
PKG_LIBS = -lz

WHOPSRCS= w_snpmat_diplo.cpp w_snpmat_int.cpp w_snpmat_str.cpp w_snpmat_fnc.cpp w_filtering.cpp w_read.cpp w_rsupport.cpp w_tools.cpp w_dataframe.cpp w_codemat.cpp w_main.cpp w_region.cpp w_samples.cpp
TBISRCS = t_region.cpp t_info.cpp t_read.cpp t_Rifc.cpp
FAISRCS = faidx_ifc.cpp  
RDNAPPSRCS = readdnapp.cpp
FIRSTSRCS =  w_vcf.cpp t_main.cpp

CPPSOURCES = $(FIRSTSRCS) $(FAISRCS) $(WHOPSRCS) $(TBISRCS) $(RDNAPPSRCS)

#
#

TABIXSRCS = tabix/bedidx.c tabix/bgzf.c tabix/index.c tabix/knetfile.c tabix/kstring.c  
FAIDXSRCS = tabix/razf.c tabix/faidx.c

CSOURCES =  $(TABIXSRCS) $(FAIDXSRCS)

OBJECTS = $(CPPSOURCES:.cpp=.o) $(CSOURCES:.c=.o)
