1c08104c32ba11fc4da4da9df73d8f55 *DESCRIPTION
068f656b098eb007fd78d661305ef372 *NAMESPACE
150254df26c48e15dead1d2f56b585aa *NEWS
4cb5dfe4fa115e3d65a9e6b7a6e3c22a *R/RcppExports.R
5e199f7bdb3b2dac728d499af72a66cd *R/aa123.R
3a1c88e13bfe0be7c84120618822e090 *R/aa2index.R
5e13a692c22b3737ee31536557624864 *R/aa2mass.R
4885bccc6c6f90ae732f4228e4d2982d *R/aa321.R
136ef786c6ea8b94ac8e6c38316a32cd *R/aanma.R
eb0216ac090fbde85b75e31d51a9d938 *R/aanma.pdb.R
0f46bd8a9ad7de4120d4575742cb0570 *R/aanma.pdbs.R
8a2d7097e2f56c21e41f4532d20b41b9 *R/aln2html.R
df1256cc99bbbd413860c6bc997851af *R/amsm.xyz.R
ef880390ae3f58420b0ab4121506c05b *R/angle.xyz.R
3870b339a62143463ffe0e037b41134f *R/as.fasta.R
99ce62a5cad5b025855f2f8e174f398d *R/as.pdb.R
29d38e33c2e2798192b9860ce3ff9c39 *R/as.pdb.mol2.R
735f3ec1cd23c14ff58380b5b2c1a549 *R/as.pdb.prmtop.R
209e33ae16d4d9b25880946ada95f3c2 *R/as.select.R
a178e265e7a83136b94398d6d2e85411 *R/as.xyz.R
1ad61b9c92f5e0abc66f15a97831b1ef *R/atom.select.R
05c3ac3502d26d964bad1216c25fb724 *R/atom.select.mol2.R
9ff27773f38387019cea6fd52c0bec6b *R/atom.select.pdb.R
472881c06fa417e3342cd7d3f6dbb00a *R/atom.select.prmtop.R
35ef25bf95af456136017aaa2d6361f1 *R/atom2ele.R
17a8373e8df1a455dc17192f295bfb21 *R/atom2mass.R
48a555c4bee0d0dd3c02418713af7a87 *R/atom2xyz.R
0c8a1dadda8ce2e8a2a9ca2de0125dd7 *R/basename.pdb.R
46dc0dd398308a651bdb007b88416647 *R/bhattacharyya.R
c5af3447d6746e0544490d7fdb9040b8 *R/binding.site.R
d216833257b72d8919350d6e84f1842b *R/biounit.R
7976b2ab83956c2acc1897f676385a18 *R/blast.pdb.R
e30e78857cdcc09122a065928319fd1f *R/bounds.R
e1889cc2c0e3a6f4d6edb848d252d8fa *R/bounds.sse.R
abae5f5457ba8820a71069b82b8e5600 *R/build.hessian.R
d466ea5cf94d1383b2df41cb5e695735 *R/bwr.colors.R
3e5027282efcdbcb0cee6308108d285f *R/cat.pdb.R
f76fdfebb462a16c54606a7907fceed1 *R/chain.pdb.R
158d1cde1eda06147b7bfb36bf08e583 *R/check.utility.R
1ac033e8000d25ab0f9284971ec5457f *R/clean.pdb.R
600d028df567b876ee7bf94eb905148b *R/cmap.R
ecaa84fd34f5e9c4953e20e2b6cdb1fa *R/cmap.pdb.R
59bd3ce7f893392b424cb7625b6a5b38 *R/cna.R
7c5098bfa91b96cfb2847c7794883862 *R/cna.dccm.R
9e9013afedba0d15614f9e2d24460cfb *R/cna.ensmb.R
d09bd7f4548b9323d92a1393106e02f6 *R/cnapath.R
6624ac64efb374dd2e0896326ea811f9 *R/com.R
e00189a7a762151be9f33223a236a63c *R/com.pdb.R
c2fdd1f28bdef7d151e51b340a84f278 *R/com.xyz.R
786907c3ba7816f42bb9bfbc44222405 *R/combine.select.R
9dd223e4ad43c7cbae3dc65c5ffab9d3 *R/community.aln.R
464f4b247ec3a11136a67e51a30931e4 *R/community.tree.R
6b063f818fa98667191a4069019c216d *R/consensus.R
0530ddc97b7d04bcb2612fc117af0210 *R/conserv.R
c64ddbcdf11184b7f20bb08c95722bcc *R/convert.pdb.R
e803c2ef65a33e489722b3d66b800def *R/core.find.R
5a2e60494f76459eeb447bbd65f584a9 *R/cov.nma.R
ad489e1ed9174a006c7ab5cd2ce8413e *R/cov2dccm.R
63cac65301a42de99972432b1c7c081b *R/covsoverlap.R
fef75828e128d284e8ca624977e44960 *R/dccm.R
d09f37402425958e25d133c2dd229f99 *R/dccm.enma.R
f41d92e86f92802cda8592a70e296701 *R/dccm.gnm.R
b9d923036a07d31ba20dd829773c1ba9 *R/dccm.nma.R
da73248e82bfad5f8861757a1604c017 *R/dccm.pca.R
7510e6753cca81fcacecc6849d405e72 *R/dccm.xyz.R
96286e9d868f5c4f6e059689acff33cd *R/deformation.nma.R
1beb2e06307b69059f64d6524ae68bcd *R/diag.ind.R
d9885c3180310f8b8778ee222d632567 *R/difference.vector.R
b4724d94d0fdfd4c75681308a67dffe5 *R/dist.xyz.R
97f5219e66bda3348e3fd2013d9c3518 *R/dm.R
3bce7847ebef075579b4742ab25d0e5f *R/dm.xyz.R
9bcc4353cde242101d7ce9c54fe33aa9 *R/dssp.R
6bc81a543a1eededcb1d1721dc0c1f75 *R/dssp.pdb.R
1e468e2685c24dcdc0a2974760c1a081 *R/dssp.pdbs.R
9f9aa73363a01367436a9941c20e412c *R/dssp.xyz.R
8e116ead75a3792026291a58fc50227e *R/entropy.R
83a16eebc26c7c1fdf0b7979cbc4a79e *R/filter.cmap.R
b8ddf74c01774f56918b0641fc972b5a *R/filter.dccm.R
5eee2af1c1b9b9e818e854afaf60f16a *R/filter.identity.R
5819acbe37a406c25ed69b5068b428f3 *R/filter.rmsd.R
ee379599d8254472d6df82f8ff595439 *R/fit.xyz.R
7f0c0d6133252ca6896fd8f6d9cbc369 *R/fluct.nma.R
1969f6a1b39e4ebd9328ff9d4fd14db5 *R/formula2mass.R
228a1e2d7bae2b06cb955dc2849228e8 *R/gap.inspect.R
7e1043b7e2ece35717f40879ceeeef54 *R/geostas.R
f5135bc65e364ac8cea39ddd30634877 *R/get.blast.R
fb83cdc895cff79e35fc5ed430ff1a8f *R/get.pdb.R
97eb28e060ded4ad043a28704dd0633b *R/get.seq.R
47addc7fcd0744086985af22e2b862cd *R/gnm.R
1ab7a0ea647f9cbd5794af9d3636cd0f *R/gnm.pdbs.R
a4650a718115f929a223abf936958772 *R/hclustplot.R
c6e9b743a78a1a49988dd076ecc00fd9 *R/hmmer.R
a1c7b2c881e3b27c86678708818782d4 *R/identify.cna.R
9face02e76a999d40e7d3c8f47d45565 *R/inner.prod.R
b8eaf3135026219319f713351f3913d6 *R/inspect.connectivity.R
46f2bc0f094fb17266a35df0f7fd7fdd *R/is.gap.R
46766d6ca465170d8cd8bc96513eee7a *R/is.mol2.R
b133ffa086b43005b943f9a2f0450579 *R/is.pdb.R
c5e4dd60572e029d5a99aff57a12814a *R/is.select.R
ff4bae24762c94c65b4c10d9774a76ee *R/is.xyz.R
f3a1ce298492f7992b91429f9a65154b *R/layout.cna.R
74e549c90c82575fbe6244218df80790 *R/lbio3d.R
4a283994a89e2b5e73a4cd08901ed216 *R/lmi.R
bae50f7d97afab0b8b4e631c6fa36218 *R/load.enmff.R
d6fd5c79cc8300c03b80f69ac8404bca *R/mask.dccm.R
8919406e86f3472e4feed5dcb3037231 *R/mktrj.R
e9b4ff76f940f71b02cce48c3d53bda5 *R/mktrj.enma.R
7ba177c301ac5950f189337668d0b14c *R/mktrj.nma.R
b9666ca7dbb29a832950c980270417bd *R/mktrj.pca.R
d7ed0d61455e1b71a749685e0b7a7894 *R/mono.colors.R
f4fc89df3e865cf4220e6717fe500bdf *R/motif.find.R
489983bdb7185d46ab76029409646ca2 *R/mustang.R
2f206dffba25aa0cf8a4c57672b4ded4 *R/network.amendment.R
8d1844c9a1b04949d3e74ca4e559ef89 *R/nma.R
ae4ce06bc71f20c2384460a6b47bec6e *R/nma.pdb.R
bc44da999c7df377244136dacf677b9b *R/nma.pdbs.R
274c79ff0feeb26e8dda4bb052154378 *R/nma_funs.R
70d776448b5ed1c49b1d15b12d5e5db0 *R/normalize.vector.R
1f8acdc2387bae8073ffd6dd4f817dbb *R/orient.pdb.R
78f5481dba72e37e66a350e3ee6b564b *R/overlap.R
bfb07d8049ba981029b5cef22eb8b367 *R/pairwise.R
6e76c8e31335687df8b369a1bdb3f57d *R/pca.R
5adfe681731442e5f470fbc59ffb6486 *R/pca.array.R
964e746cc789e91cccfdf3c2f79cfd5a *R/pca.pdbs.R
84c8023e33a4752ca0044234df7ef9f8 *R/pca.tor.R
0fafa8786086504978300303eab268c8 *R/pca.xyz.R
629e497c2ee2a29509b0a6abddd4a31c *R/pdb.annotate.R
92030f163f3d67913fb7a1b9b57be15a *R/pdb.pfam.R
026945ae25900ec0a924501a99fafacc *R/pdb2aln.R
c653c556af553f30ddaeaf2466a69a49 *R/pdb2aln.ind.R
159761971c152bf2db899a25a7754ceb *R/pdb2sse.R
73b60736a0202c98388c651784e1de25 *R/pdbaln.R
13dc32cf8bba028bd221a1f250f419a7 *R/pdbfit.R
83d54906090e2647ed608e7c40016275 *R/pdbs2pdb.R
b2eaa46739cd4fd096a5a9a3a4b36c56 *R/pdbs2sse.R
3a9e52c15521ad9349e878e392d9aa1c *R/pdbseq.R
c21018b2947b440db299dab4b3cb8cb1 *R/pdbsplit.R
7758d93051e9c763dc940893213f357f *R/pfam.R
c8a8078b304b5af5caedc480513d683d *R/plot.blast.R
86be6e01618d198115bcd4b59e8da3ae *R/plot.cmap.R
8e807e4562b5728018421aa1bbc5a6c5 *R/plot.cna.R
5f37909e7127bfda49e14dbc8e9ce4f7 *R/plot.core.R
5f709eb4d16951b94a3ef1b860522ec2 *R/plot.dccm.R
9979be9ad91ac27290c418f60879a1d7 *R/plot.dmat.R
8fe618fdd7b9d92e61002bdc0f35f774 *R/plot.enma.R
6fefa0e9f50ecc5b96f07ee771004193 *R/plot.fasta.R
dccf527bd23922cbef6ff1209b9496b0 *R/plot.fluct.R
76eb4ca559a6d9c93d795cfb3b9f0262 *R/plot.geostas.R
dae1f890d18936dffe91bdf08830e114 *R/plot.hmmer.R
81537d4c1083fbcc39f4698c5ceee2b7 *R/plot.matrix.loadings.R
119543f73aa719e47a54ee1b1418fc94 *R/plot.nma.R
0d553d0c777fba08972d519c854d12d0 *R/plot.pca.R
ceca3cfe8aadbc4ac81d8cb23ef8f665 *R/plot.pca.loadings.R
a0110652e10e3b8634be2998e54c7a7d *R/plot.pca.score.R
0d12278d413198ae0111ea4d7551ac29 *R/plot.pca.scree.R
b44899b6b43adf43fd010a9faf160ddc *R/plot.rmsip.R
8e198ecfacb7f24eca13082d1ca19dcb *R/plotb3.R
6d64ba753c41667a9f45f73810b978d9 *R/print.cna.R
efea2031c5476d8714166c6ac612cdca *R/print.core.R
d36bd215d9fc19dee5911ff92cd429ee *R/print.enma.R
963c784e8e86027a377b13bc333b01ff *R/print.fasta.R
1f34d5688cd4496a9b22cb58dd33066a *R/print.geostas.R
1547e70322d8525acaddbc42d0269c6a *R/print.nma.R
82dceefd5f52949a08489965d718db12 *R/print.pca.R
6ca64945413d2668612d10860d5d2be3 *R/print.pdb.R
cde3ee5c511a32f80759a997d811a93b *R/print.prmtop.R
1a5f62d5aa393ebddcb43f70c5b36941 *R/print.select.R
586a84798de867b332fe10af487a4546 *R/print.sse.R
5cab345f774a13ba6147967a5d902a27 *R/print.xyz.R
48a31b7ffd4c43170f3ae1e87537c329 *R/project.pca.R
b0dc473b549c4d62c4c21a4261266536 *R/prune.cna.R
c3e0309c5679e3bfdd83644968393fdc *R/pymol.dccm.R
b12b22bdec4c126357e534ff1073f124 *R/pymol.modes.R
87e828e384ca81311ee8a3c9438f2d8a *R/pymol.pdbs.R
3984d7d3b5806f8cfc9fa847f78e7a97 *R/read.all.R
9f6bdd1a8a590160d3332b26b28c85cf *R/read.cif.R
23e0e05cbb55e57f91cf69b331f9b39a *R/read.crd.R
e992c6a2601ea9188eb30f15d2023d4e *R/read.crd.amber.R
5e91c75f612d033c3edf6eaf88312661 *R/read.crd.charmm.R
0ab8ab92a6c1683d0e6572ba22a2ff95 *R/read.dcd.R
fc5751a6dc90b7345c5cff9b2f2dbb2c *R/read.fasta.R
b5e41ccb83eae90706940efee43ec066 *R/read.fasta.pdb.R
bc664fc717b560c83a3eee4d6972e4f7 *R/read.mol2.R
939dc1d01b3f020852b236112224a849 *R/read.ncdf.R
2235456b5d2949e93a9add1011275d2a *R/read.pdb.R
5c81d409990b6eba721cc160a833446e *R/read.pdb2.R
69b73edb0238dabf39cd14f0afe45190 *R/read.pdcBD.R
c88e499f2e478f7e15453c19374e344e *R/read.pqr.R
ed58c2fade5372f69a398f211c8f81e3 *R/read.prmtop.R
9d6d66eb18a8533831a0bfedcd2453cf *R/rgyr.R
8dce578e11588b72651d4fa775a3e318 *R/rle2.R
4f5dfae4f0f39557f8245a183db44e6b *R/rmsd.R
46fa1ef681dc41ce4054a0fb8b9e339c *R/rmsf.R
1f9d56bce23f0ba1a46c27adef9f5e38 *R/rmsip.R
9213954e43f1c8b542bb051cac91769d *R/rot.lsq.R
a13124e47805a9d128401bd6c7e28d1f *R/rtb.R
7810801163901688ee3cab960c83f316 *R/seq2aln.R
74e7a13010e69d6bcf072b58ffb3851e *R/seqaln.R
5bd5ce11e71b9a75a87e3dc71deadd17 *R/seqaln.pair.R
6b313bded9b39072693f189cee48c6fa *R/seqbind.R
d15303ebd81be44059c949932085e57f *R/seqidentity.R
531830c2dd096bcf7078661cf9d75e90 *R/setup.ncore.R
b265ab922ed09417822b6bce32d57452 *R/sip.R
573372f565bb10e9a426d37d68b9eee3 *R/sse.bridges.R
d3c99ef1cb519fced45d3482b0a1c177 *R/store.atom.R
4ad767749c167d3f8dd2dc6c30325e23 *R/stride.R
b99422fe7b442863aca6042552724b74 *R/struct.aln.R
02b9229d7c25dfe12356d97abc055c25 *R/summary.cna.R
3329274798590bed3fd42ff96aa0e4f8 *R/summary.cnapath.R
c75b67a9b7274163e06567328630a4a2 *R/summary.pdb.R
86cdeff6f9f61676904fd91d4b93ab4c *R/torsion.pdb.R
02ecdf3e7234170d2cc17cefef944ac4 *R/torsion.xyz.R
d657629f5eb86376fa71a061b78f5305 *R/trim.mol2.R
61afb6d0d8211337b78b748e90fe8685 *R/trim.pdb.R
7b98249fa3e185d3ced241d3168a7f29 *R/trim.pdbs.R
7f585f9541a0e392a23eb381d6653e36 *R/trim.xyz.R
8d3ccf7b583e943a9e46c3c4af39267f *R/unbound.R
05ee998067a81e37b1bb90dd57a2cec2 *R/uniprot.R
d5d3df69651197f3f0547daf0e613d1a *R/var.xyz.R
6edf654c5a36ccb0db5f5226b2d40616 *R/vec2resno.R
b323eb922cf8f9036d515e605b7cda1e *R/vmd.R
5da9243c86cd4b5587a5536ce48136d0 *R/vmd.cna.R
f8da164cd6f7700ab0d98edb18a2d51b *R/vmd.cnapath.R
f8814744b4feae467bc874c5f617fe25 *R/vmd_colors.R
91577affd2d5930b392467972a3598ab *R/wrap.tor.R
09cb8f145e08d41466a11b90c9fd6b8a *R/write.crd.R
f7ec0b5657fb192ad6876aaa02999ff3 *R/write.fasta.R
1e1b0227e7768f3147548f04d61d7032 *R/write.mol2.R
b1e0b5a0e37995a494cf65c7b7cb78b7 *R/write.ncdf.R
c2c64ecf444a1e59413d3d250e48c4c9 *R/write.pdb.R
548106c98ad8bf2b3b63686d9b7947ad *R/write.pir.R
a97c9312ea73b4e105a583707d4a5578 *R/write.pqr.R
9e57938c5fa7ce30265b29e8750f4810 *R/xyz2atom.R
0570c07b3d70b481b86a372c6ce51c3e *README.md
257e290940c1800a9e65c36375ea11d4 *build/vignette.rds
b4187321783b82378e3f9be255107088 *data/aa.index.rda
01158334e1c54f122a6af1da25b2b636 *data/aa.table.rda
7d55fffdd06d238f83012dffdab1d452 *data/atom.index.rda
fa83e2ac0f558f03e525c98b46597781 *data/elements.rda
a895de8af57cb0ccc8c4dc32a1911f6a *data/hivp.RData
bc06c7fcb03535dbc7f0d1e1b3a1f345 *data/kinesin.RData
1a009064df11a8cb036d86a398669efa *data/sdENM.RData
ff5d52ecf3f780cbc5c693e87895aacb *data/transducin.RData
9c7346600e9e15eabbf6db7f04b6fb53 *demo/00Index
78e18dac008a0095a72e33647296befc *demo/md.R
5115f75c59507335aca02b35327f2324 *demo/nma.R
37555f4c7b54f97ed5466b49a958a176 *demo/pca.R
b7e58ea62baf621f669d3afd84de90f2 *demo/pdb.R
b50546f526b9da77fa3d599ccc8f5fdf *inst/CITATION
e241b7f611abf8631129416b2b2a6fca *inst/doc/bio3d_vignettes.Rmd
df559495f52dda889594f09f4b26ec12 *inst/doc/bio3d_vignettes.html
ea4074c1ad01d8237901b03688f91fec *inst/examples/1dpx.pdb
83ea2593e2c4021492c564f437f0072f *inst/examples/1hel.pdb
7275ccf3f0ab303ae18f01617f420056 *inst/examples/aspirin.mol2
a919bcdc124d3860979252b045358337 *inst/examples/crambin.inpcrd
fe8c318484c84e12a0e921c62c08c29d *inst/examples/crambin.prmtop
13633a8eddafb92595c4c0fcbcf22aff *inst/examples/hivp.dcd
c9ae51f55e66796d9095b12c2cedc2ea *inst/examples/hivp.pdb
b97811463e69c24e6ed8ca61cae7fe3d *inst/examples/hivp_xray.fa
35d529053130d3a6a9d02956cd68abfd *inst/examples/kif1a.fa
962f834069acd3b4fad3fbafe30cab65 *inst/examples/test.pdb
cdffbec11fea0886a52591d8650fefc1 *inst/examples/transducin.fa
89fb7d71149c8b40c36ae78f0f676535 *inst/matrices/bio3d.mat
738fed81a10b6bfcc3fe72d96e49643b *inst/matrices/blosum62.mat
da8648797ac7625cb14af0741eb80340 *inst/matrices/custom.mat
8ce757a60ee4b6fb9c1dd4ad611352d6 *inst/matrices/emboss_properties.mat
10899946c2edb54f64d77fda863120e7 *inst/matrices/pam30.mat
80d78a8630e33427108c62548dc8ea85 *inst/matrices/properties.mat
4eca44c2cbbe16f4c1920e5c5b5fec6b *inst/matrices/similarity.mat
e6378d2ac1dbdb756de09e8732143eb4 *inst/staticdocs/index.r
514d5755f114140eb3824c3a9b11e778 *man/aa.index.Rd
b58366535e4316def8b4618edc13a951 *man/aa.table.Rd
cb66a48dbee4c2e288627b9ea3d951db *man/aa123.Rd
7ed623b6b3d1a53200e638ace21bb476 *man/aa2index.Rd
1a9206737603466d327ee69ec3a66c24 *man/aa2mass.Rd
6eb71c3d14e610c32922f09a9b8a0846 *man/aanma.pdb.Rd
2022fea6a3f4a30c7f07b64296434d6b *man/aanma.pdbs.Rd
a5514ac0ca96d02ff905c0da79bf6e8f *man/aln2html.Rd
d4f87a2c9c4344b5e83f155f4c8e11e6 *man/angle.xyz.Rd
b938b57f3b0f1e5bc88dc3064a0617dd *man/as.fasta.Rd
d6679f1b0071a4f44ed95ad3ab34d771 *man/as.pdb.Rd
9be4f170fa002fb27e8e94ebbb440e95 *man/as.select.Rd
83141303adc7a82321f5513341f8731b *man/atom.index.Rd
81588a5093af0625b320a8600654d096 *man/atom.select.Rd
23fe0870a6905ae93b736a629a0453f9 *man/atom2ele.Rd
c50d66e01ab90e135a211081f819a63c *man/atom2mass.Rd
7e752beacb85941f5ef50ee69a8dc7da *man/atom2xyz.Rd
71788475bc11e8b02f7ee4390ba439e7 *man/basename.pdb.Rd
29c5ac74c5b69f1fabfa396f54592f46 *man/bhattacharyya.Rd
2b016053e31cdc45a613b567ba314ea9 *man/binding.site.Rd
5555b360f7bad4e016c08e13ffa691c2 *man/bio3d.package.Rd
dbd7e0074496cc7b17b14d530c12ffdf *man/biounit.Rd
b66ee654b1cfeff0e61dbb99a941816f *man/blast.pdb.Rd
9ca205b70db6da407022e6e8e3df592b *man/bounds.Rd
dc9e849aaf90dfb616f49cbb15d69ef5 *man/bounds.sse.Rd
e583167d79325233586ddb72489aee62 *man/bwr.colors.Rd
ebaf46fa27bfd05dc5942e64d43ce547 *man/cat.pdb.Rd
afe7d0d6de120d2726d007f0de001e35 *man/chain.pdb.Rd
2fa034ee371c6082702a19c92b70eb79 *man/check.utility.Rd
bae1ae7de8d02f12ef172259d1ad5159 *man/clean.pdb.Rd
50145f84891c5406caad22c710ddb110 *man/cmap.Rd
42b07b4b18a323232e523c64719ccb8f *man/cna.Rd
3e497ddd0033da41b633654227c2c400 *man/cnapath.Rd
529d9997941a9a428056c8b0f7c7fc88 *man/com.Rd
1cea06bfbdd42f7234addcff9a7b820d *man/combine.select.Rd
b2a66f4e076d9b75aad962c9ef3fa63d *man/community.aln.Rd
23d2b887c294f24d2d44f4ff4f2a48c7 *man/community.tree.Rd
a452eb11788c87bb9691a661d345d056 *man/consensus.Rd
d75b4dd2fd167c244c62d2f2dcd51967 *man/conserv.Rd
2b82724e66f9241d2447506aa0aeba67 *man/convert.pdb.Rd
a2a2c6397c5c50058762d680368f2124 *man/core.find.Rd
599c676a63178db798ce860fe23d5fa9 *man/cov.nma.Rd
8f42632b8d3049280b4c636c7cc5eead *man/covsoverlap.Rd
c7152000fe9db3ad35b66ca4583ee5d7 *man/dccm.Rd
e8444b390af39397ff632e19815e7503 *man/dccm.enma.Rd
beaaaf8bd7f739d02093f84ae33341d8 *man/dccm.gnm.Rd
3ac277628dcd76d60eb3cf0da5c584bd *man/dccm.nma.Rd
3afea33949c0c7537694a84c515db367 *man/dccm.pca.Rd
94e6f668260eb5100d912282749a0fc8 *man/dccm.xyz.Rd
7c1fdc4408d2875de7a7597816d232f4 *man/deformation.nma.Rd
c923b626ecfa0810c4ed642ec372cb8a *man/diag.ind.Rd
913b46273cfb376ea575391d0ee17feb *man/difference.vector.Rd
679eeb81251cf1c0d339bf1daba92a6d *man/dist.xyz.Rd
339ea7fd4793fc078ec0a2657bc60dde *man/dm.Rd
2473a1af39a31e56ce3c3c4bbc573009 *man/dssp.Rd
8756af3faa9d144be4f192fde9c1640a *man/elements.Rd
4d4179906785d741e4ff180391d3599a *man/entropy.Rd
19652be0b9a2f46c17f4c788e627681e *man/example.data.Rd
691f07b387b01e083dc507780677f744 *man/filter.cmap.Rd
a9de4994bd2a2397e16b4830c07c3f34 *man/filter.dccm.Rd
5fe3188b87cda4c0bf39c59680715635 *man/filter.identity.Rd
de1dd34d923f2bd6d46ea41397d6a4f3 *man/filter.rmsd.Rd
685d98be6c63b21352a39413021871f3 *man/fit.xyz.Rd
e7e8d1f2f4c6eb26e4656bdfcfeef3ed *man/fluct.nma.Rd
1ffc100dfdffa67dcccfd30544913950 *man/formula2mass.Rd
cbe6a6f50db0ecfb66fa2c48d9f3e470 *man/gap.inspect.Rd
29f8d0ff1655774ebe5ab380cca1c3cd *man/geostas.Rd
259a32d11fb99fb854695a40679b779f *man/get.pdb.Rd
c0b016d83d68c06b6b5cbbd70c4cce19 *man/get.seq.Rd
0b96e2e65c1d4d7d70d37835c687892b *man/gnm.Rd
1560274da20f8df6d1c90ada44a2f53d *man/hclustplot.Rd
4a8c497678fe1377758fb8b05fa4b756 *man/hmmer.Rd
c232e1bdebd66cae5f828d2323117a43 *man/identify.cna.Rd
d1db147f827dd27adec412411efb1b7b *man/inner.prod.Rd
a6e0dbb5bbbdd54641f51a13468365ac *man/inspect.connectivity.Rd
86678483ad473128779e86d25f800840 *man/is.gap.Rd
fce94b808315219a039e5fd5087aff28 *man/is.mol2.Rd
b70ea5b1c25fdc58287a5a2f92f507a1 *man/is.pdb.Rd
5b8b6e9f18c4acf77ea4e8fc1231a6c8 *man/is.select.Rd
f2cd959d3b0bd3cd16ddff0f00318276 *man/is.xyz.Rd
c0de93930aa66fa8e4f2dc5d267bd078 *man/layout.cna.Rd
060c0199ec1ba752ab79d7a43456209c *man/lbio3d.Rd
dfc9ecca8b182ebcb04eb06fa4457614 *man/lmi.Rd
7ba02458e721a3eb7791c88c4ad76138 *man/load.enmff.Rd
8cf75bfa87062538b1dd73a3d3032938 *man/mask.dccm.Rd
1638a12b0d2a05ef9fb6462ca359c9ec *man/mktrj.Rd
80013dfda9be3aff846a2ca0f83004df *man/motif.find.Rd
874c9fbf41886445c602ed54be101f98 *man/mustang.Rd
fdee512206556da58aecce50be359a27 *man/network.amendment.Rd
71ad2ee50aa734cec2af2cc417da5ed2 *man/nma.Rd
393d48481b2a670707acef6fb4c8c2f8 *man/nma.pdb.Rd
f85b2a512ca1799199147b58d226fd56 *man/nma.pdbs.Rd
6f18fd042d34d3ef235f7ebc5759a61e *man/normalize.vector.Rd
473ba3c98c1325eb6733d4dbaf5b6f9f *man/orient.pdb.Rd
ee0c1d7ffbf7de55827341ecb861e240 *man/overlap.Rd
e8833cb53be9a897b63dee8e0e7da248 *man/pairwise.Rd
6b30dceb8f37b251feb5ab5d3f56afee *man/pca.Rd
9f8102eee15f071fbad8055500fd8838 *man/pca.array.Rd
e436c1892ed7b3430ff6a6e9a9c98471 *man/pca.pdbs.Rd
818f18c8b96cc71126a52e969f53a6e9 *man/pca.tor.Rd
53cface21cbb40bd3ca870b4e2372836 *man/pca.xyz.Rd
fbe0ef283b507ff33a1149fd28f99068 *man/pdb.annotate.Rd
5be6f31a7292bee0be3cd10600844d73 *man/pdb2aln.Rd
3abac689ec64769ff39e4c9d7a8cf639 *man/pdb2aln.ind.Rd
9fa70c11e473f83db218cb2f4816e11c *man/pdb2sse.Rd
fe733c0e3c3d803b6d2c98008133b073 *man/pdbaln.Rd
811cc4d61c4ca9b60bc88d7304ec2106 *man/pdbfit.Rd
760a3287d4c95ca721b229d2d584774b *man/pdbs2pdb.Rd
9af1b77250c2376faf568991b2d2bb80 *man/pdbs2sse.Rd
be07bd16023323140f3c24b9cf048cb4 *man/pdbseq.Rd
34cb7ea578a05f3fd78bada423512521 *man/pdbsplit.Rd
6d07b414a2896edf8527005aea0cb728 *man/pfam.Rd
d4d0f0a5b0cd78d1068838bea9582675 *man/plot.bio3d.Rd
c2fc3a3fc68b25960fadfc01856d6891 *man/plot.cmap.Rd
b4205f8a9752ff4f15325126e00b3176 *man/plot.cna.Rd
b93f1f7706d412ea33d044ff0b331375 *man/plot.core.Rd
e983addd2c909060b66007af0df30909 *man/plot.dccm.Rd
b25abe5c5c275ff51d8b8249cfea136a *man/plot.dmat.Rd
89081aa2e053d47877dc8bcd962907f5 *man/plot.enma.Rd
a14759a107ac7956f786117a70be390f *man/plot.fasta.Rd
7138ba6823879c2483e3a8cea972aeb9 *man/plot.fluct.Rd
1d336234f2c664954aa84a2241c4b9dc *man/plot.geostas.Rd
a3f5d4c511425d3eda4cc9f50b73923a *man/plot.hmmer.Rd
8040484d611abd369628ec19067f8730 *man/plot.matrix.loadings.Rd
cde80be2caee0007d3aae194170a4373 *man/plot.nma.Rd
2824401b7330fc6cc510a970c431570a *man/plot.pca.Rd
c6d01fbaab9a9a055e0358186a5215d8 *man/plot.pca.loadings.Rd
ae438e3711efafcf3b92f50cbc4ce171 *man/plot.rmsip.Rd
7b93481e8d7deb00308d62920c829f7c *man/print.cna.Rd
5199c78f35bcb8aade5e662e4cbf968e *man/print.core.Rd
fbd2570538e2c23bd7a8992291f3ea23 *man/print.fasta.Rd
9cd68565f972204cd7a130537019529b *man/print.xyz.Rd
84648862fc42e524d2136b413f71b251 *man/project.pca.Rd
94fa11c7e6b05efcd66b02b7aed0d899 *man/prune.cna.Rd
926abf6f9dc6d6491ac33d13a806cd1c *man/pymol.Rd
bbcd9a2272643a6a21624b9ac529026d *man/read.all.Rd
debe46ba72c904999884f3341ab3e0bf *man/read.cif.Rd
2019088967922f8588c3946894828f35 *man/read.crd.Rd
b05016624c33ec614acdce05ff1e17cd *man/read.crd.amber.Rd
18f77ab523572c2e13b3749a4c5a634c *man/read.crd.charmm.Rd
033136ba003643685b20aeb67fcf94fb *man/read.dcd.Rd
e284140c78fd90faef71950e71d63ee9 *man/read.fasta.Rd
de496bd93cac221b5d9525c5af9ade1c *man/read.fasta.pdb.Rd
e464eb9cba639e23986c61444c65ad93 *man/read.mol2.Rd
aef6485e597d4e4ccac1da0b72c021c6 *man/read.ncdf.Rd
62f8fd25c2b04663b7643f972baf2528 *man/read.pdb.Rd
6e3ad77352cf6c4e2dd4fb7354994cae *man/read.pdcBD.Rd
5ab0698d800bdb8b7c006b50fbabb69a *man/read.pqr.Rd
49161567fc390dd0b024c034fd7141bb *man/read.prmtop.Rd
57fdce686ee9a7163fd5d7d11263ec6d *man/rgyr.Rd
e916b3a1dc4123b0b80b2c0c2939c3e1 *man/rle2.Rd
917bde7f1d46c7f065fba50151b25916 *man/rmsd.Rd
0edcdcabf8263e255f8b8fbb6385e4ee *man/rmsf.Rd
a271c09d4ce2e24c86fcafc5fa66edaf *man/rmsip.Rd
3ef8d4666baeaa9f66b846e55a90a724 *man/sdENM.Rd
f8823b561bafab4e9b7562a424aca0e3 *man/seq2aln.Rd
54c2a167e8ac5a75579712bdd8acedfc *man/seqaln.Rd
0ad20ce03870d7f6af01271eca387633 *man/seqaln.pair.Rd
678abd82bb014d24f3372cc7e2b299aa *man/seqbind.Rd
482e3d9e6896cee6f90f3d2767d6f214 *man/seqidentity.Rd
25cfad04dae510fb7f6014aab50909ec *man/setup.ncore.Rd
8fdefbb073ef2fd752b62d5dcb2c8a32 *man/sip.Rd
b9c1625f98df791d0a4e76604a09dda7 *man/sse.bridges.Rd
af3965c5649462ca5c5c1778140242da *man/store.atom.Rd
655a396c3da16f478b6a60fb042e4830 *man/struct.aln.Rd
e11dfa2cce7b480f56e0153a82d9dd91 *man/torsion.pdb.Rd
2bfdfc55c6bc21de9c0519fb3ec99eb7 *man/torsion.xyz.Rd
6b60ea4ab1b2df24c0434f4289b9aa55 *man/trim.mol2.Rd
63ce6004ceb8bcd8c1a5bf17ab642f28 *man/trim.pdb.Rd
46b164a4619290bad96ee94d3d413a68 *man/trim.pdbs.Rd
52149be72b4031fc5caf28fc8ae5ef79 *man/trim.xyz.Rd
67c2777942274c48a7271290b6e23928 *man/unbound.Rd
5b47c79a744b28a32b02971a6a8d1f22 *man/uniprot.Rd
8d1f856736a9fb3121a0dc347b65d70c *man/var.xyz.Rd
77cc057f3957a606eb0f899a98170541 *man/vec2resno.Rd
bbe32ca06597f6b299b4d02e8056d20e *man/vmd.cna.Rd
2180250f10d808b67fb61cb50fea8e91 *man/vmd_colors.Rd
1bd7706fbadf8fc9c50b0d6b66bc4fc8 *man/wrap.tor.Rd
5a7e2af1e926232bd2a33395e2b6e438 *man/write.crd.Rd
a7e9e2d595918af74478d8d1d5e03dd8 *man/write.fasta.Rd
9f23868cb6336228b1a59ba814014e5d *man/write.mol2.Rd
affb650517fc141106b158409134fb97 *man/write.ncdf.Rd
36aeb1e09f1f685aead3ca2d2a572422 *man/write.pdb.Rd
7f5780f0017857067eccc30c99b0b6a9 *man/write.pir.Rd
69a99c1725e03f159a4c112d53eabded *man/write.pqr.Rd
643a19368d05858392470da9b59f22bb *src/Makevars
d30ec79397c9c31e5639212e3287dd58 *src/RcppExports.cpp
1358a5ca323fe8cbd5883151808c2838 *src/convert.h
4311765ab076cb1f4b1e96adc4b29c18 *src/gzstream.cpp
c32e16a810b222875c935750f705e675 *src/gzstream.h
c6d9867eebb95e07e20a3cdb9dffc387 *src/read_cif.cpp
6580911a047279f2ce6cba55b91b9779 *src/read_crd.cpp
399ca8db09731613ece456c7ab4209e5 *src/read_pdb.cpp
fbac5722a584bdd47928b5ffebfba3c4 *src/read_prmtop.cpp
a30defc9248c87aa0ef79600ef83dd13 *src/utils.cpp
1539d29f6aeb429787b8aaff9cab2693 *src/utils.h
7ffe3e756f90cee9d1c7a3a9504c8775 *tests/testthat.R
e562ac9c81e2be76674885a50d7daef9 *tests/testthat/test-aa2mass.R
1c9b5c113f5a3df53f41556673cd35c2 *tests/testthat/test-aanma.R
f13185bf4c3bfcf5c3b1baa048c092b1 *tests/testthat/test-aanma.pdbs.R
f4a44448a8ae2a889fe195f7ac7bc89c *tests/testthat/test-atom.select.R
ad7f0e5862c60ef29595c538f79b6ea5 *tests/testthat/test-atom2mass.R
f1871bfb01a5a9e9912b347cbe967ede *tests/testthat/test-clean.pdb.R
df734a56c16ed2286c2a22404610e44b *tests/testthat/test-cmap.R
d2188a463c4f84fb3770575664dd607b *tests/testthat/test-cna.R
36b28b709f967ac73ffbddd875581c1c *tests/testthat/test-core.find.R
43444589d48a434fa0d98b0be3821bf6 *tests/testthat/test-dccm.R
47f12cf7b78fbb0babfbddbebe98d58f *tests/testthat/test-deformation.R
0fc53ca2b7b7cf3f3133ed23552c792e *tests/testthat/test-dssp.R
492e446704599f685a2eecab30d1b8ea *tests/testthat/test-fitting.R
61e97cf4b4137e829f21e5fc4de1fc39 *tests/testthat/test-get.pdb.R
8279591f9aff5854a242050dc08a49c2 *tests/testthat/test-gnm.R
dc4c48a77b4c657b74eb44daf00ea594 *tests/testthat/test-mol2.R
547dd228671dede9b4d8dbc067473ba4 *tests/testthat/test-nma.R
049cd8b11592a79053243d7ea1071045 *tests/testthat/test-nma.pdbs.R
baf983dfe1b2cdc7d191936c5b90fa84 *tests/testthat/test-overlap.R
40ceba65a3f1831a50bd9807b54285da *tests/testthat/test-pca.R
39ef5083ae0440ef36dbac6a2fbe3164 *tests/testthat/test-pdb.annotate.R
6d420aec07060d76828d0b256df3cdf8 *tests/testthat/test-pdbsplit.R
fee9f764400fb57d1ae093cb70645776 *tests/testthat/test-read.all.R
023023edfad99f9741fe5b952414d125 *tests/testthat/test-read.ncdf.R
e53e540be9a337044ddd6f5c8ba0d96f *tests/testthat/test-read.pdb.R
61e0586230215210805dae1af57be23a *tests/testthat/test-rmsd.R
94e5f63629ceefb36cf684c98d893dec *tests/testthat/test-seqaln.R
6df4c57a5670a44aacc181a2e01b8b72 *tests/testthat/test-vector-funs.R
e241b7f611abf8631129416b2b2a6fca *vignettes/bio3d_vignettes.Rmd
