e77d5cea6f8e47befba114b7c17dbf98 *DESCRIPTION
49e18f741a2ff2d20ea617fb69603663 *NAMESPACE
da0bfc16af0dd2eb499071d3986c62c3 *NEWS.md
1aaf00cd90bcb0b8031682fd864c946c *R/cauphylm.R
1025cf9b83044e8a699c4be9639de974 *R/data.R
51593b98dc33c03785756d792dc09a6d *R/densities.R
673b68110b87de08a2f046177f84b802 *R/fitCauchy.R
8b3245298c682cba1bfbddbf08cb0677 *R/optimization.R
725b8c561c4bccd33a59df8b760402b7 *R/plot_asr.R
176768bbf3f0c88c22a102d24cb5f5b7 *R/rTraitCauchy.R
57808319e64aed739eac746ca994200d *R/utils.R
cd3ff6e1c3a8cca8f5b048f1836af7aa *README.md
7080893e02c49cd296d4424b9be55069 *build/partial.rdb
aaa2ffed0a7f8ecb18b4c51dffdccafd *build/vignette.rds
2b822513c1ffa9634d9b97955a3919e1 *data/lizards.rda
44acd1b219d2d20f4db961def84d5121 *inst/CITATION
35a834c5e29bdbbcfc5ea0a513665d98 *inst/WORDLIST
4830e54f14dcf9779736dc39fa25d294 *inst/doc/lizards.R
2a0c3eef2a9373155fca8cd16438e993 *inst/doc/lizards.Rmd
d39ed47d9d8052462b614501fde0ded8 *inst/doc/lizards.html
3ece5716a2c213453ef6b2ffbddbb0b5 *man/ancestral.Rd
77480a7cf4401699312e7cff2ca1d61e *man/cauphylm.Rd
ab71441913b844e3c398a7974d148e29 *man/checkDuplicates.Rd
866498300bfaef00445716bcb50a3477 *man/checkTraitTree.Rd
2abc4e42c0a591af696727136f650fae *man/check_tree.Rd
b455d91ea5b1572874bb88d59be739bb *man/compute_vcov.Rd
8163159fbbdbd5e79414038d6390e465 *man/do_optim.Rd
7d954972e74232bef2bf79ac15394984 *man/find_modes.Rd
c35170b2b4164348c816e20dee7b6437 *man/fitCauchy.Rd
467ee7d8691370c8d58ae96d1e7440ca *man/fitCauchy.internal.Rd
96d85bcb00a09cc0fc7965d9a0dacefd *man/fit_function.Rd
e9fb7bc10630c842550530c830abb74f *man/getBounds.Rd
fc9ef56d09038bfacf33ac2ef243f22e *man/getBoundsCauchy.Rd
2f890970f5f2f9c607a69565a2522d6b *man/getBoundsLambda.Rd
97ac26f04fd6ae4e69482636af10a329 *man/getParamNames.Rd
e590b67491e1b0a5414bb9f2d4f5a4f8 *man/getStartingValues.Rd
9a37c468fc0c92ee460640ea41ae901a *man/getStartingValuesCauchy.Rd
974128bfaeb9e52602305dd0f08b32c1 *man/getStartingValuesLambda.Rd
fabb66cf5ea5edd8dce01220313bb595 *man/hdi.ancestralCauchy.Rd
047bad19ecda992b27c3c96f5b44df3c *man/increment.Rd
1eca9238bf843644d050321c5c6d2a75 *man/initDispersionParameter.Rd
0e6f2bd7c88bc28c772c2dd9253e6f2a *man/initLambdaParameter.Rd
49c929ded64d18fd23649f42f5bddf95 *man/initPositionParameter.Rd
0677801d4104a444d5d73535158cfd45 *man/lizards.Rd
0225dbff02e8c0272bbc5e0d03f14b90 *man/logDensityTipsCauchy.Rd
34b7a060b2aaa4cd960960bf444f4d8c *man/maxLambda.Rd
6333da96fc773c456a0a1c0e4228afc1 *man/minusLikelihoodFixedRoot.Rd
f52c93b96ce0d0cabfa64355b3214e44 *man/minusLikelihoodFixedRoot_lm.Rd
88190db92d494d6cf52a8ef70de98f3c *man/minusLikelihoodFixedRoot_mu.Rd
c700de4ccfc8f25f6efb0aa6f0c7057a *man/minusLikelihoodREML.Rd
e13377a874fe1bd219d93991bb360a32 *man/minusLikelihoodRandomRoot.Rd
402f934603372bba406c1e7656f71651 *man/plot.ancestralCauchy.Rd
f278fa5eb657560ee5c58b405c1bf33f *man/plot.invisible.Rd
b5f954273421161a9bbda44313f3a69d *man/plot.profile.cauphyfit.Rd
526eb5e704a2483f28d1ab47efd08d24 *man/plot_asr.Rd
d58e12d3f38ca6737b315b0c8132e9dc *man/posteriorDensityAncestral.Rd
65b4e89c04b0cbdc6503aa89530db1f9 *man/posteriorDensityIncrement.Rd
a94b297a2841f700b841cfc5454474c7 *man/printRTreeTest.Rd
ba22b33e08129682a5d6b59753b62f3d *man/profile.cauphyfit.Rd
dd48000426189a3418116e7f946a3ed0 *man/rTraitCauchy.Rd
4fb0af27441052862293138abdaa5270 *man/reroottip.Rd
77211e57e07e0aa6f363024748a912ed *man/safe_get.Rd
7b460ffa699413e10e42f5c31516a701 *man/simulateTipsCauchy.Rd
fbf38c3c34bf6a7d0eb65eed6aceedba *man/transformBranchLengths.Rd
2a664a33b9c9a1c2bf6588a9385dc2fc *man/vcov.cauphyfit.Rd
0c1c97e1f908546691244483d21cda7b *man/vcov.cauphylm.Rd
5786928677fb6a18f99cb5f1c8e4b581 *src/Cauchy.c
2e8cfa0cd917e123a9dbaabc918c9196 *src/Cauchy.h
bda9b0896a4e69fac76eb47f1f4c204b *src/Cauchy_R.c
a2e6e7685e5585cbe79270c86061b065 *src/ComplexLog.c
428120dd908232a83b6a5ce057a7939a *src/ComplexLog.h
7f62ac30ed96fe38171a00512b50399b *src/Kahan.c
a5c71061705a565b077b1a7e8c10c1e6 *src/Kahan.h
488793af1b081ccc0552d324f63f627d *src/Makevars
46674c684961694a4675edfe0f7d0fba *src/SimulateTrait.c
cf08340685c0be4e702873cbd754f5c7 *src/SimulateTrait.h
74a758c3a7c0bf2cccdf3e0ea5b6291f *src/Tree.c
4bd955be110182dd5b690bdec4672aae *src/Tree.h
34e3843a9134c9ec6c4daf495b06d988 *src/Utils.c
1bfe020356228cc0116c838bc5b88dd6 *src/Utils.h
0aa107372d9f3192a9b0533d64cb522f *src/init.c
0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
5890e436018ae08379b62fdd33397e0b *tests/testthat.R
c78cd8edd8d0b0f09b5dfecd57c4f3ab *tests/testthat/testAncestralStateReconstruction.R
1a53dc564a259abe87455db52f2a3d33 *tests/testthat/testCauchyLikelihood.R
cd5fb72e57c6c39ccb3425259c00a22f *tests/testthat/testCauchyREML.R
7db625a2284e050e068f212ef79360b7 *tests/testthat/testFitFunctions.R
c00f058604e20adb48f1ad2a92ff4935 *tests/testthat/testIncrementReconstruction.R
0f4cda40ea28026aeacb6812d072fbbe *tests/testthat/testInit.R
f377b19342049e8c54e5a399937d1ffb *tests/testthat/testReRoot.R
c9b482dafb65a3365a527620e9b1b915 *tests/testthat/testSimulation.R
2a0c3eef2a9373155fca8cd16438e993 *vignettes/lizards.Rmd
