1ab557ab0b199d7a5a78b3fb353d7d56 *Changelog
4afda6dd5dfae51c77d62f559f5de050 *DESCRIPTION
f910de2dfb54ed572d2b2842ed53f80c *NAMESPACE
2640fb7286cab45b6de425c01109f80e *R/AFcorMI.R
52127eb669cb64a9c916fff9200fcb0a *R/Functions-fromSimilarity.R
f0a23a7cf2d4b05f06b2b1dbe29eeb21 *R/Functions-multiData.R
63a598b89d779b390fd6a01055b94fda *R/Functions.R
b042b30d8f5d4721298fb105a49bd369 *R/GOenrichmentAnalysis.R
a741dd19796b763560aba5d13f00fc48 *R/TrueTrait.R
3747f2e4a71105d8e3ac4c54914b6bd4 *R/accuracyMeasures.R
6694f89a89e904eb1bc90d28cf28fc37 *R/adjacency.polyReg.R
3532a8d0c9e1ea87935747498e952c75 *R/adjacency.splineReg.R
7dc920318959f0b951ca0821cb847907 *R/blockwiseData.R
a77c8b888872673d95e497a4946c019f *R/blockwiseModulesC.R
f0fe6229bc66753b130696f9f9b0d6d8 *R/branchSplit.R
15468ef5e298f2fdb6320a53fe144051 *R/coClustering.R
ceee787204a986fedae3e8b3ce86d121 *R/collapseRows.R
93b1234770b325950074537bc2aad873 *R/collapseRowsUsingKME.R
46a73fe3580e01ceab1bdcb55c316c3c *R/conformityDecomposition.R
2906f890cbd508694ef183c3fd5c7e1a *R/consensusCalculations.R
02dab22b7430423c18deb9490fee4172 *R/consensusDissTOMandTree.R
6a3752172cc4c31d53eec0cdc1463ea7 *R/consensusRepresentatives.R
fe08c4af47f46acd075082eafb00f634 *R/consensusTOM.R
239273bfb01626e6a7a6ea7eb966bca7 *R/corAndPvalue.R
ae38c4a3af8cf6f039c093f158c8be75 *R/corFunctions.R
f5dfb236765806a3eb39bd028bff071b *R/coxRegressionResiduals.R
aa9c7ff1a228742079e2cbd4a1f4c28e *R/dendrogramAdjustmentFunctions.R
201ca197e87d90d86847a4ecbfea9088 *R/empiricalBayesLM.R
189b8511440c0ada06cf0e91abd56db8 *R/exportFunctions.R
5e4be85b18d1cd4047b1f50814173139 *R/heatmapWithLegend.R
6a714ec52e2bfa8549e8051177a363ea *R/hierarchicalConsensusModules.R
e4a9b962ea9955a5becb94b42929d717 *R/internalConstants.R
da2729744a42bda91cc02ddf3714a612 *R/kMEcomparisonScatterplot.R
9ad0513b5a21e56e67fba7c9b9647d3d *R/labelPoints.R
c4bbf0eec5c48beb6b66053f66cfd335 *R/matchLabels.R
de5a35825d9b736b61c515ebee717d25 *R/moduleMergeUsingKME.R
1c73c0e3011caa94097182ed9920e90f *R/modulePreservation.R
dbd00cc0838fdeb1aa724e950b205b03 *R/multiData.R
d96c4db72edd76ecee257f03f3743c3e *R/mutualInfoAdjacency.R
f01e9b205225218592759842ec81a61a *R/nearestCentroidPredictor.R
ff247c78f289e887d88ea719e482e2ee *R/networkConcepts.R
cbbf15f7e1af46c97769349028dcc197 *R/overlapTableUsingKME.R
dd248a6dbff1e165b81e4a55f5ba35e9 *R/plotDendrogram.R
1f84c828572b06bc6baf3ad5df077b99 *R/populationMeansInAdmixture.R
1c35495264dc245f0c417f2797d649c1 *R/proportionsInAdmixture.R
f17cfef92906bb48ef2d09a25a8b57c4 *R/quantileC.R
0f6a00ada5b99112e8dadea807aa2a00 *R/qvalue.R
69f368afdd00a44008445ba5d90cdd6b *R/returnGeneSetsAsList.R
7a9e4d431b89e8da319b6935e4e165b2 *R/sampledModules.R
9150985fe60317f9ad20f66cacaf7170 *R/smaFunctions.R
e7af15046afab56942ec17ef97e4661c *R/standardScreeningBinaryTrait.R
f20cae9009e6bca9e4f19328f17a229f *R/stratifiedBarplot.R
838bed5c4cbe28e4c942be6e9ca537ac *R/transposeBigData.R
8603738eadb272fa798eb71c9cb173df *R/useNThreads.R
e3b8d1a62e917f2ef98ca12d80b28247 *R/userListEnrichment.R
42a7d01f9a9dd9111fe1fdc42d4c7e26 *R/verboseIplot.R
9fb8ae431795a46628ae79049344a17d *R/votingLinearPredictor.R
60cadb76d631c92423aa1ca9fc354c4e *R/zzz.R
f403f840e0fc7f8a0c352107793e0b46 *data/BloodLists.rda
51c2c6e860d1506d66e9b65c524453be *data/BrainLists.rda
7bdbaf29df66b5302497c33719d384ae *data/BrainRegionMarkers.rda
ad0ed9fc9a81c1b69c0b2866967a112b *data/ImmunePathwayLists.rda
fbe597b58e5ece1cfb445339988bd936 *data/PWLists.rda
c6e9fa3b41671b6ad31df708e1a013ff *data/SCsLists.rda
2ecf550fdec051c8f06bd01233cef6b5 *inst/CITATION
1395f9a0fa5ae4ae4d33450dd978bf20 *man/AFcorMI.Rd
6d8f05dde0ca15ee026da0f8c32b791e *man/BD.getData.Rd
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2692449a2600292b3b10f07bfa70010d *man/BrainLists.Rd
65c0bd53eec8c8d582497e48fdc09497 *man/BrainRegionMarkers.Rd
c8562c092b61e998696d2eda7e89ae33 *man/GOenrichmentAnalysis.Rd
4de45938151062d0afaa35fbebd71074 *man/GTOMdist.Rd
71782d3e2e09a394a6a512b4069e1434 *man/ImmunePathwayLists.Rd
21b4631827ab613c08045a398a0145f7 *man/PWLists.Rd
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25b979522bb3b52ee08f7c016eaf9b57 *man/TOMplot.Rd
31221a58073381cdc0ff5b6059594bcb *man/TOMsimilarity.Rd
0153d62743c9f895b45e99db4f02d84d *man/TOMsimilarityFromExpr.Rd
21b9aa92bf787c203518a52b9fc4c486 *man/TrueTrait.Rd
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2703e1c680bae62e4c5aaecdcfbbd424 *man/addGrid.Rd
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8d7d42ffe2f393ffc0639eb753269012 *man/addTraitToMEs.Rd
ef869aa22f5579c0721fc58bcdce0782 *man/adjacency.Rd
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2ce0f3f36981f2e361fee7ae835ce24e *man/adjacency.splineReg.Rd
c7e701229b5800c1413850f3adf86a3c *man/alignExpr.Rd
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b7ea7d2217d2af07fb52698036093d99 *man/allowWGCNAThreads.Rd
f0af93e682c1e4f9ed671d5dc26b5c47 *man/automaticNetworkScreening.Rd
37f7ceee377056bc41dfc56146e44c22 *man/automaticNetworkScreeningGS.Rd
9d5ef23d09c8ad31a581439ce9a45921 *man/bicor.Rd
93111bb5e42234852ced49447cd72fc6 *man/bicorAndPvalue.Rd
d3e975d3323a46bfaba290ebf3958e52 *man/bicovWeights.Rd
6be1882171439c629ee9d1265458a422 *man/binarizeCategoricalColumns.Rd
7e1f6831ec4f0bfeceb47e61d6bb6692 *man/binarizeCategoricalVariable.Rd
65ac3edef958fd60295b57734824b37f *man/blockSize.Rd
acd19796b11e28d24c53269d55385671 *man/blockwiseConsensusModules.Rd
f32b1ef35c6cf6abae8f05f17c8e94a4 *man/blockwiseIndividualTOMs.Rd
4a94b12e0445eecd4fd79d28a291bb37 *man/blockwiseModules.Rd
14bb292cc65cc5a633416667c939a390 *man/blueWhiteRed.Rd
c5db45284538a7acbd1ac63d47eb4f8c *man/branchEigengeneDissim.Rd
bffaf7af5a6432a63c4d5513d71aef5d *man/branchSplit.Rd
816a353ce3eab35ade1dab4755fb16d6 *man/branchSplit.dissim.Rd
55eb98bbe4b7b70ca4d19863543f388a *man/branchSplitFromStabilityLabels.Rd
a670b576a031c5f51483aedd991e2cb3 *man/checkAdjMat.Rd
77c7d5fb58a8ec83f99ffbd83d4481dd *man/checkSets.Rd
277982294fa31dbbdf5945da95b5da25 *man/chooseOneHubInEachModule.Rd
2a26b1007bb5bfe78c8f9a1462d97011 *man/chooseTopHubInEachModule.Rd
5e958f0875508a71d357444f14b6179e *man/clusterCoef.Rd
a4dee3d59f71f9271fef45dbc884e50c *man/coClustering.Rd
39432228084e0ab40e2bdfba1971ef2d *man/coClustering.permutationTest.Rd
8f27170733d4c3702ef327e8093b0a4b *man/colQuantileC.Rd
4c084cc6c7c2586c1668bd5efe05ccf2 *man/collapseRows.Rd
36c92b8ae3dddd0ce0cf42916b20b47c *man/collapseRowsUsingKME.Rd
e3f8541b1a35d25d0767fca0ecd2a2b3 *man/collectGarbage.Rd
161399055c32a9010d1311b4987249b8 *man/conformityBasedNetworkConcepts.Rd
f02e1252a1f127594ba501f14727ad6d *man/conformityDecomposition.Rd
e85121993ab49874d23abcc709140235 *man/consensusCalculation.Rd
8cdeebac2a94ffacb18c92fb6e527950 *man/consensusDissTOMandTree.Rd
bdb934e0d83055b9761c0241ca0180cd *man/consensusKME.Rd
4ceee9e0b3e10f94f427290042ec11e5 *man/consensusMEDissimilarity.Rd
171634ec94492cd2a68a284c88329b68 *man/consensusOrderMEs.Rd
95b1b6e256a3f74f55c682502d317941 *man/consensusProjectiveKMeans.Rd
48c16095ea58df4111408b497f51fe30 *man/consensusRepresentatives.Rd
f45e188a899b1a2691b3cb78b016bb45 *man/consensusTOM.Rd
cfe0f218bfeb5025973dd853ae48782e *man/convertNumericColumnsToNumeric.Rd
ec6ea3da4f9701d08fb28775aeebae35 *man/cor.Rd
816782162c19cddf11f637162f4cb0dc *man/corAndPvalue.Rd
19cd6ac7f5c9891b6f6be8fd4034f484 *man/corPredictionSuccess.Rd
ddd90d6b54aac459bd8af75db5f5e8a6 *man/corPvalueFisher.Rd
087446ede74deb76c5952eab930bcc3d *man/corPvalueStudent.Rd
c52e6fc1e3b1b5bb616681de0984d7b5 *man/correlationPreservation.Rd
06d6988c8a2b30e720ed769496a5573a *man/coxRegressionResiduals.Rd
ebd1b5154444b4b1ddb110a91453596d *man/cutreeStatic.Rd
76d1215fee27707480cb5b2bb4436754 *man/cutreeStaticColor.Rd
aa9a53d1eeea331b86022a2f85238b9d *man/displayColors.Rd
ec2017b186d25a4707f66d4069f3f18c *man/dynamicMergeCut.Rd
eb024962b21b1535d8baa24fad961591 *man/empiricalBayesLM.Rd
46e29dcd87c583e3d449493600141016 *man/exportNetworkToCytoscape.Rd
932f2ec52d299afe70b469264398fa27 *man/exportNetworkToVisANT.Rd
65e62fed0cdf47bc3d30d014841cd5a9 *man/factorizeNonNumericColumns.Rd
4f2aee2616cd6c8a62a69753510b8911 *man/fixDataStructure.Rd
c5e50271ec9b716960866022c693589d *man/formatLabels.Rd
a0878ec86150188ec97abfc2a3533b2e *man/fundamentalNetworkConcepts.Rd
d5eccfa6aed03b219ad13c2e018c910e *man/goodGenes.Rd
7ada67f812f019f45d24d4a1137d5fa3 *man/goodGenesMS.Rd
67f904ccc5437f12602cd98dd0d1833a *man/goodSamples.Rd
6f8140f19f31df1dc87875b1c371a8d7 *man/goodSamplesGenes.Rd
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7e615387771ecd5750522c0067184f15 *man/goodSamplesMS.Rd
c32af802f17f6a13a8d1f9022269b151 *man/greenBlackRed.Rd
557c9bef232a943268f060c32c6eb87f *man/greenWhiteRed.Rd
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ac0fab9a2258e95f6401d26e15fd6dc3 *man/hierarchicalConsensusKME.Rd
d45876fcffb99e345b1353b829cb157f *man/hierarchicalConsensusMEDissimilarity.Rd
c0941ae1ab557f16ad44fa38bb7267f3 *man/hierarchicalConsensusModules.Rd
fad4add1d101a4e6a560fcd331aaadfc *man/hierarchicalConsensusTOM.Rd
fb7a0a67cac69b516b5a5ed51ed343b9 *man/hierarchicalMergeCloseModules.Rd
1282dbf2291264f8c714ba10c3c93b33 *man/hubGeneSignificance.Rd
f1054aaa6b9e7e9ba8c4d5d12d01291a *man/imputeByModule.Rd
b0ac6fa7c410f9dfaff88a72d225a4d8 *man/individualTOMs.Rd
b2ddece70167d37c6ca795c56c6bbf51 *man/initProgInd.Rd
4fec782aa9797a7638471e0da6491fc2 *man/intramodularConnectivity.Rd
500667bd49d01613aaaf03cd9831b042 *man/isMultiData.Rd
e4481641ca0ff1c2a648e3427f60ca2e *man/kMEcomparisonScatterplot.Rd
367c8efa7aff57c91f508f4d6993ee0c *man/keepCommonProbes.Rd
8e09108aa6a9aa781d9be2d546e838bd *man/labelPoints.Rd
4ed4ad8fb3eefb8fb3ebc018d50f24c1 *man/labeledBarplot.Rd
45f825a086e0f34896768a529ef50b4b *man/labeledHeatmap.Rd
c23d113bc424610eaa055485c9fc2fbd *man/labeledHeatmap.multiPage.Rd
4bbe76c64e465dd5d480f649370d8c31 *man/labels2colors.Rd
7fc163ef52818f5539648901398c4449 *man/list2multiData.Rd
5ed84fabbd891e85b12619f3530492c8 *man/lowerTri2matrix.Rd
14556752ea276b68851b24234c39bda4 *man/matchLabels.Rd
caad2f4cd29ed55a6c2ff090d7090ecb *man/matrixToNetwork.Rd
db4368efdc27de132013ce1c5ee8a952 *man/mergeCloseModules.Rd
50529471afd7336184fa7963507eaa5f *man/metaAnalysis.Rd
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9282f0ac4a84e49c5e30f2cea1648eec *man/minWhichMin.Rd
7edcdce8f159ca0dfa75c6381c252900 *man/moduleColor.getMEprefix.Rd
5fe15072f66d4ca7175539b748f46396 *man/moduleEigengenes.Rd
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271eded401e01f0e1e330f34d33afe22 *man/moduleNumber.Rd
2959dd49093ba6bbf2de6a0118bc9291 *man/modulePreservation.Rd
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ae9dfd2181ad34cedaf894a1778b30ff *man/mtd.mapply.Rd
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6e335fdb204eab8ea890c2fa4406b4a7 *man/mtd.subset.Rd
2728b2005265bff56411d862d9960e81 *man/multiData.Rd
76676f3fdba6e9ca1d4ddccc3cc70fe9 *man/multiData.eigengeneSignificance.Rd
86a0d2d275b7629c1051e51c47c318c2 *man/multiGSub.Rd
620889218d4d5ed5e3aa6bb214005152 *man/multiSetMEs.Rd
9006d4cf6446d835d0c8c3bd9d3c72e7 *man/multiUnion.Rd
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5a9944c4bcd3dd9111df6d32dca279c1 *man/nSets.Rd
f254d52b87268800ff55ac2372a1a308 *man/nearestCentroidPredictor.Rd
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9de47712cf569e3de94cfff5f17a72ea *man/nearestNeighborConnectivityMS.Rd
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9b0d99621400d82fee9c9a34dde5c5eb *man/networkScreening.Rd
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1a885dd7884e647bbe27bef91832ad10 *man/newBlockwiseData.Rd
980dbf21bbb9f54c5ddf222f64eb81bd *man/newConsensusOptions.Rd
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6dec40376ce19b7cc0d0d8d2ac3d25a6 *man/orderMEs.Rd
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9ba4ff24a88a7d6bc72960f6d5bead4b *man/overlapTable.Rd
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638576053aa6de4e1d9bd76f17cd417c *man/preservationNetworkConnectivity.Rd
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9a5477827bbbd20d9cfbddc7f153bb94 *man/proportionsInAdmixture.Rd
ae7dad9cfe8d1629e82f9b0c1edcf723 *man/pruneAndMergeConsensusModules.Rd
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948c0413d52381f83d79c8846b946966 *man/qvalue.Rd
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7b24ba1f32d3d50e7c77ae2f592381d3 *man/recutConsensusTrees.Rd
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0a9c3ee7c033293b7796df9b7c1af2d0 *man/relativeCorPredictionSuccess.Rd
09f53652e9013b5e922ae51635c0bf45 *man/removeGreyME.Rd
89bfa864baec9426f6b31c481245e27a *man/removePrincipalComponents.Rd
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8df291bea2fe4882cbef48c08cbaaa6a *man/rgcolors.func.Rd
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6a79360f6ec29c84aeb933bc46b4ff91 *man/scaleFreeFitIndex.Rd
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