cbc611934b73d27581d168c5221198b1 *DESCRIPTION
c67a4c96913ebbc58ec3b0a0be7f0899 *NAMESPACE
4a45ccefefee9671f8e7c75f74365de9 *NEWS.md
3cef46985a59d1a06ac215c94932c911 *R/biomart.R
3fe67516fd09103673d75d032dff446d *R/biomartr-package.R
d41f70db0067a7b948ebee66b0d83c0d *R/connected.to.internet.R
91093c872e21add518aff030ddf2cf19 *R/custom_download.R
d55b50b1b65ab56389b87f8548f9c1dc *R/download_database.R
aa815f2c3a64dd902d78c85b989f1c4f *R/download_database_all.R
e6f8e519820f41503841d35409c1b2a8 *R/existingOrganisms.R
10fe8db51988ebdc4033f7905a7e3e6f *R/existingOrganisms_ensembl.R
874ee388fd992e124c36be2a5257a88b *R/exists.ftp.file.R
ae5dd651251f2ac551db8b2611ac12d2 *R/get.ensembl.info.R
19ea6146878bc5c32de8c04093e44800 *R/get.ensemblgenome.info.R
02945a9e83bb7efa49af25d32d68f7d3 *R/getAssemblyStats.R
9476ede665e1046a675d0b494dacc40b *R/getAttributes.R
8380ef13400401fc404978c1ad9ee428 *R/getCDS.R
ea619c42903b49e3098c065f028e47c9 *R/getCollection.R
f857992021f4ba9d06f28be39f26471b *R/getDatasets.R
fb17b8d789de6b824b80e0020cf6cbc6 *R/getENSEMBL.Annotation.R
0d93f3359ce76523da3e1a3c8dfb4210 *R/getENSEMBL.Seq.R
a88a7d048e0d2f425bc164ef2be2936d *R/getENSEMBL.gtf.R
aa9e9d1f7b1065ab0cbbb9153c9ef69d *R/getENSEMBLGENOMES.Annotation.R
002ed142ff9f0de22c5ad85fa9f232a8 *R/getENSEMBLGENOMES.Seq.R
f0d050742884ff6bc0645b2376b90181 *R/getENSEMBLGENOMES.gtf.R
c7d88b11ec6fdade010034bf08c64a1d *R/getENSEMBLGENOMESInfo.R
d890896b6ba57ecd5fde48ab68065956 *R/getENSEMBLInfo.R
5cb96e3119fae29ae2e69208e4fd6dd5 *R/getFilters.R
b7f82fbc7e25fed8a173f3e4cca783d6 *R/getGENOMEREPORT.R
f19e5f47cf147c937c45d529d9a7f988 *R/getGFF.R
fac895356c78bbd6ccc72589de1b4588 *R/getGO.R
dabb9de4cd92cb5890f8f67457be0e2f *R/getGTF.R
8ab73925af4a02ba8bdb83d918a7e610 *R/getGenome.R
27f47d34d5728960a3158d4bd142d4bc *R/getGroups.R
a7923c6980dc7ddc967fd8717d35f504 *R/getKingdomAssemblySummary.R
f3c6968c6caf10f6a2c1b9494409b153 *R/getKingdoms.R
176be1d935e3ee2c4f320173ec64e292 *R/getMarts.R
83e90226e4140d332fe68809096ad3fd *R/getMetaGenomeAnnotations.R
8231f79d222c725e05b234cf54c8bd10 *R/getMetaGenomeSummary.R
257086b7c17b0adc7d984972f0fc194d *R/getMetaGenomes.R
a82cc70d3ced22805d7c4ade37a3b909 *R/getProteome.R
0af39e66f553bc955ce017899c047b12 *R/getRNA.R
d02ef37ed880daf04d569aa65e9c7d95 *R/getReleases.R
091898b2b4eecd19d5191987579e3514 *R/getRepeatMasker.R
7a193f7e8706c3f1c1e3d81888a02882 *R/getSubMarts.R
055005f94d218bb7cf412e747c9acfb9 *R/getSummaryFile.R
65287f3cb66f6e9599c6054c72aeacee *R/getUniProtSeq.R
bd503740cf3ce5d981e24c70aa2771ac *R/is.ensembl.alive.R
00c579af6b23041ceb57270a53646889 *R/is.ensemblgenomes.alive.R
bb1b8f17afd1844ba4bd7f7a4d3a3d31 *R/is.genome.available.R
f723e336d089fb25aad8ff703eeacc49 *R/is.taxid.R
c459d5794889a8dac03fede8fe96f1d7 *R/listDatabases.R
c252e20dc25213320684b3d88ea8fb3f *R/listGenomes.R
b9149ae3b2797ce92e1d09e028b5ee92 *R/listGroups.R
ac1a2e1a03e7536ebf46a95d50005327 *R/listKingdoms.R
a8b24bc7a36a539ab564f15af2003210 *R/listMetaGenomes.R
5bf1d5c9e511cab19513a8f13f17cdfe *R/listNCBIDatabases.R
eb908e79d7035b38702e812fed34d763 *R/meta.retrieval.R
d09c70e5fcdf3ba6751666a75492eaaa *R/meta.retrieval.all.R
6ec19a3328f19a21313fdfea688ebc52 *R/organismAttributes.R
5b13a063ebc8b2c990a2a0e974152a3e *R/organismBM.R
adc90880375cfac32d74662b8729f9f1 *R/organismFilters.R
01bff378b936def8f9adc23d4ac150a1 *R/read_assemblystats.R
c3016ba27648c88b2e2bf29579675e67 *R/read_cds.R
caa26d88fa705bb1341b36d8b84a6cf5 *R/read_genome.R
720a252f412637d0b168b333e846801a *R/read_gff.R
deed72d1adbc432d1144f5869b1ff3e0 *R/read_md5file.R
e20c4220c58f74bc1da2bda473f4dcf8 *R/read_proteome.R
e11011906bdad18012710d610ef144d4 *R/read_rm.R
d63f98460befccf96355c2afda5a4ae8 *R/read_rna.R
e19b8921f134f77094595de248bca2e2 *R/refseqOrganisms.R
d1ca4347c0faad2fbd141d1d2607f26a *R/test_url_status.R
a5fecfa88596c7a6cc47b716f1d4f7cc *R/toupper_first_char.R
fff8bea3bdf4e5cefb894e077d2bb551 *R/utils.R
eb4d5c7feea0fe3590938110bd84415f *README.md
f306eb741bdce9cdd244f3ce11be10b7 *build/vignette.rds
c8272a3392234c99f48af29a0ab0c8cd *inst/CITATION
b411369f23864fa7655c4ecad7eae889 *inst/doc/BioMart_Examples.R
3cdba076d7bc58f93647fedb5ebefe5a *inst/doc/BioMart_Examples.Rmd
9e6575ec091c0afd64edd84799ea2da9 *inst/doc/BioMart_Examples.html
f051408fb7f44a0e4155663d16127fc2 *inst/doc/Database_Retrieval.R
d3b0761f9272656743bcaa691aed3249 *inst/doc/Database_Retrieval.Rmd
cc88028f51a62b5cb1b88352382547eb *inst/doc/Database_Retrieval.html
b411369f23864fa7655c4ecad7eae889 *inst/doc/Evolutionary_Transcriptomics.R
cc8168244a559b80c34a04d290db67da *inst/doc/Evolutionary_Transcriptomics.Rmd
87aea29c5c1f347fd403329956966449 *inst/doc/Evolutionary_Transcriptomics.html
be2c7c3845637e455f6d8261887b2eb3 *inst/doc/Functional_Annotation.R
adcdc8e4d7972b4c4d202b838fac9486 *inst/doc/Functional_Annotation.Rmd
01a6aba2341f1270efa7f914083558ac *inst/doc/Functional_Annotation.html
816eb00dc5f75050c208dc02d84b8158 *inst/doc/Introduction.R
44dceea96de96e128822eb4b930ee423 *inst/doc/Introduction.Rmd
618b0d90ae9907695bd1eac9bb6e203f *inst/doc/Introduction.html
09cc37f1ab6e6563b0f9a974845effa6 *inst/doc/MetaGenome_Retrieval.R
b93d9d807ec94dff72b83b428cb1b3a8 *inst/doc/MetaGenome_Retrieval.Rmd
edc507222b43a4612ee51bf51694f0e4 *inst/doc/MetaGenome_Retrieval.html
2e84c11ac521e827f4f3ebc8f6b5deac *inst/doc/Sequence_Retrieval.R
9cbf455b7400843f1eeed6f2a5ffa915 *inst/doc/Sequence_Retrieval.Rmd
e27edd03e140509c22f52acb9c0c0d7d *inst/doc/Sequence_Retrieval.html
7ce8ee9996eb600b32e6fb09d1a6a7f9 *inst/seqs/ortho_lyra_aa.fasta
296a0b7d6bcd6f92fd5dc62f07645cd8 *inst/seqs/ortho_lyra_cds.fasta
5cba7f2586973232a8ced4172f1370ee *inst/seqs/ortho_thal_aa.fasta
5d3c6d1cf218ebcc8104f96012f4e265 *man/biomart.Rd
4b3a4c042d9d6bf21f7955986e50f35f *man/biomartr-package.Rd
143a8eddc9542f14abbe3ac7ce4e83c2 *man/download.database.Rd
cd47c4077d062dccf95435b6c626c8df *man/download.database.all.Rd
979cd88cf3897eef125b8c1148b3bea6 *man/getAssemblyStats.Rd
cc5094f70373d11f3d83d83771a1e1d1 *man/getAttributes.Rd
fccc52eee41e80b41455e3c8b1dd1531 *man/getCDS.Rd
a1fd20bf22386deb067a7196059d5f54 *man/getCollection.Rd
ad752ba56a0fee18b37ec58af9cdf32a *man/getDatasets.Rd
fee2db2e5e20d84d624f6bbd25332592 *man/getENSEMBLGENOMESInfo.Rd
281769ae5d9a1fc23778316be4b04341 *man/getENSEMBLInfo.Rd
3a64b9305c8b3709cf87c9e67a6e411c *man/getFilters.Rd
e2efc2e2e9da953020ec1caa8721c735 *man/getGENOMEREPORT.Rd
ee730ba751403ebcd65341e7d9db79d6 *man/getGFF.Rd
6b3adfe98f540c400b76ed194d573b05 *man/getGO.Rd
f89a63f484a29b75f5137bb624919d90 *man/getGTF.Rd
7f89530586a4607ed3bb9bb80615178e *man/getGenome.Rd
8cc2db2f1b7117ced73758a0c83d240d *man/getGroups.Rd
2c802a6c86ad49ee333848c9524d500e *man/getKingdomAssemblySummary.Rd
46c8c676fd3e1c24836dbb914306cb85 *man/getKingdoms.Rd
8c733262a48f059222a5e33ad390aa5d *man/getMarts.Rd
7fe6d7795b9c5db69d74b1cf557aa6ae *man/getMetaGenomeAnnotations.Rd
b7e6f088a9c66f73483d865a017a695d *man/getMetaGenomeSummary.Rd
f33a56686f072a89535360a2e9b3a732 *man/getMetaGenomes.Rd
24b2c52c5209d8b276770dab9c2166bd *man/getProteome.Rd
2a2719158b664781236759816c354cf0 *man/getRNA.Rd
de55344a881e39a306b7a4426ce9259e *man/getReleases.Rd
738edecaa7ec43e28e1c18f75e1284b5 *man/getRepeatMasker.Rd
c37f911baac098d5507a5f1bf42593f6 *man/getSummaryFile.Rd
8d867d79ca3932009663a013c372a58c *man/is.genome.available.Rd
499b0ced0b349f8875d8835291300ef2 *man/listDatabases.Rd
0556e9c237f28d46e6dd495ce5649b26 *man/listGenomes.Rd
b2a7875cf103ac7a392ee47a877499e5 *man/listGroups.Rd
2e39bb8cb8b3d3163b77b0c89d261d57 *man/listKingdoms.Rd
deb183bbac6f7021e203169eda775329 *man/listMetaGenomes.Rd
6cedfef9e9728c3c9fa7d863e567fb97 *man/meta.retrieval.Rd
27dac49b680aea4810fb89f0026d5e80 *man/meta.retrieval.all.Rd
79da0f0fee569aa1a400d0f7e271e032 *man/organismAttributes.Rd
c14d18cb67b768659f7b15513497f00c *man/organismBM.Rd
c672a3009fd86dcb497195e1af53b88f *man/organismFilters.Rd
c46d4ec656c07d53c5e1c920ad32bca6 *man/read_assemblystats.Rd
88503169fed3a8194bef4a0056758cf6 *man/read_cds.Rd
539d167aa56bb29cf843550e884ab6f7 *man/read_genome.Rd
70f38c333b434845b2481c2f2fafa0b6 *man/read_gff.Rd
9c0104bad309208e153e74972ad4d00c *man/read_proteome.Rd
c131e696487609c64283107fe86f9dfc *man/read_rm.Rd
dbb30981ce0ec89c8aea3a450f5b9ec9 *man/read_rna.Rd
0c238f641bd6d2a65a5f6f8c5350c57d *man/refseqOrganisms.Rd
52ab185a98572381b80363f4bb29fe72 *tests/testthat.R
bdace9147af176f7929925b59874c67f *tests/testthat/test-biomart.R
546fce7b047fd5661762db07756f6877 *tests/testthat/test-download.database.R
129d18b9229b3e9320a932a6da0662db *tests/testthat/test-getAssemblyStats.R
ae1f6c4ebf443da9f7293a9fc9cf38cf *tests/testthat/test-getAttributes.R
593aa96d430923b569e33a5eef130186 *tests/testthat/test-getCDS.R
978ea6bdef6bbe2b74d8f125233785ad *tests/testthat/test-getDatasets.R
ca305c467980b7d5a317ed6851fcae5d *tests/testthat/test-getENSEMBLGENOMESInfo.R
ca429490828faed6eb1063b5579e37a4 *tests/testthat/test-getENSEMBLInfo.R
ee099ad65f0647db8525bd88a4984154 *tests/testthat/test-getFilters.R
8abd0a0efa367712586582d1fba01f44 *tests/testthat/test-getGENOMEREPORT.R
9668076b1be50c5750599783f0a2927a *tests/testthat/test-getGFF.R
afd5780e5ad23125188b7ce4165e6336 *tests/testthat/test-getGenome.R
d1668135d299514827f5dc6a0fc128b5 *tests/testthat/test-getGroups().R
1dbabdc4472c819833af8460c2bbd4aa *tests/testthat/test-getKingdomAssemblySummary.R
1e63c606bf9adb7414547e062c8ae15e *tests/testthat/test-getKingdoms().R
0216a2ff0b615b670e3cc0ccc23f9b8e *tests/testthat/test-getMarts.R
0cc9b2ebe9ab520b7809d5618c47e305 *tests/testthat/test-getMetaGenomeAnnotations.R
c129254c87a4b23b9bc2486f84ad231e *tests/testthat/test-getMetaGenomeSummary.R
7b8d5d5f6199ba266b915dee0f0144ca *tests/testthat/test-getProteome.R
5435fede1b2b7d758e33cc4536bb1ae6 *tests/testthat/test-getRNA.R
cb4b7581482e593b193f36018527980b *tests/testthat/test-is.genome.available.R
6fe6e39397191eb97be1a6fb429e0aed *tests/testthat/test-organismAttributes.R
ddfe5b61e32d07440dff7917d4fb3c88 *tests/testthat/test-organismBM.R
0d90b821123a2b3a587693235d76e4b4 *tests/testthat/test-organismFilters.R
3cdba076d7bc58f93647fedb5ebefe5a *vignettes/BioMart_Examples.Rmd
d3b0761f9272656743bcaa691aed3249 *vignettes/Database_Retrieval.Rmd
adcdc8e4d7972b4c4d202b838fac9486 *vignettes/Functional_Annotation.Rmd
b93d9d807ec94dff72b83b428cb1b3a8 *vignettes/MetaGenome_Retrieval.Rmd
9cbf455b7400843f1eeed6f2a5ffa915 *vignettes/Sequence_Retrieval.Rmd
