#Removed according to recommendations
##PKG_LIBS = -lstdc++

PKG_CFLAGS = -lz
PKG_CPPFLAGS = 

#
#

#WHOPSRCS= w_snpmat_fnc.cpp w_filtering.cpp w_read.cpp w_rsupport.cpp w_tools.cpp w_dataframe.cpp w_codemat.cpp w_main.cpp w_region.cpp w_samples.cpp w_snpmat_diplo.cpp w_snpmat_basic.cpp
WHOPSRCS= w_snpmat_diplo.cpp w_snpmat_int.cpp w_snpmat_str.cpp w_snpmat_fnc.cpp w_filtering.cpp w_read.cpp w_rsupport.cpp w_tools.cpp w_dataframe.cpp w_codemat.cpp w_main.cpp w_region.cpp w_samples.cpp
TBISRCS = t_region.cpp t_info.cpp t_read.cpp t_Rifc.cpp
FAISRCS = faidx_ifc.cpp  
RDNAPPSRCS = readdnapp.cpp
FIRSTSRCS =  w_vcf.cpp t_main.cpp

CPPSOURCES = $(FIRSTSRCS) $(FAISRCS) $(WHOPSRCS) $(TBISRCS) $(RDNAPPSRCS)

#
#

TABIXSRCS = tabix/bedidx.c tabix/bgzf.c tabix/index.c tabix/knetfile.c tabix/kstring.c  
FAIDXSRCS = tabix/razf.c tabix/faidx.c
ZLIBSRCS =
# zlib/adler32.c zlib/compress.c zlib/crc32.c zlib/deflate.c zlib/gzclose.c zlib/gzlib.c zlib/gzread.c zlib/gzwrite.c zlib/infback.c zlib/inffast.c zlib/inflate.c zlib/inftrees.c zlib/trees.c zlib/uncompr.c zlib/zutil.c

CSOURCES =  $(TABIXSRCS) $(FAIDXSRCS) $(ZLIBSRCS)

#
#

OBJECTS = $(CPPSOURCES:.cpp=.o) $(CSOURCES:.c=.o)
