7e61d4bd053876f28362068f3118d738 *Changelog
1fe56a5588e0365ba7e0e85dd30b2382 *DESCRIPTION
7a48776b65a8a23e1ea825cc6e040b83 *NAMESPACE
2640fb7286cab45b6de425c01109f80e *R/AFcorMI.R
ea14a2a861b238bbb31d9f54117b7fdb *R/Functions-fromSimilarity.R
f0a23a7cf2d4b05f06b2b1dbe29eeb21 *R/Functions-multiData.R
553af747ef38b114b506a81e21f8a945 *R/Functions.R
bb535d83a367bb2dd829521fe1767e7e *R/GOenrichmentAnalysis.R
a741dd19796b763560aba5d13f00fc48 *R/TrueTrait.R
3747f2e4a71105d8e3ac4c54914b6bd4 *R/accuracyMeasures.R
6694f89a89e904eb1bc90d28cf28fc37 *R/adjacency.polyReg.R
3532a8d0c9e1ea87935747498e952c75 *R/adjacency.splineReg.R
6821a9db3e8859f11f8c9bfadcee1150 *R/blockwiseModulesC.R
57c87e3eac0ecd73b4687f86afad1952 *R/branchSplit.R
243735278d3c1064b21aed2c78fb67d3 *R/bucketOrder.R
15468ef5e298f2fdb6320a53fe144051 *R/coClustering.R
ceee787204a986fedae3e8b3ce86d121 *R/collapseRows.R
93b1234770b325950074537bc2aad873 *R/collapseRowsUsingKME.R
46a73fe3580e01ceab1bdcb55c316c3c *R/conformityDecomposition.R
02dab22b7430423c18deb9490fee4172 *R/consensusDissTOMandTree.R
8db7bde716e37404963e7a43114f6bfd *R/consensusTOM.R
239273bfb01626e6a7a6ea7eb966bca7 *R/corAndPvalue.R
c098bc97e04a191c1ffb419ab71b7209 *R/corFunctions.R
f5dfb236765806a3eb39bd028bff071b *R/coxRegressionResiduals.R
aa9c7ff1a228742079e2cbd4a1f4c28e *R/dendrogramAdjustmentFunctions.R
45d9404d33ad36d68a1efc40cf3e9560 *R/empiricalBayesLM.R
189b8511440c0ada06cf0e91abd56db8 *R/exportFunctions.R
98107324ea4a05b9647740f0df1146c5 *R/heatmapWithLegend.R
56b90422530e57a60e3806324b27a1bc *R/internalConstants.R
da2729744a42bda91cc02ddf3714a612 *R/kMEcomparisonScatterplot.R
11de7ae02e23f7e0b8fb1881cbcc214b *R/labelPoints.R
27ff058e01ec435cc860773af8eb8ddd *R/matchLabels.R
de5a35825d9b736b61c515ebee717d25 *R/moduleMergeUsingKME.R
9109e9435fdf98a12d4912982fa90f13 *R/modulePreservation.R
724b41f8ef67ccda9736a1b770081459 *R/multiData.R
d96c4db72edd76ecee257f03f3743c3e *R/mutualInfoAdjacency.R
f01e9b205225218592759842ec81a61a *R/nearestCentroidPredictor.R
ff247c78f289e887d88ea719e482e2ee *R/networkConcepts.R
cbbf15f7e1af46c97769349028dcc197 *R/overlapTableUsingKME.R
1f84c828572b06bc6baf3ad5df077b99 *R/populationMeansInAdmixture.R
b9031c27dab6ce4d7c4e320a5d921234 *R/pquantile.R
1c35495264dc245f0c417f2797d649c1 *R/proportionsInAdmixture.R
4d095a148b0da354b9f04df2b92c5ed0 *R/quantileC.R
0f6a00ada5b99112e8dadea807aa2a00 *R/qvalue.R
69f368afdd00a44008445ba5d90cdd6b *R/returnGeneSetsAsList.R
101bc6f0e31a5343456b98ccfb1ce6cb *R/standardScreeningBinaryTrait.R
f20cae9009e6bca9e4f19328f17a229f *R/stratifiedBarplot.R
838bed5c4cbe28e4c942be6e9ca537ac *R/transposeBigData.R
bca08e28ce5bd648fe151e8927a04e60 *R/useNThreads.R
e3b8d1a62e917f2ef98ca12d80b28247 *R/userListEnrichment.R
42a7d01f9a9dd9111fe1fdc42d4c7e26 *R/verboseIplot.R
9fb8ae431795a46628ae79049344a17d *R/votingLinearPredictor.R
60cadb76d631c92423aa1ca9fc354c4e *R/zzz.R
f403f840e0fc7f8a0c352107793e0b46 *data/BloodLists.rda
51c2c6e860d1506d66e9b65c524453be *data/BrainLists.rda
7bdbaf29df66b5302497c33719d384ae *data/BrainRegionMarkers.rda
ad0ed9fc9a81c1b69c0b2866967a112b *data/ImmunePathwayLists.rda
fbe597b58e5ece1cfb445339988bd936 *data/PWLists.rda
c6e9fa3b41671b6ad31df708e1a013ff *data/SCsLists.rda
2ecf550fdec051c8f06bd01233cef6b5 *inst/CITATION
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2692449a2600292b3b10f07bfa70010d *man/BrainLists.Rd
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8c7d3bbf8ea375ebdd7c50d47d27c663 *man/GOenrichmentAnalysis.Rd
4de45938151062d0afaa35fbebd71074 *man/GTOMdist.Rd
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21b4631827ab613c08045a398a0145f7 *man/PWLists.Rd
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25b979522bb3b52ee08f7c016eaf9b57 *man/TOMplot.Rd
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21b9aa92bf787c203518a52b9fc4c486 *man/TrueTrait.Rd
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37f7ceee377056bc41dfc56146e44c22 *man/automaticNetworkScreeningGS.Rd
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1917f9fa9c34e8a04107127e89ef72f8 *man/bicovWeights.Rd
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6c77cf6c04f40696f0a0c508cc0a8c14 *man/branchEigengeneDissim.Rd
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8d2d56cc83df450d9eee3fdc3b00a755 *man/branchSplitFromStabilityLabels.Rd
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77c7d5fb58a8ec83f99ffbd83d4481dd *man/checkSets.Rd
277982294fa31dbbdf5945da95b5da25 *man/chooseOneHubInEachModule.Rd
2a26b1007bb5bfe78c8f9a1462d97011 *man/chooseTopHubInEachModule.Rd
5e958f0875508a71d357444f14b6179e *man/clusterCoef.Rd
a4dee3d59f71f9271fef45dbc884e50c *man/coClustering.Rd
39432228084e0ab40e2bdfba1971ef2d *man/coClustering.permutationTest.Rd
19f842891bb0622d9d2964a968467136 *man/colQuantileC.Rd
4c084cc6c7c2586c1668bd5efe05ccf2 *man/collapseRows.Rd
36c92b8ae3dddd0ce0cf42916b20b47c *man/collapseRowsUsingKME.Rd
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161399055c32a9010d1311b4987249b8 *man/conformityBasedNetworkConcepts.Rd
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8cdeebac2a94ffacb18c92fb6e527950 *man/consensusDissTOMandTree.Rd
93fda8ed22a27fc908998bb2086ef739 *man/consensusKME.Rd
b7894dd42a2601088dca9dea50eff843 *man/consensusMEDissimilarity.Rd
171634ec94492cd2a68a284c88329b68 *man/consensusOrderMEs.Rd
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f825af557a042d3d1a13c7136c73be25 *man/cor.Rd
816782162c19cddf11f637162f4cb0dc *man/corAndPvalue.Rd
19cd6ac7f5c9891b6f6be8fd4034f484 *man/corPredictionSuccess.Rd
ddd90d6b54aac459bd8af75db5f5e8a6 *man/corPvalueFisher.Rd
087446ede74deb76c5952eab930bcc3d *man/corPvalueStudent.Rd
c52e6fc1e3b1b5bb616681de0984d7b5 *man/correlationPreservation.Rd
06d6988c8a2b30e720ed769496a5573a *man/coxRegressionResiduals.Rd
ebd1b5154444b4b1ddb110a91453596d *man/cutreeStatic.Rd
76d1215fee27707480cb5b2bb4436754 *man/cutreeStaticColor.Rd
aa9a53d1eeea331b86022a2f85238b9d *man/displayColors.Rd
ec2017b186d25a4707f66d4069f3f18c *man/dynamicMergeCut.Rd
a79689ab886a4ccb8a839829cbe83255 *man/empiricalBayesLM.Rd
46e29dcd87c583e3d449493600141016 *man/exportNetworkToCytoscape.Rd
932f2ec52d299afe70b469264398fa27 *man/exportNetworkToVisANT.Rd
4f2aee2616cd6c8a62a69753510b8911 *man/fixDataStructure.Rd
1d9439e01fb97dbdb71ee002b8b55437 *man/formatLabels.Rd
a0878ec86150188ec97abfc2a3533b2e *man/fundamentalNetworkConcepts.Rd
5c4e293339f4d303fa68625fbaf5952f *man/goodGenes.Rd
e2d2e6eefbf8941f35be2cfc916d02cf *man/goodGenesMS.Rd
afbfd5c284ce86c6e75f95f2dfc0c929 *man/goodSamples.Rd
d3fe65a668dce150a0c08f604a10bdf0 *man/goodSamplesGenes.Rd
870fa35d0dc4771426a101e5742d2312 *man/goodSamplesGenesMS.Rd
23decbc236061c9afe2727ebb9cb4abc *man/goodSamplesMS.Rd
c32af802f17f6a13a8d1f9022269b151 *man/greenBlackRed.Rd
557c9bef232a943268f060c32c6eb87f *man/greenWhiteRed.Rd
1282dbf2291264f8c714ba10c3c93b33 *man/hubGeneSignificance.Rd
b2ddece70167d37c6ca795c56c6bbf51 *man/initProgInd.Rd
cda01d69dfff3eef4fcb79ce7119585f *man/intramodularConnectivity.Rd
500667bd49d01613aaaf03cd9831b042 *man/isMultiData.Rd
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367c8efa7aff57c91f508f4d6993ee0c *man/keepCommonProbes.Rd
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4ed4ad8fb3eefb8fb3ebc018d50f24c1 *man/labeledBarplot.Rd
017734e755aa76b869f9e0ffff437c7f *man/labeledHeatmap.Rd
458929d8c85dd459e52091baf5f1b1bd *man/labeledHeatmap.multiPage.Rd
4bbe76c64e465dd5d480f649370d8c31 *man/labels2colors.Rd
7fc163ef52818f5539648901398c4449 *man/list2multiData.Rd
5ed84fabbd891e85b12619f3530492c8 *man/lowerTri2matrix.Rd
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caad2f4cd29ed55a6c2ff090d7090ecb *man/matrixToNetwork.Rd
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50529471afd7336184fa7963507eaa5f *man/metaAnalysis.Rd
ffd97d40240349925bc44f5b1906d3e5 *man/metaZfunction.Rd
7edcdce8f159ca0dfa75c6381c252900 *man/moduleColor.getMEprefix.Rd
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271eded401e01f0e1e330f34d33afe22 *man/moduleNumber.Rd
2959dd49093ba6bbf2de6a0118bc9291 *man/modulePreservation.Rd
c6f0d7ed6ba44a899c2caba17db3d06f *man/mtd.apply.Rd
ae9dfd2181ad34cedaf894a1778b30ff *man/mtd.mapply.Rd
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a7f9d8df53a7f26a59b90e79abd259a7 *man/mtd.setAttr.Rd
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1581863c1819ad12e588ad03f592af63 *man/mtd.subset.Rd
2728b2005265bff56411d862d9960e81 *man/multiData.Rd
76676f3fdba6e9ca1d4ddccc3cc70fe9 *man/multiData.eigengeneSignificance.Rd
3330adb50056906610014dbe4a210cde *man/multiSetMEs.Rd
9006d4cf6446d835d0c8c3bd9d3c72e7 *man/multiUnion.Rd
67f393ca0f70989e332b083e14673a64 *man/mutualInfoAdjacency.Rd
423948deb1875655f76b5aab3bd18ff3 *man/nPresent.Rd
5a9944c4bcd3dd9111df6d32dca279c1 *man/nSets.Rd
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9ba4ff24a88a7d6bc72960f6d5bead4b *man/overlapTable.Rd
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3293cecd4d3f5f802361270b9dc23be9 *man/plotClusterTreeSamples.Rd
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df0a200d8b0404a897490031b0ee24b9 *man/plotNetworkHeatmap.Rd
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61fea614527a8b691118e31a7f4130b4 *man/pquantile.Rd
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28fedfc9d88f99715180802aad1bc919 *man/transposeBigData.Rd
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17da3078480f388b98a1fcde5baeb206 *man/vectorTOM.Rd
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52fe526b73ca75dc64f24bf45b2daba7 *man/verboseBarplot.Rd
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5b60605817816b91df09d8a00118afff *man/votingLinearPredictor.Rd
79b4e6437c1c28ffca58a9127550d161 *src/Makevars
22d54f2b9dc56c83bb08fc083227e3fd *src/Makevars.win
3a8a0654878ed254fbe0f76ca1cfcda9 *src/array.h
c8de6e0086d891a82305d064cb7214f0 *src/arrayGeneric.h
56ed4aa795b68d08aad7eaea15feb07e *src/bucketApproxSort.cc
9325eb75f2dbcd496f707012da9a7451 *src/compiling.h
aa4724671bc6c19fd24aacaacaa27efe *src/corFunctions-common.c
798cb2787af51fc68ff7b7866b5e47bc *src/corFunctions-common.h
0a66283fdae8d0f26351c15d32ef5f48 *src/corFunctions-unified.c
8cdd38cea04502f7d414ed5de15745ba *src/corFunctions.h
5ce06b070466f09b11f2745166ab226a *src/exceptions.h
142da3e9e39eaaf676ae707d09fb0947 *src/networkFunctions.c
8a311b9e058f31ebf92eb5c71fb5f8c9 *src/pivot.c
fefd494ce5d65833cb7029b1be8134f1 *src/pivot.h
518269ab12f919617a4fe588f1df9f58 *src/quantileC.cc
