079afe99ccfd37d005f6012a28c62b67 *CHANGES
70038f15efc9a03a052b5fe0f7c7730e *DESCRIPTION
d55a7488d58470d86a039986b62b6451 *INDEX
5453b67cff7589cab2a1fb07b81a6bdb *NAMESPACE
cfff5211f481c6d8c261a88ab2ec7173 *R/add.s
f6be2865575bdc241d805f4ee7fd5023 *R/adjust.linear.bayes.s
18fb569de5766947fdbb77fcdb783f73 *R/bqtl.s
0e9a2a6cfda7372b9c690fe4a6acdeb2 *R/configs.s
a0851e52ea94f0f4cde7a15f0d1023a6 *R/covar.s
56f9291c87708c208485c1547d543ef0 *R/dom.s
c49055e0458f8eba1591b4eea51b43a7 *R/equiv.s
e9d5f5718636085a45b941fd6fdde869 *R/formula.methods.s
f513faeb4bc4d59d3dca5d54f9331f84 *R/is.element.s
37d9574d99f839a2781ae6d7fb264ad7 *R/lapadj.s
1e187038179ae64e17b96cd88ac51065 *R/linear.bayes.s
86814dc00ab9cba82ad2b1d5abfc4104 *R/locus.s
b7a0f11a9a533f35c124175f89f94846 *R/make.analysis.obj.s
38035d0944d8db0a6d5956b59add6c63 *R/make.loc.right.s
77b3c1742dd8f379f87cd00d03874373 *R/make.location.prior.s
4ecbd1a7b4488b92487fe1e7a6123adf *R/make.map.frame.s
87541b9189845910c0e5e9a9324bd321 *R/make.marker.numeric.s
014babb37ffa1cbcb3a3c286c928e55d *R/make.regressor.matrix.s
558c56eca42e2d34798f6977ebc0cf6e *R/make.state.matrix.s
bdb0282dc1270c79fe917f23ba2cb452 *R/make.varcov.s
bd6ac64ccf59f8179e030244b8659870 *R/map.dx.s
be756761c06d992b440557257a2407a2 *R/map.index.s
621b7594584e4d6c2e20e91cf32941d9 *R/map.methods.s
48698d3f923e237d6293689652e97eb7 *R/marker.fill.s
460f328806acb074fe760e557108f94f *R/marker.levels.s
0fbfdf27b3838fbd01060e2a819269da *R/methods.s
3ab56be666e79f363d59d3637322a39b *R/plot.analysis.object.s
38f054d1bc64df5ba7239afe85d5ae0b *R/plot.map.frame.s
f59dc9dfdc171949ecc3ce8295b98423 *R/predict.bqtl.s
217b72399979c891fb5e3082fb8cb4c4 *R/predict.linear.bayes.s
16966623ea5787f11fc0fd8671a90d5d *R/residuals.bqtl.s
f4a778e5693f86294567940ca6ca42e0 *R/rhs.bqtl.s
833b3a3ca1e68d1cf20237261de6b322 *R/summary.adj.s
e3da24ff2080aaf26048726698ed44db *R/summary.analysis.object.s
c8a7accca8ffa0687b4b454a7ebd884b *R/summary.map.frame.s
a766b4b9efe7141932ef9b1ea30346f7 *R/summary.swap.s
e99852198cbea15f29a62325bbdeebe4 *R/swap.s
16de2d69926c8428c61a6d00f46680bd *R/swapbc1.c.s
27dfa60c772e4e3da350c7f9d11e33cf *R/swapf2.c.s
578faea480422005c228bc2d9fdef041 *R/twohk.s
a1fd9db7280560dcf8ae4accc83fc4ce *R/twohkbc1.s
9b54d3a228d31679e628d7385e0de5b8 *R/twohkf2.s
7da3ce0357ca9028342075861cedbb1c *R/unique.config.s
7399531c0c4ebb006392bd840731bf56 *R/update.bqtl.s
386a8d26a7cf5dbc8a40436285a31829 *R/varcov.s
eb6a646cee59aaa45356a4e07c1fc5d2 *R/version.bqtl.R
cf97df3293639e4cf400e9958cbcd94e *R/zero.dup.s
a6e79a95b9a49e81a9cb479acdab3837 *data/little.ana.bc.RData
15aa5cbeb4352addbc83f4a220ed4c01 *data/little.ana.f2.RData
6bff424846891eff1b656bf36b4d1576 *data/little.bc.markers.tab.gz
263982d9e588e3d6254c9bcf6f1713be *data/little.bc.pheno.tab.gz
9ea5bfa63e018269580d6a77cf5539cf *data/little.f2.markers.tab.gz
0204f08dad7f721811277755061dedcb *data/little.f2.pheno.tab.gz
95fa1e80da85c6056420c07bc6cf65a7 *data/little.map.dx.tab.gz
2b72050f35ab91c515db687395c74449 *data/little.map.frame.RData
31066ea6375eb48abb81d2d108a4f843 *data/little.mf.5.RData
5eefe93173d17f5e332a5130527c1a53 *man/a.starting.point.for.bqtl.Rd
4463423290b32855085ecbfb47765ddd *man/adjust.linear.bayes.Rd
b342ec1e899355a3bd923470cd6405bc *man/bqtl-internal.Rd
c35aa0e621fbbbb98849f1607e80229b *man/bqtl.Rd
487313f997d4a85723dd721dbc42e8fb *man/coef.bqtl.Rd
b37368578a6370056d14906717f610c3 *man/configs.Rd
6c677812151539e67dd02e67889186ba *man/covar.Rd
73e46cf0189992b13074652e3ac3ed6b *man/formula.bqtl.Rd
4c7c29953b0c9d355c3fccc04ef265de *man/lapadj.Rd
4f170ca16db75dbdf0f65376fa00c230 *man/linear.bayes.Rd
226b4e79e72b24ba2d60d089b4d8bd72 *man/little.ana.bc.Rd
68665e445ed62224947f693b3ec13d2c *man/little.ana.f2.Rd
722a06dea5951c6f2a7173a6338834af *man/little.bc.markers.Rd
f258f4da8a8b4d595ac3ae03a5353c1f *man/little.bc.pheno.Rd
d0b67b68c23cb43b5fe8eecf881b9092 *man/little.dx.Rd
7213c60321eb1a1ad341a2d7e0a3927d *man/little.f2.markers.Rd
336e47b8a7c90794c8746f2e4e46dc0f *man/little.f2.pheno.Rd
d42dd94c68ba40a5a27cd46ae7f4eaf5 *man/little.map.frame.Rd
9ec0c42f08894e6a8a41a3728f5fed97 *man/little.mf.5.Rd
83e2ef407332e7ec7110eb031aeecde9 *man/locus.Rd
7084867e36515f90e9b1194849b04ecd *man/loglik.Rd
bc5ac3996f2715e86c113ed0b29cdb21 *man/make.analysis.obj.Rd
a0554ba94c80a8d7518e610e84ee7132 *man/make.loc.right.Rd
deef674c49a237e83396e80348b7a64f *man/make.location.prior.Rd
247436f56a0282b5d62c51ea4a12cbb6 *man/make.map.frame.Rd
ce27125861a45d8620d4f52389c0f477 *man/make.marker.numeric.Rd
ccb92b52d71285bf8e1e5c8e77fe69b3 *man/make.regressor.matrix.Rd
0d541c0a1280a136ae30a5869c122607 *man/make.state.matrix.Rd
43c5bfc94af8e65d9f7b223327aebc3d *man/make.varcov.Rd
f0f8f31fbf97bd857ebd82829f5ee341 *man/map.index.Rd
e9cff1d5b643c53d74a3e8db82e61363 *man/map.location.Rd
9c60f5a3ae9d8cee432e7019782a63d5 *man/map.names.Rd
69c236cf8561041e35d730c432f9a179 *man/marker.fill.Rd
681c40b4a9a71c162d257c8ff7afb59f *man/marker.levels.Rd
5629b41cdce3b2b094566c7bfbec1249 *man/plot.map.frame.Rd
44747ffdce0fa6cea9564f1225ca3919 *man/predict.bqtl.Rd
d3d52c57066d8b1ca9fad98d2b48aaf5 *man/predict.linear.bayes.Rd
371ee55d4265556bc9be5d954e4e3267 *man/residuals.bqtl.Rd
ff19c4aa6c12a75a1cc9d6adeca67aaa *man/summary.adj.Rd
3e5fc860235c1bc253f47a8368d0479b *man/summary.bqtl.Rd
049d46e651267cb410362d1f41850658 *man/summary.map.frame.Rd
b4abdb4d33802fa801ec61ef21044c26 *man/summary.swap.Rd
14f3f125fa574e731af0ddd4a10e88b4 *man/swap.Rd
034d1cd63b88417f1e12daeda945b082 *man/swapbc1.Rd
9d5eeb2e64b7240e4c3f2867eb5b7b14 *man/swapf2.Rd
67d892b52c12602cc980c708d008414a *man/twohk.Rd
6564b5a3f93094caf0f4286c6a6bcf52 *man/twohkbc1.Rd
bdd88f58f930dc1c28d0327799421f7f *man/update.bqtl.Rd
c218cb643f39714530b8447394a5fa7f *man/varcov.Rd
82dfbc505e1e88cf1edfcab48cbd30f5 *src/Makevars
25aff088fcd39ca5df11c174599f3940 *src/bc1wt.c
e51eba1e25e53309bfc0225ec05d4836 *src/conCk.c
dbda43ce6bd025b10b0e04b430bc1d1e *src/condreg.c
ae3000e91ca117e2673175d230517147 *src/f2wt2.c
d9cc0bdb295486cdae6dae678c569127 *src/hessup.f
25b7d3dc212f42dd76aaa3e239d1bdb2 *src/hkreg.c
668a815cecee782b9a70657ec11ecb27 *src/init.c
98034f6cb3d51e4e2f2f954a2fb13d15 *src/lapWHL.c
96570ef1b943233b5695e77fddae68ed *src/lapadj.c
6798311c704b5b00da02ddc3f5f10c32 *src/lapadj.h
447507316423ff805d07ef176de3e751 *src/llkEm.c
ec0acbbb41ae85fc412682cbac48c17b *src/normLogLik.c
3d1f704c758f8f192c0ec6c7ab6e1895 *src/swapbc1.c
b5f1cf4f2e79436952106fd2d6986941 *src/swapf2.c
b756baf3c1e893a4c3e2b1387f7912f4 *src/twohkbc1.c
ee2f46701859d50e01c3187cdcc4fbad *src/twohkf2.c
9aeeb8194a70df8a587b81f47533908e *src/upbqtl.c
