dd0426c704ed1a55582698c1d115e756 *DESCRIPTION
fd8ffcce66eb8e436b88ba09ef8a8aeb *NAMESPACE
01d49a135df9f1d10ef3c1c760e9820a *R/calc_metrics.R
e5e9048af56b76d1b917376aeee6c047 *R/chemlab.R
177f94fce7f4efb931caef6b88353608 *R/get_metadata.R
70061f48cc7a6919dfd4c65926a74db2 *R/get_metrics.R
9187108d7783b699deb0f56c82a1af6f *R/map_taxa.R
f7387f21353e8ccd091acf39af4283ea *R/phyloseq_integration.R
7aa506d51d5a45a3b44e168a19041d5a *R/plot_metrics.R
95fc7024391f2e551ea9bc912073933e *R/read_RDP.R
6404440d3a5b102c703506ba581dd67d *R/zzz.R
a6a8d9d6ad8c6b58be5fbf706384e830 *README.md
7080893e02c49cd296d4424b9be55069 *build/partial.rdb
70a529ee5e8a3a2e111f19abfda97452 *build/vignette.rds
d203b626635d3edc99ff4adc85ff9b51 *data/mouse.GTDB.rda
acb0c0fa2452fd8b87f87ef505175bf0 *data/mouse.RDP.rda
3bc9b5cc5a4a96b6c68b592bbecf9f6e *data/mouse.silva.rda
180a512348f6f24b147ffd8dd9cc9061 *inst/NEWS
bfee78be1272b6b45e2ee9dce827ba22 *inst/doc/metrics.R
23ed31db863f4d7920df2400def833bd *inst/doc/metrics.Rmd
ea5166ec2d60f2a6863a0235dd2663d1 *inst/doc/metrics.html
ec41e46b76427c2760833887e516b527 *inst/doc/phyloseq.R
140e15ba5cc41860065696caad9f4961 *inst/doc/phyloseq.Rmd
6343ffcd078a4ea01bd517a33b9f4b7a *inst/doc/phyloseq.html
96fb41f9bb070c8ef462d5339ab0fd09 *inst/doc/plotting.R
a28513e06783fdd5091685d8fca5522c *inst/doc/plotting.Rmd
ed8ea481f02c52331746c071de86abb0 *inst/doc/plotting.html
ebbbb44d3439f8ccaba1a37eecb19a3f *inst/extdata/DADA2/FEN+22/SraRunInfo.csv
ef728283175a33d697aa8bb90ee87a9b *inst/extdata/DADA2/FEN+22/plotErrors.png
df81889e81dc125a24797e4b7a4d2318 *inst/extdata/DADA2/FEN+22/plotQualityProfile.png
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55fb1b43b26ab8774ac879648bbfe8cd *inst/extdata/DADA2/FEN+22/plot_ordination2.png
e9513763034fb009ee9aac9eaeaf0787 *inst/extdata/DADA2/FEN+22/plot_richness.png
cc5170adb5eb2a3cfcc5ee83ac2e6951 *inst/extdata/DADA2/FEN+22/ps_FEN+22.rds
178e95ee0ee172ab808048a9f8dca4ab *inst/extdata/DADA2/FEN+22/sample_data.csv
3f5febff2701ab91b14a6e26ac8e65ed *inst/extdata/DADA2/ZFZ+23/SraRunInfo.csv
07ef1807be3ac1681d6f0fe8e19607b1 *inst/extdata/DADA2/ZFZ+23/plotErrors.png
9983ce5ae7c8f604f8e2e853c60a5a48 *inst/extdata/DADA2/ZFZ+23/plotQualityProfile.png
62692c17f8fe722cf13f57b2fd9bb4da *inst/extdata/DADA2/ZFZ+23/plot_bar.png
380fcb29f6e3837ede785f0b5f75db05 *inst/extdata/DADA2/ZFZ+23/plot_bar.png.old
31188a7979595cae3c349ffa34142e35 *inst/extdata/DADA2/ZFZ+23/plot_ordination.png
0a405fa85115dc071f6e6898581baaab *inst/extdata/DADA2/ZFZ+23/plot_richness.png
995a9624d46367f0f1c2432bfe9ec7a4 *inst/extdata/DADA2/ZFZ+23/ps_ZFZ+23.rds
1c65a6d0e6d0ba9e66eae64bd854eaef *inst/extdata/DADA2/ZFZ+23/sample_data.csv
d32cea351ec443bb324e998449d08942 *inst/extdata/GTDB/taxon_AA.csv.xz
c49388e7df2ef86110c1d43c88bbb5b7 *inst/extdata/RDP-GTDB/BGPF13.tab.xz
93387b7eaeb7fd17cdbebfed15374149 *inst/extdata/RDP-GTDB/HLA+16.tab.xz
db1a5edd98a4b14ad4eaad629771869e *inst/extdata/RDP-GTDB/SMS+12.tab.xz
24366c782a824adf62532cb6727c8974 *inst/extdata/RDP/BGPF13.tab.xz
e58510d194c5b861900f85281a84ecad *inst/extdata/RDP/HLA+16.tab.xz
070429bc0ac17935894548146a2c0ab4 *inst/extdata/RDP/SMS+12.tab.xz
530efd216dfcb6784210ac831b22b9fe *inst/extdata/RefSeq/README.txt
81357c028dba7a3a518b32a2559d992e *inst/extdata/RefSeq/gencat.sh
0044d6a8cf7cc0c32e13bfe706a60a45 *inst/extdata/RefSeq/taxon_AA.csv.xz
d8c7a54825fe8a88e8593a7daed829b0 *inst/extdata/RefSeq/taxon_metrics.csv.xz
27138d66c9980dd759f07af4121c6d57 *inst/extdata/RefSeq/taxon_names.csv.xz
9f1adf456efdc15e6b3174032a1c2eb0 *inst/extdata/manual_mappings.csv
18af02bb6e649abdee382d5cdad5219a *inst/extdata/metadata/BGPF13.csv
78ce025df7a0d3703b175ed00be284a0 *inst/extdata/metadata/HLA+16.csv
1720c91fd21baa6572592b1fa622653b *inst/extdata/metadata/SMS+12.csv
36f83704b91a96809e38af7aa7ccae2b *inst/images/plot_metrics.png
051ff8ea431d819e7fdca3e2795930e9 *inst/tinytest/test-calc_metrics.R
2ea007f257c00d81eff850136b9b187d *inst/tinytest/test-get_metadata.R
93c99412e52a78c076f1bee0025c264c *inst/tinytest/test-get_metrics.R
1c41d449f214df3b9a084860c32d329c *inst/tinytest/test-map_taxa.R
4cc00557d3fa0c85875543cdae41290b *inst/tinytest/test-read_RDP.R
0baa308f6003381164bd1abd22d88aed *inst/tinytest/test_phyloseq_integration.R
62f4e9975380929507bffb3ead9e8f03 *man/calc_metrics.Rd
247264fd830d5766bb8d246834c1f7d5 *man/chem16S-data.Rd
21bb4867e12df1d083ceef6a3338b59d *man/chem16S-package.Rd
697af1ee8899fc987bdca65b1413fb44 *man/chemlab.Rd
025dd929663a2ac8ba57d5939d41a6cb *man/get_metadata.Rd
b3de96ca0c7e89f813b1100e11f54892 *man/get_metrics.Rd
2efca1e81ea4df92902da3f97d0e9430 *man/macros/macros.Rd
75b23e2ecd21596f229fa94c832ff8e1 *man/map_taxa.Rd
a3244dc9899c63c67509d849609fa242 *man/phyloseq_integration.Rd
6d06e3784b3ab0b36c3a08d7d3deacfd *man/plot_metrics.Rd
c49d2f5c9a63be21703808212ade087e *man/read_RDP.Rd
461e996dabe4bfacd924d39cbeed1c0b *tests/tinytest.R
481c6d04dad0f20905a17ae9873ecdb1 *vignettes/chem16S.bib
8a7b32f8b4fa7968e31a9240d493f105 *vignettes/elementa.csl
56aa745005ae770a7d2ee612a9b7e17f *vignettes/images/caution.png
a8a098f8dfeb045cf8c77d5cafe68ea1 *vignettes/images/important.png
6ae0ef9b68a0c32dfbfd22441d70922e *vignettes/images/note.png
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3036d1b6f078ce0e5afccc2431cbb16b *vignettes/images/warning.png
23ed31db863f4d7920df2400def833bd *vignettes/metrics.Rmd
140e15ba5cc41860065696caad9f4961 *vignettes/phyloseq.Rmd
a28513e06783fdd5091685d8fca5522c *vignettes/plotting.Rmd
3e7a22cb64031461c6b56dcffdaea26f *vignettes/style.css
