export("aline","raw.alignment","encode.ALINE","decode.ALINE","map","features.plot","ALINE.segments","show.map")
#export("aligned_string","random_parameter","crossover","ES.update","fitness_count")
#export("ALINE.map")
#export("Al.alineR","data.alineR","raw.data.alineR","candidate.alignment.alineR","ranking.alineR")
export("generate.training","optimize.features","ALINE.map")
useDynLib("alineR")
import("doMC","foreach")
importFrom(graphics,par,hist,abline,legend)
importFrom(utils,write.csv)
importFrom(stats,median)
