4436754 *man/cutreeStaticColor.Rd
aa9a53d1eeea331b86022a2f85238b9d *man/displayColors.Rd
ec2017b186d25a4707f66d4069f3f18c *man/dynamicMergeCut.Rd
786230c8ae039c2c8747099158c380a7 *man/exportNetworkToCytoscape.Rd
39527ac4d9254ef2e92e5cd3e5fb101c *man/exportNetworkToVisANT.Rd
4f2aee2616cd6c8a62a69753510b8911 *man/fixDataStructure.Rd
a0878ec86150188ec97abfc2a3533b2e *man/fundamentalNetworkConcepts.Rd
5c4e293339f4d303fa68625fbaf5952f *man/goodGenes.Rd
e2d2e6eefbf8941f35be2cfc916d02cf *man/goodGenesMS.Rd
afbfd5c284ce86c6e75f95f2dfc0c929 *man/goodSamples.Rd
d3fe65a668dce150a0c08f604a10bdf0 *man/goodSamplesGenes.Rd
870fa35d0dc4771426a101e5742d2312 *man/goodSamplesGenesMS.Rd
23decbc236061c9afe2727ebb9cb4abc *man/goodSamplesMS.Rd
c32af802f17f6a13a8d1f9022269b151 *man/greenBlackRed.Rd
557c9bef232a943268f060c32c6eb87f *man/greenWhiteRed.Rd
1282dbf2291264f8c714ba10c3c93b33 *man/hubGeneSignificance.Rd
8da1468122c8ccf215f433015137e389 *man/initProgInd.Rd
d199088b5c80bfb44a87d682b18774ca *man/intramodularConnectivity.Rd
32d5ef81ec3c397542a9bec9dab1256c *man/kMEcomparisonScatterplot.Rd
367c8efa7aff57c91f508f4d6993ee0c *man/keepCommonProbes.Rd
6010a755c65251e7343c26d478a00502 *man/labelPoints.Rd
4ed4ad8fb3eefb8fb3ebc018d50f24c1 *man/labeledBarplot.Rd
7baaa1b8c296a26530aacb143101501d *man/labeledHeatmap.Rd
4bbe76c64e465dd5d480f649370d8c31 *man/labels2colors.Rd
5ed84fabbd891e85b12619f3530492c8 *man/lowerTri2matrix.Rd
5257dea14695c56e26d792717a89de29 *man/matchLabels.Rd
caad2f4cd29ed55a6c2ff090d7090ecb *man/matrixToNetwork.Rd
89df48f7f0111ce50d56bd71e75b0982 *man/mergeCloseModules.Rd
50529471afd7336184fa7963507eaa5f *man/metaAnalysis.Rd
ffd97d40240349925bc44f5b1906d3e5 *man/metaZfunction.Rd
7edcdce8f159ca0dfa75c6381c252900 *man/moduleColor.getMEprefix.Rd
cadbc62207509c337b6a361997f5aff5 *man/moduleEigengenes.Rd
dafa516728183fa7d7491fb21825015c *man/moduleMergeUsingKME.Rd
271eded401e01f0e1e330f34d33afe22 *man/moduleNumber.Rd
6b6a375e70a03b16e70e60490ec4aa2b *man/modulePreservation.Rd
76676f3fdba6e9ca1d4ddccc3cc70fe9 *man/multiData.eigengeneSignificance.Rd
3330adb50056906610014dbe4a210cde *man/multiSetMEs.Rd
48e967e0860b3cc1c76153807fe77b24 *man/mutualInfoAdjacency.Rd
423948deb1875655f76b5aab3bd18ff3 *man/nPresent.Rd
5a9944c4bcd3dd9111df6d32dca279c1 *man/nSets.Rd
4e2609e6187beae39db8439877b6c2b4 *man/na.Rd
f254d52b87268800ff55ac2372a1a308 *man/nearestCentroidPredictor.Rd
f3528eca336b9c278d84c2226ac5e946 *man/nearestNeighborConnectivity.Rd
9de47712cf569e3de94cfff5f17a72ea *man/nearestNeighborConnectivityMS.Rd
3982e0f77862c8c9993a49f878258fda *man/networkConcepts.Rd
9b0d99621400d82fee9c9a34dde5c5eb *man/networkScreening.Rd
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00521be977eaaa72457d4ee52ab407cb *man/normalizeLabels.Rd
3487d374af60f914a7674bdca219b1d6 *man/numbers2colors.Rd
b52297e6d60f6324d9c7195391504d0f *man/orderBranchesUsingHubGenes.Rd
6dec40376ce19b7cc0d0d8d2ac3d25a6 *man/orderMEs.Rd
e945ae00f5c6522afe73b2d9106f4a26 *man/overlapTable.Rd
998217fb69c710058793e302823f9ab2 *man/overlapTableUsingKME.Rd
510ec68b075cbd5801c34f67c71aa541 *man/pickHardThreshold.Rd
2a10bff35efd2823948952eea949b8e9 *man/pickSoftThreshold.Rd
f2fbb9c15f4fdeeffdf507bbe806b077 *man/plotClusterTreeSamples.Rd
34ca3f349ff3688b714a47336574c71b *man/plotColorUnderTree.Rd
7d497231fea98cce2f40f9016d26c350 *man/plotCor.Rd
396eba681b822790d9d3656d094498d7 *man/plotDendroAndColors.Rd
8ee0e2fdd85ddb8c17db4aa1730bd38a *man/plotEigengeneNetworks.Rd
f66707ae89f83b6b3813ade2a347c305 *man/plotMEpairs.Rd
94e7429dc00dde611d83d126ffc58bf6 *man/plotMat.Rd
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df0a200d8b0404a897490031b0ee24b9 *man/plotNetworkHeatmap.Rd
265ae07739aea9d9b5c1f6009db6bd99 *man/populationMeansInAdmixture.Rd
61fea614527a8b691118e31a7f4130b4 *man/pquantile.Rd
98a05e761090162822158e0c290ffd30 *man/prepComma.Rd
638576053aa6de4e1d9bd76f17cd417c *man/preservationNetworkConnectivity.Rd
335962ac3445b6b6c456b0cf45327859 *man/projectiveKMeans.Rd
6cd6c33ac81666fee9ab2934c15f14d1 *man/propVarExplained.Rd
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e8c0717cae5f64d23fcc6d7ab07908d7 *man/rankPvalue.Rd
01a45316c04f8464298b4546ab222807 *man/recutBlockwiseTrees.Rd
6a716a348019d9c4e0043d0322933287 *man/recutConsensusTrees.Rd
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337af1487821999b4adf9b267472449e *man/relativeCorPredictionSuccess.Rd
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6a79360f6ec29c84aeb933bc46b4ff91 *man/scaleFreeFitIndex.Rd
6af16d36f52d742261e34c9bb34cd570 *man/scaleFreePlot.Rd
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9cce33e7a075bc301deb614f4f23b8ed *man/sigmoidAdjacencyFunction.Rd
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17da3078480f388b98a1fcde5baeb206 *man/vectorTOM.Rd
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5b60605817816b91df09d8a00118afff *man/votingLinearPredictor.Rd
79b4e6437c1c28ffca58a9127550d161 *src/Makevars
22d54f2b9dc56c83bb08fc083227e3fd *src/Makevars.win
7628d4607d92aad57bdd1de8b8525154 *src/array.h
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9325eb75f2dbcd496f707012da9a7451 *src/compiling.h
c3966f1ec94c69912c74f3d03b4fa809 *src/corFunctions-common.c
dc75dbffa9eb5cc4cab09d05c4d3e8d7 *src/corFunctions-common.h
895318610c787d0be2d05e8fed5a8929 *src/corFunctions-unified.c
8cdd38cea04502f7d414ed5de15745ba *src/corFunctions.h
5ce06b070466f09b11f2745166ab226a *src/exceptions.h
80e69d5a92ad7d3f8562658e9362c80a *src/networkFunctions.c
0107b9e6c02ccc940a4894b0a34d473d *src/pivot.c
84a3d30c96ad4be6d0c078218cc734d4 *src/pivot.h
ab1077bce96ac5efbce3a11a48f930a8 *src/quantileC.cc
